PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000371804	[[91152302, 91152474], [91162037, 91163745]]	[[91152469, 91152474], [91162037, 91163469]]
ENST00000546318	[[91158561, 91159760], [91162037, 91163607]]	[[91162125, 91163469]]
NM_001548	[[91152302, 91152474], [91162037, 91166244]]	[[91152469, 91152474], [91162037, 91163469]]
NM_001270929	[[91152302, 91152474], [91159651, 91159760], [91162037, 91166244]]	[[91162125, 91163469]]
NM_001270928	[[91152302, 91152474], [91159646, 91159760], [91162037, 91166244]]	[[91162125, 91163469]]
NM_001270927	[[91152302, 91152474], [91152863, 91152960], [91162037, 91166244]]	[[91152955, 91152960], [91162037, 91163469]]
NM_001270930	[[91152302, 91152474], [91152863, 91153098], [91162037, 91166244]]	[[91162125, 91163469]]

Promoter

Chrom	Start	End	Description
chr10	91152368	91152419	CAGE_peak_1_at_IFIT1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I089122	89122355	89123905	0.91	[{'connected_gene': 'CH25H', 'score': 10.82}, {'connected_gene': 'IFIT5', 'score': 10.77}, {'connected_gene': 'IFIT3', 'score': 7.34}, {'connected_gene': 'IFIT2', 'score': 6.78}, {'connected_gene': 'ANKRD22', 'score': 2.59}, {'connected_gene': 'IFIT1', 'score': 2.29}, {'connected_gene': 'LIPN', 'score': 1.55}, {'connected_gene': 'GC10P089110', 'score': 0.37}, {'connected_gene': 'LOC100289238', 'score': 0.37}]
chr10	GH10I089265	89265629	89266264	0.2	[{'connected_gene': 'IFIT1B', 'score': 11.77}, {'connected_gene': 'IFIT3', 'score': 11.2}, {'connected_gene': 'IFIT1', 'score': 11.17}, {'connected_gene': 'SLC16A12-AS1', 'score': 9.31}, {'connected_gene': 'IFIT5', 'score': 4.58}, {'connected_gene': 'IFIT2', 'score': 0.37}, {'connected_gene': 'GC10P089210', 'score': 0.22}, {'connected_gene': 'GC10M089235', 'score': 0.13}, {'connected_gene': 'LIPA', 'score': 0.11}]
chr10	GH10I089355	89355584	89355733	0.92	[{'connected_gene': 'IFIT1B', 'score': 11.97}, {'connected_gene': 'ENSG00000232110', 'score': 11.92}, {'connected_gene': 'IFIT3', 'score': 11.9}, {'connected_gene': 'IFIT1', 'score': 11.01}, {'connected_gene': 'IFIT6P', 'score': 0.44}, {'connected_gene': 'LOC101926887', 'score': 0.39}, {'connected_gene': 'GC10M089235', 'score': 0.31}, {'connected_gene': 'LIPA', 'score': 0.22}]
chr10	GH10I089406	89406738	89406859	0.22	[{'connected_gene': 'IFIT1B', 'score': 11.02}, {'connected_gene': 'IFIT1', 'score': 2.24}, {'connected_gene': 'IFIT2', 'score': 1.52}, {'connected_gene': 'GC10P089413', 'score': 0.44}, {'connected_gene': 'LIPA', 'score': 0.44}]
chr10	GH10I089291	89291043	89292254	0.31	[{'connected_gene': 'IFIT3', 'score': 11.9}, {'connected_gene': 'IFIT1B', 'score': 11.18}, {'connected_gene': 'IFIT1', 'score': 10.76}, {'connected_gene': 'FAS', 'score': 9.0}, {'connected_gene': 'ENSG00000232110', 'score': 0.44}, {'connected_gene': 'IFIT2', 'score': 0.44}, {'connected_gene': 'LOC105378419', 'score': 0.34}, {'connected_gene': 'GC10M089235', 'score': 0.17}, {'connected_gene': 'LIPA', 'score': 0.13}]
chr10	GH10I089384	89384401	89385600	0.51	[{'connected_gene': 'IFIT3', 'score': 11.71}, {'connected_gene': 'GC10M089235', 'score': 0.77}, {'connected_gene': 'IFIT1', 'score': 0.44}, {'connected_gene': 'IFIT1B', 'score': 0.44}, {'connected_gene': 'LIPA', 'score': 0.31}]
chr10	GH10I089260	89260004	89265043	1.53	[{'connected_gene': 'IFIT3', 'score': 16.68}, {'connected_gene': 'IFIT2', 'score': 15.92}, {'connected_gene': 'IFIT1', 'score': 13.4}, {'connected_gene': 'IFIT1B', 'score': 11.76}, {'connected_gene': 'SLC16A12-AS1', 'score': 9.31}, {'connected_gene': 'IFIT5', 'score': 7.55}, {'connected_gene': 'ENSG00000232110', 'score': 5.14}, {'connected_gene': 'GC10P089210', 'score': 0.23}, {'connected_gene': 'GC10M089235', 'score': 0.13}, {'connected_gene': 'LIPA', 'score': 0.1}]
