PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000309683	[[63980261, 63982878], [64004084, 64004180], [64004683, 64004810], [64023302, 64023484]]	[[63981538, 63982878], [64004084, 64004180], [64004683, 64004810], [64023302, 64023332]]
ENST00000476563	[[63982303, 63982878], [64004084, 64004180], [64023302, 64023400]]	None
ENST00000470847	[[63982827, 63982878], [64004084, 64004597]]	None
ENST00000447137	[[63985076, 63986895], [64004084, 64004180], [64004683, 64004810], [64023302, 64023419]]	[[63986776, 63986895], [64004084, 64004180], [64004683, 64004810], [64023302, 64023332]]
ENST00000473601	[[64004723, 64004810], [64021323, 64021651], [64023302, 64023453]]	None
NM_178558	[[63980254, 63982878], [64004084, 64004180], [64004683, 64004810], [64023302, 64023505]]	[[63981538, 63982878], [64004084, 64004180], [64004683, 64004810], [64023302, 64023332]]
NM_001130022	[[63985033, 63986895], [64004084, 64004180], [64004683, 64004810], [64023302, 64023505]]	[[63986776, 63986895], [64004084, 64004180], [64004683, 64004810], [64023302, 64023332]]

Promoter

Chrom	Start	End	Description
chr7	64023410	64023428	CAGE_peak_2_at_ZNF680_5end
chr7	64023441	64023462	CAGE_peak_1_at_ZNF680_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I064541	64541195	64542427	0.63	[{'connected_gene': 'ZNF107', 'score': 14.16}, {'connected_gene': 'ZNF680P1', 'score': 7.17}, {'connected_gene': 'ZNF138', 'score': 5.47}, {'connected_gene': 'BNIP3P42', 'score': 0.44}, {'connected_gene': 'ZNF680', 'score': 0.34}, {'connected_gene': 'HNRNPCP7', 'score': 0.26}]
chr7	GH07I064558	64558007	64560904	0.79	[{'connected_gene': 'ZNF107', 'score': 8.86}, {'connected_gene': 'YWHAEP1', 'score': 7.42}, {'connected_gene': 'ZNF680P1', 'score': 7.13}, {'connected_gene': 'ZNF680', 'score': 0.77}, {'connected_gene': 'BNIP3P42', 'score': 0.44}]
chr7	GH07I064875	64875044	64875167	0.22	[{'connected_gene': 'EEF1DP4', 'score': 42.71}, {'connected_gene': 'ZNF117', 'score': 13.93}, {'connected_gene': 'ZNF680', 'score': 4.22}, {'connected_gene': 'ZNF273', 'score': 0.77}, {'connected_gene': 'LOC441239', 'score': 0.39}]
chr7	GH07I064894	64891907	64892131	0.84	[{'connected_gene': 'LOC441239', 'score': 550.77}, {'connected_gene': 'EEF1DP4', 'score': 4.41}, {'connected_gene': 'ZNF680', 'score': 4.18}, {'connected_gene': 'ZNF273', 'score': 0.34}, {'connected_gene': 'VN1R42P', 'score': 0.26}]
chr7	GH07I064562	64562001	64563800	1.98	[{'connected_gene': 'ZNF680', 'score': 550.77}, {'connected_gene': 'ZNF107', 'score': 14.28}, {'connected_gene': 'CCT6P3', 'score': 14.23}, {'connected_gene': 'GTF2IP14', 'score': 11.78}, {'connected_gene': 'ZNF736', 'score': 11.73}, {'connected_gene': 'GABPAP', 'score': 10.21}, {'connected_gene': 'ZNF117', 'score': 5.17}, {'connected_gene': 'LOC644387', 'score': 4.53}, {'connected_gene': 'BNIP3P42', 'score': 0.39}]
chr7	GH07I064561	64561201	64561400	0.2	[{'connected_gene': 'ZNF680', 'score': 550.77}, {'connected_gene': 'ZNF107', 'score': 5.59}, {'connected_gene': 'BNIP3P42', 'score': 0.44}]
chr7	GH07I064995	64995998	65007771	2.5	[{'connected_gene': 'ERV3-1', 'score': 588.2}, {'connected_gene': 'GTF2IP14', 'score': 61.02}, {'connected_gene': 'CCT6P3', 'score': 49.62}, {'connected_gene': 'INTS4P1', 'score': 33.81}, {'connected_gene': 'ZNF117', 'score': 18.18}, {'connected_gene': 'CCT6P1', 'score': 16.97}, {'connected_gene': 'VKORC1L1', 'score': 15.19}, {'connected_gene': 'ZNF736', 'score': 12.43}, {'connected_gene': 'ENSG00000227113', 'score': 12.28}, {'connected_gene': 'EEF1DP4', 'score': 6.58}, {'connected_gene': 'ZNF680', 'score': 4.33}, {'connected_gene': 'ZNF273', 'score': 3.91}, {'connected_gene': 'VN1R43P', 'score': 0.31}]
chr7	GH07I064305	64305921	64308540	1.65	[{'connected_gene': 'GC07P064309', 'score': 550.77}, {'connected_gene': 'LOC105375322', 'score': 550.77}, {'connected_gene': 'PIR31902', 'score': 550.77}, {'connected_gene': 'ZNF736', 'score': 550.77}, {'connected_gene': 'GUSBP6', 'score': 9.77}, {'connected_gene': 'ZNF680', 'score': 9.01}, {'connected_gene': 'YWHAEP1', 'score': 7.64}, {'connected_gene': 'ZNF680P1', 'score': 7.4}, {'connected_gene': 'TRIM60P18', 'score': 6.91}, {'connected_gene': 'SEPHS1P1', 'score': 5.16}, {'connected_gene': 'CCT6P3', 'score': 4.73}, {'connected_gene': 'ZNF107', 'score': 3.89}, {'connected_gene': 'LOC105375323', 'score': 0.39}]
chr7	GH07I064835	64835317	64835537	0.48	[{'connected_gene': 'ENSG00000234338', 'score': 550.77}, {'connected_gene': 'PIR39219', 'score': 550.77}, {'connected_gene': 'LOC101929322', 'score': 7.1}, {'connected_gene': 'ZNF680', 'score': 1.53}, {'connected_gene': 'ZNF138', 'score': 0.26}]