PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000229135	[[68548547, 68549267], [68551692, 68551875], [68551970, 68552039], [68553281, 68553527]]	[[68549132, 68549267], [68551692, 68551875], [68551970, 68552039], [68553281, 68553395]]
NM_000619	[[68548549, 68549267], [68551692, 68551875], [68551970, 68552039], [68553281, 68553521]]	[[68549132, 68549267], [68551692, 68551875], [68551970, 68552039], [68553281, 68553395]]

Promoter

Chrom	Start	End	Description
chr12	68553512	68553528	CAGE_peak_1_at_IFNG_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I068609	68609341	68616000	2.73	[{'connected_gene': 'RAP1B', 'score': 565.92}, {'connected_gene': 'NUP107', 'score': 39.87}, {'connected_gene': 'CPSF6', 'score': 15.45}, {'connected_gene': 'MDM2', 'score': 14.02}, {'connected_gene': 'KRT8P39', 'score': 11.91}, {'connected_gene': 'CPM', 'score': 11.42}, {'connected_gene': 'LINC02384', 'score': 11.17}, {'connected_gene': 'MDM1', 'score': 11.14}, {'connected_gene': 'RPL10P12', 'score': 11.07}, {'connected_gene': 'IFNG', 'score': 1.11}, {'connected_gene': 'GC12P068625', 'score': 0.39}]
chr12	GH12I068361	68361835	68368841	1.76	[{'connected_gene': 'NUP107', 'score': 27.3}, {'connected_gene': 'MDM1', 'score': 12.41}, {'connected_gene': 'LINC02384', 'score': 12.28}, {'connected_gene': 'SNORA70G', 'score': 11.76}, {'connected_gene': 'RPL10P12', 'score': 11.76}, {'connected_gene': 'CPSF6', 'score': 11.03}, {'connected_gene': 'KRT8P39', 'score': 10.96}, {'connected_gene': 'RPL7P42', 'score': 10.69}, {'connected_gene': 'LOC100507250', 'score': 10.69}, {'connected_gene': 'RAP1B', 'score': 4.96}, {'connected_gene': 'IFNG', 'score': 1.66}, {'connected_gene': 'ENSG00000256273', 'score': 0.34}, {'connected_gene': 'GC12P068422', 'score': 0.22}]
chr12	GH12I068079	68079969	68080165	0.2	[{'connected_gene': 'IFNG', 'score': 11.59}, {'connected_gene': 'GC12P068096', 'score': 0.37}, {'connected_gene': 'HNRNPA1P70', 'score': 0.26}, {'connected_gene': 'IFNG-AS1', 'score': 0.16}]
chr12	GH12I068163	68163599	68164058	0.46	[{'connected_gene': 'IFNG', 'score': 0.77}, {'connected_gene': 'LOC105369818', 'score': 0.29}, {'connected_gene': 'IL26', 'score': 0.21}, {'connected_gene': 'IFNG-AS1', 'score': 0.09}]
chr12	GH12I068080	68080455	68081159	0.38	[{'connected_gene': 'IFNG', 'score': 11.59}, {'connected_gene': 'IFNG-AS1', 'score': 5.82}, {'connected_gene': 'GC12P068096', 'score': 0.37}, {'connected_gene': 'HNRNPA1P70', 'score': 0.25}]
chr12	GH12I068372	68372795	68373447	1.11	[{'connected_gene': 'PRELID2P1', 'score': 5.49}, {'connected_gene': 'IFNG', 'score': 2.7}, {'connected_gene': 'RAP1B', 'score': 1.34}, {'connected_gene': 'ENSG00000256273', 'score': 0.31}, {'connected_gene': 'GC12P068422', 'score': 0.25}, {'connected_gene': 'LINC02384', 'score': 0.18}]
chr12	GH12I068174	68174993	68177904	0.83	[{'connected_gene': 'LINC02421', 'score': 14.32}, {'connected_gene': 'IL26', 'score': 10.32}, {'connected_gene': 'MDM1', 'score': 5.03}, {'connected_gene': 'LINC01479', 'score': 4.82}, {'connected_gene': 'IFNG', 'score': 0.37}, {'connected_gene': 'LOC105369818', 'score': 0.34}, {'connected_gene': 'IFNG-AS1', 'score': 0.09}]
chr12	GH12I068189	68189749	68190587	0.46	[{'connected_gene': 'LINC02421', 'score': 13.92}, {'connected_gene': 'IL26', 'score': 10.39}, {'connected_gene': 'LOC105369818', 'score': 0.44}, {'connected_gene': 'IFNG', 'score': 0.29}, {'connected_gene': 'IFNG-AS1', 'score': 0.08}]
chr12	GH12I068180	68180598	68182079	0.56	[{'connected_gene': 'LINC02421', 'score': 10.78}, {'connected_gene': 'LOC105369818', 'score': 0.37}, {'connected_gene': 'IFNG', 'score': 0.34}, {'connected_gene': 'IL26', 'score': 0.26}, {'connected_gene': 'IFNG-AS1', 'score': 0.08}]
chr12	GH12I067988	67988430	67993227	1.4	[{'connected_gene': 'IFNG-AS1', 'score': 567.46}, {'connected_gene': 'LINC01479', 'score': 10.47}, {'connected_gene': 'IFNG', 'score': 4.2}, {'connected_gene': 'IL22', 'score': 2.27}, {'connected_gene': 'DYRK2', 'score': 2.04}, {'connected_gene': 'GC12P067986', 'score': 0.77}, {'connected_gene': 'RPL39P28', 'score': 0.39}]
chr12	GH12I068480	68480924	68484293	1.48	[{'connected_gene': 'LINC02384', 'score': 31.56}, {'connected_gene': 'IFNG', 'score': 13.34}, {'connected_gene': 'NUP107', 'score': 6.4}, {'connected_gene': 'ENSG00000256917', 'score': 0.44}, {'connected_gene': 'PSMC6P2', 'score': 0.44}]
chr12	GH12I068159	68158561	68158710	0.46	[{'connected_gene': 'GC12M068159', 'score': 550.77}, {'connected_gene': 'IFNG', 'score': 550.77}, {'connected_gene': 'GC12M068160', 'score': 550.77}, {'connected_gene': 'GC12P068143', 'score': 0.37}, {'connected_gene': 'IFNG-AS1', 'score': 0.1}]
chr12	GH12I068158	68158902	68160355	1.06	[{'connected_gene': 'GC12M068159', 'score': 550.77}, {'connected_gene': 'IFNG', 'score': 550.77}, {'connected_gene': 'GC12M068160', 'score': 550.77}, {'connected_gene': 'GC12P068143', 'score': 0.37}, {'connected_gene': 'IFNG-AS1', 'score': 0.09}]