chr10	GH10I089163	89163264	89164600	1.15	[{'connected_gene': 'IFIT3', 'score': 42.47}, {'connected_gene': 'IFIT2', 'score': 38.85}, {'connected_gene': 'IFIT5', 'score': 29.39}, {'connected_gene': 'IFIT1', 'score': 7.43}, {'connected_gene': 'CH25H', 'score': 5.44}, {'connected_gene': 'ANKRD22', 'score': 2.45}, {'connected_gene': 'FAS', 'score': 1.53}, {'connected_gene': 'GC10P089171', 'score': 0.44}, {'connected_gene': 'LOC100289238', 'score': 0.34}]
chr10	GH10I089295	89295017	89298034	1.2	[{'connected_gene': 'IFIT3', 'score': 54.04}, {'connected_gene': 'IFIT2', 'score': 40.86}, {'connected_gene': 'IFIT5', 'score': 36.17}, {'connected_gene': 'IFIT1', 'score': 18.4}, {'connected_gene': 'IFIT1B', 'score': 11.19}, {'connected_gene': 'FAS', 'score': 10.34}, {'connected_gene': 'ENSG00000232110', 'score': 0.39}, {'connected_gene': 'LOC105378419', 'score': 0.37}, {'connected_gene': 'GC10M089235', 'score': 0.18}, {'connected_gene': 'LIPA', 'score': 0.13}]
chr10	GH10I089234	89234464	89236013	0.86	[{'connected_gene': 'IFIT3', 'score': 29.88}, {'connected_gene': 'IFIT2', 'score': 23.62}, {'connected_gene': 'IFIT5', 'score': 19.69}, {'connected_gene': 'IFIT1', 'score': 4.54}, {'connected_gene': 'ANKRD22', 'score': 2.24}, {'connected_gene': 'FAS', 'score': 1.46}, {'connected_gene': 'GC10P089210', 'score': 0.31}, {'connected_gene': 'GC10M089235', 'score': 0.11}, {'connected_gene': 'LIPA', 'score': 0.1}]
chr10	GH10I089156	89156202	89156279	0.33	[{'connected_gene': 'IFIT3', 'score': 20.64}, {'connected_gene': 'IFIT2', 'score': 18.89}, {'connected_gene': 'IFIT5', 'score': 18.18}, {'connected_gene': 'IFIT1', 'score': 5.89}, {'connected_gene': 'LOC100289238', 'score': 0.37}, {'connected_gene': 'GC10P089171', 'score': 0.37}]
chr10	GH10I089330	89330107	89335327	2.11	[{'connected_gene': 'IFIT3', 'score': 550.77}, {'connected_gene': 'IFIT5', 'score': 23.17}, {'connected_gene': 'IFIT2', 'score': 11.83}, {'connected_gene': 'IFIT1B', 'score': 11.73}, {'connected_gene': 'ENSG00000232110', 'score': 11.7}, {'connected_gene': 'IFIT1', 'score': 11.28}, {'connected_gene': 'LOC101926887', 'score': 0.44}, {'connected_gene': 'GC10M089235', 'score': 0.25}, {'connected_gene': 'LIPA', 'score': 0.18}]
chr10	GH10I089326	89326186	89329839	2.12	[{'connected_gene': 'IFIT3', 'score': 550.77}, {'connected_gene': 'IFIT5', 'score': 26.28}, {'connected_gene': 'IFIT2', 'score': 11.84}, {'connected_gene': 'ENSG00000232110', 'score': 11.27}, {'connected_gene': 'IFIT1', 'score': 11.27}, {'connected_gene': 'LOC101926887', 'score': 0.39}, {'connected_gene': 'GC10M089235', 'score': 0.23}, {'connected_gene': 'LIPA', 'score': 0.17}]
chr10	GH10I089887	89887166	89890867	0.77	[{'connected_gene': 'IFIT1', 'score': 6.27}, {'connected_gene': 'HTR7', 'score': 4.9}, {'connected_gene': 'LINC00865', 'score': 4.83}, {'connected_gene': 'LIPA', 'score': 4.48}, {'connected_gene': 'GC10M089924', 'score': 0.28}, {'connected_gene': 'PIR54261', 'score': 0.25}]
chr10	GH10I089391	89391667	89394426	1.84	[{'connected_gene': 'IFIT1', 'score': 550.77}, {'connected_gene': 'IFIT5', 'score': 34.61}, {'connected_gene': 'ENSG00000232110', 'score': 10.35}, {'connected_gene': 'SLC16A12-AS1', 'score': 9.46}, {'connected_gene': 'GC10P089413', 'score': 0.34}, {'connected_gene': 'LIPA', 'score': 0.34}]
chr10	GH10I089392	89391004	89391153	0.43	[{'connected_gene': 'IFIT1', 'score': 550.77}, {'connected_gene': 'GC10M089235', 'score': 0.44}, {'connected_gene': 'LIPA', 'score': 0.34}]
