PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000373127	[[41117079, 41117656], [41118556, 41118645], [41119019, 41119122], [41121495, 41121828], [41121983, 41122075]]	[[41117624, 41117656], [41118556, 41118645], [41119019, 41119122], [41121495, 41121828], [41121983, 41122026]]
ENST00000426005	[[41117340, 41117656], [41117998, 41118051], [41118556, 41118645], [41119019, 41119122], [41121495, 41121828], [41121983, 41122070]]	[[41117341, 41117656], [41117998, 41118051], [41118556, 41118645], [41119019, 41119122], [41121495, 41121828], [41121983, 41122026]]
ENST00000437044	[[41117341, 41117656], [41117998, 41118051], [41118556, 41118645], [41119019, 41119122], [41121983, 41122070]]	[[41117341, 41117656], [41117998, 41118051], [41118556, 41118645], [41119019, 41119122], [41121983, 41122026]]
ENST00000590581	[[41117541, 41117656], [41117998, 41118051], [41118556, 41118645], [41119019, 41119358]]	None
NM_178174	[[41116997, 41117656], [41117998, 41118051], [41118556, 41118645], [41119019, 41119122], [41121495, 41121828], [41121983, 41122087]]	[[41117341, 41117656], [41117998, 41118051], [41118556, 41118645], [41119019, 41119122], [41121495, 41121828], [41121983, 41122026]]
NM_001271807	[[41116997, 41117656], [41118556, 41118645], [41119019, 41119122], [41121495, 41121828], [41121983, 41122087]]	[[41117624, 41117656], [41118556, 41118645], [41119019, 41119122], [41121495, 41121828], [41121983, 41122026]]
NM_001271808	[[41116997, 41117656], [41117998, 41118051], [41118556, 41118645], [41119019, 41119122], [41121983, 41122087]]	[[41117341, 41117656], [41117998, 41118051], [41118556, 41118645], [41119019, 41119122], [41121983, 41122026]]

Promoter

Chrom	Start	End	Description
chr6	41122033	41122057	CAGE_peak_2_at_TREML1_5end
chr6	41122063	41122094	CAGE_peak_1_at_TREML1_5end
chr6	41122096	41122107	CAGE_peak_3_at_TREML1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I041198	41198315	41204545	1.82	[{'connected_gene': 'TREML2', 'score': 550.77}, {'connected_gene': 'TREML4', 'score': 42.38}, {'connected_gene': 'TREML3P', 'score': 20.13}, {'connected_gene': 'TREM2', 'score': 11.58}, {'connected_gene': 'USP49', 'score': 11.29}, {'connected_gene': 'ADCY10P1', 'score': 10.9}, {'connected_gene': 'NFYA', 'score': 10.5}, {'connected_gene': 'TREML5P', 'score': 8.17}, {'connected_gene': 'TREML1', 'score': 5.43}, {'connected_gene': 'ENSG00000218809', 'score': 5.04}]
chr6	GH06I041181	41181802	41183462	1.34	[{'connected_gene': 'TREM1', 'score': 40.57}, {'connected_gene': 'ADCY10P1', 'score': 11.25}, {'connected_gene': 'TREML1', 'score': 10.86}, {'connected_gene': 'TREML4', 'score': 9.26}, {'connected_gene': 'NFYA', 'score': 8.48}, {'connected_gene': 'TREML2', 'score': 4.7}, {'connected_gene': 'TREM2', 'score': 0.37}]
chr6	GH06I041185	41185201	41186796	1.03	[{'connected_gene': 'TREM1', 'score': 24.84}, {'connected_gene': 'ADCY10P1', 'score': 11.29}, {'connected_gene': 'TREML1', 'score': 10.84}, {'connected_gene': 'TREML4', 'score': 5.72}, {'connected_gene': 'NFYA', 'score': 2.17}, {'connected_gene': 'TREML2', 'score': 0.37}, {'connected_gene': 'TREM2', 'score': 0.34}]
chr6	GH06I041161	41161401	41162800	0.31	[{'connected_gene': 'TREM2', 'score': 550.77}, {'connected_gene': 'TREML1', 'score': 0.44}, {'connected_gene': 'LOC105375056', 'score': 0.34}]
chr6	GH06I041154	41154324	41154383	0.5	[{'connected_gene': 'TREML1', 'score': 550.77}, {'connected_gene': 'TREM2', 'score': 0.44}, {'connected_gene': 'LOC105375056', 'score': 0.39}]
chr6	GH06I041079	41079832	41080348	0.31	[{'connected_gene': 'TSPO2', 'score': 10.18}, {'connected_gene': 'UNC5CL', 'score': 10.16}, {'connected_gene': 'TREML1', 'score': 9.63}, {'connected_gene': 'NFYA', 'score': 0.44}, {'connected_gene': 'OARD1', 'score': 0.37}]
chr6	GH06I041080	41080801	41081000	0.4	[{'connected_gene': 'TSPO2', 'score': 10.18}, {'connected_gene': 'UNC5CL', 'score': 10.16}, {'connected_gene': 'TREML1', 'score': 9.63}, {'connected_gene': 'NFYA', 'score': 0.44}, {'connected_gene': 'OARD1', 'score': 0.37}]
chr6	GH06I041271	41271001	41273316	1.27	[{'connected_gene': 'ENSG00000218809', 'score': 550.77}, {'connected_gene': 'TREM1', 'score': 41.56}, {'connected_gene': 'TREML4', 'score': 25.99}, {'connected_gene': 'NFYA', 'score': 9.7}, {'connected_gene': 'TREML3P', 'score': 9.27}, {'connected_gene': 'TFEB', 'score': 6.27}, {'connected_gene': 'TREML2', 'score': 6.09}, {'connected_gene': 'TREML1', 'score': 1.38}, {'connected_gene': 'GC06M041280', 'score': 0.44}]