chr10	GH10I089920	89920594	89922573	0.72	[{'connected_gene': 'IFIT1', 'score': 5.97}, {'connected_gene': 'GC10M089924', 'score': 0.77}, {'connected_gene': 'LINC01375', 'score': 0.28}, {'connected_gene': 'PIR54261', 'score': 0.18}]
chr10	GH10I089336	89336284	89336540	0.54	[{'connected_gene': 'IFIT2', 'score': 15.05}, {'connected_gene': 'IFIT1B', 'score': 11.75}, {'connected_gene': 'IFIT5', 'score': 11.64}, {'connected_gene': 'ENSG00000232110', 'score': 11.55}, {'connected_gene': 'IFIT3', 'score': 4.41}, {'connected_gene': 'IFIT1', 'score': 1.71}, {'connected_gene': 'LOC101926887', 'score': 0.44}, {'connected_gene': 'GC10M089235', 'score': 0.26}, {'connected_gene': 'LIPA', 'score': 0.18}]
chr10	GH10I089345	89345719	89353607	1.35	[{'connected_gene': 'IFIT5', 'score': 14.61}, {'connected_gene': 'IFIT3', 'score': 12.71}, {'connected_gene': 'KIF20B', 'score': 12.52}, {'connected_gene': 'IFIT1B', 'score': 11.94}, {'connected_gene': 'ENSG00000232110', 'score': 11.93}, {'connected_gene': 'IFIT2', 'score': 11.76}, {'connected_gene': 'IFIT1', 'score': 11.12}, {'connected_gene': 'LOC101926887', 'score': 0.44}, {'connected_gene': 'IFIT6P', 'score': 0.39}, {'connected_gene': 'GC10M089235', 'score': 0.29}, {'connected_gene': 'LIPA', 'score': 0.21}]
chr10	GH10I089367	89367319	89368471	0.87	[{'connected_gene': 'IFIT5', 'score': 15.17}, {'connected_gene': 'IFIT3', 'score': 11.84}, {'connected_gene': 'IFIT1', 'score': 11.54}, {'connected_gene': 'ENSG00000232110', 'score': 11.46}, {'connected_gene': 'LIPA', 'score': 10.59}, {'connected_gene': 'IFIT6P', 'score': 0.44}, {'connected_gene': 'IFIT1B', 'score': 0.39}, {'connected_gene': 'GC10M089235', 'score': 0.39}]
chr10	GH10I089368	89368878	89369813	0.96	[{'connected_gene': 'IFIT5', 'score': 20.53}, {'connected_gene': 'IFIT1', 'score': 15.97}, {'connected_gene': 'IFIT3', 'score': 11.84}, {'connected_gene': 'ENSG00000232110', 'score': 11.45}, {'connected_gene': 'IFIT2', 'score': 11.39}, {'connected_gene': 'LIPA', 'score': 10.59}, {'connected_gene': 'IFIT6P', 'score': 0.44}, {'connected_gene': 'IFIT1B', 'score': 0.44}, {'connected_gene': 'GC10M089235', 'score': 0.39}]
chr10	GH10I089337	89336893	89338067	1.09	[{'connected_gene': 'IFIT5', 'score': 26.29}, {'connected_gene': 'IFIT2', 'score': 24.19}, {'connected_gene': 'IFIT3', 'score': 14.03}, {'connected_gene': 'IFIT1B', 'score': 11.75}, {'connected_gene': 'ENSG00000232110', 'score': 11.55}, {'connected_gene': 'IFIT1', 'score': 4.01}, {'connected_gene': 'LOC101926887', 'score': 0.44}, {'connected_gene': 'GC10M089235', 'score': 0.26}, {'connected_gene': 'LIPA', 'score': 0.18}]
chr10	GH10I089363	89363084	89363173	0.65	[{'connected_gene': 'IFIT6P', 'score': 550.77}, {'connected_gene': 'IFIT3', 'score': 11.85}, {'connected_gene': 'IFIT1', 'score': 11.51}, {'connected_gene': 'ENSG00000232110', 'score': 11.46}, {'connected_gene': 'LIPA', 'score': 10.58}, {'connected_gene': 'IFIT5', 'score': 10.58}, {'connected_gene': 'IFIT1B', 'score': 0.39}, {'connected_gene': 'GC10M089235', 'score': 0.37}]
chr10	GH10I089412	89412404	89412533	0.56	[{'connected_gene': 'GC10P089413', 'score': 550.77}, {'connected_gene': 'IFIT1B', 'score': 11.07}, {'connected_gene': 'LIPA', 'score': 0.77}, {'connected_gene': 'IFIT1', 'score': 0.37}]
chr10	GH10I089398	89398201	89398400	0.43	[{'connected_gene': 'ENSG00000232110', 'score': 10.34}, {'connected_gene': 'SLC16A12-AS1', 'score': 9.47}, {'connected_gene': 'IFIT1', 'score': 0.44}, {'connected_gene': 'GC10P089413', 'score': 0.37}, {'connected_gene': 'LIPA', 'score': 0.37}]