PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000375353	[[114462215, 114462288], [114469087, 114469230], [114472070, 114472133], [114498120, 114498210], [114502311, 114502392], [114503799, 114503885], [114504625, 114504785], [114507857, 114508001], [114514708, 114514899]]	[[114462242, 114462288], [114469087, 114469230], [114472070, 114472133], [114498120, 114498210], [114502311, 114502392], [114503799, 114503885], [114504625, 114504785], [114507857, 114508001], [114514708, 114514876]]
ENST00000488362	[[114469087, 114469230], [114472070, 114472133], [114498120, 114498210], [114502311, 114502633]]	None
ENST00000483678	[[114469136, 114469230], [114472070, 114472133], [114472565, 114472788]]	None
ENST00000375348	[[114471108, 114471238], [114471859, 114471942], [114472070, 114472133], [114498120, 114498210], [114502311, 114502392], [114502790, 114502830]]	[[114471108, 114471238], [114471859, 114471942], [114472070, 114472133], [114498120, 114498210], [114502311, 114502392], [114502790, 114502830]]
ENST00000498692	[[114502860, 114503044], [114503799, 114503838], [114504625, 114504785], [114507857, 114507863]]	None
ENST00000467169	[[114506022, 114506305], [114507857, 114508001], [114514708, 114514926]]	None
NM_182614	[[114462215, 114462288], [114469087, 114469230], [114472070, 114472133], [114498120, 114498210], [114502311, 114502392], [114503799, 114503885], [114504625, 114504785], [114507857, 114508001], [114514708, 114514899]]	[[114462242, 114462288], [114469087, 114469230], [114472070, 114472133], [114498120, 114498210], [114502311, 114502392], [114503799, 114503885], [114504625, 114504785], [114507857, 114508001], [114514708, 114514876]]

Promoter

Chrom	Start	End	Description
chr13	114462172	114462186	CAGE_peak_2_at_FAM70B_5end
chr13	114462193	114462251	CAGE_peak_1_at_FAM70B_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I113774	113774328	113774477	0.57	[{'connected_gene': 'CDC16', 'score': 18.2}, {'connected_gene': 'UPF3A', 'score': 14.54}, {'connected_gene': 'TMEM255B', 'score': 0.37}, {'connected_gene': 'GAS6-AS1', 'score': 0.26}]
chr13	GH13I113646	113646171	113646850	0.31	[{'connected_gene': 'CDC16', 'score': 20.99}, {'connected_gene': 'GRK1', 'score': 20.48}, {'connected_gene': 'PCID2', 'score': 14.14}, {'connected_gene': 'CHAMP1', 'score': 10.1}, {'connected_gene': 'DCUN1D2', 'score': 9.16}, {'connected_gene': 'DCUN1D2-AS', 'score': 9.16}, {'connected_gene': 'TMEM255B', 'score': 5.47}, {'connected_gene': 'PIR44469', 'score': 0.44}, {'connected_gene': 'GC13P113655', 'score': 0.44}, {'connected_gene': 'PIR60549', 'score': 0.23}]
chr13	GH13I113813	113813530	113814033	0.31	[{'connected_gene': 'GAS6-AS1', 'score': 561.19}, {'connected_gene': 'TMEM255B', 'score': 30.82}]
chr13	GH13I113842	113842995	113844628	0.31	[{'connected_gene': 'GAS6-AS1', 'score': 7.35}, {'connected_gene': 'GAS6', 'score': 7.11}, {'connected_gene': 'TMEM255B', 'score': 4.45}, {'connected_gene': 'LOC105370380', 'score': 0.31}]
chr13	GH13I113848	113848366	113850551	0.82	[{'connected_gene': 'GAS6-AS1', 'score': 8.67}, {'connected_gene': 'GAS6', 'score': 4.77}, {'connected_gene': 'TMEM255B', 'score': 4.73}, {'connected_gene': 'LOC105370380', 'score': 0.29}]
chr13	GH13I113656	113656983	113658953	0.93	[{'connected_gene': 'ATP4B', 'score': 550.77}, {'connected_gene': 'GRK1', 'score': 8.77}, {'connected_gene': 'TMEM255B', 'score': 5.05}, {'connected_gene': 'TMCO3', 'score': 4.81}, {'connected_gene': 'LINC00552', 'score': 4.71}, {'connected_gene': 'PIR44469', 'score': 0.77}, {'connected_gene': 'GC13P113655', 'score': 0.77}]
chr13	GH13I113835	113835464	113841636	1.25	[{'connected_gene': 'TMEM255B', 'score': 21.47}, {'connected_gene': 'CDC16', 'score': 17.77}, {'connected_gene': 'PCID2', 'score': 15.43}, {'connected_gene': 'CHAMP1', 'score': 11.51}, {'connected_gene': 'GAS6-AS1', 'score': 9.17}, {'connected_gene': 'GAS6', 'score': 5.37}, {'connected_gene': 'LOC105370380', 'score': 0.34}]
chr13	GH13I113772	113772045	113772249	0.56	[{'connected_gene': 'TMEM255B', 'score': 45.72}, {'connected_gene': 'CDC16', 'score': 21.01}, {'connected_gene': 'PCID2', 'score': 14.12}, {'connected_gene': 'CHAMP1', 'score': 10.11}, {'connected_gene': 'GAS6-AS1', 'score': 0.26}]
chr13	GH13I113758	113758375	113760984	2.08	[{'connected_gene': 'TMEM255B', 'score': 596.18}, {'connected_gene': 'PIR45723', 'score': 550.77}, {'connected_gene': 'UPF3A', 'score': 4.56}, {'connected_gene': 'GAS6-AS1', 'score': 0.22}]
chr13	GH13I113825	113825109	113826454	0.2	[{'connected_gene': 'TMEM255B', 'score': 24.07}, {'connected_gene': 'GAS6-AS1', 'score': 11.3}, {'connected_gene': 'GRK1', 'score': 4.91}, {'connected_gene': 'LOC105370380', 'score': 0.44}, {'connected_gene': 'GAS6', 'score': 0.28}]
chr13	GH13I113765	113765608	113765717	0.38	[{'connected_gene': 'TMEM255B', 'score': 43.7}, {'connected_gene': 'GAS6-AS1', 'score': 0.25}]
chr13	GH13I113784	113784420	113785668	0.46	[{'connected_gene': 'TMEM255B', 'score': 44.23}, {'connected_gene': 'GRK1', 'score': 5.19}, {'connected_gene': 'GAS6-AS1', 'score': 0.29}]
chr13	GH13I113724	113724403	113727041	1.38	[{'connected_gene': 'TMEM255B', 'score': 28.18}, {'connected_gene': 'GRK1', 'score': 10.94}, {'connected_gene': 'DCUN1D2', 'score': 4.76}, {'connected_gene': 'LINC00552', 'score': 0.31}, {'connected_gene': 'GC13M113749', 'score': 0.31}]
chr13	GH13I113745	113745698	113746827	0.72	[{'connected_gene': 'TMEM255B', 'score': 33.8}, {'connected_gene': 'GRK1', 'score': 9.94}, {'connected_gene': 'LINC00552', 'score': 0.77}, {'connected_gene': 'GC13M113749', 'score': 0.77}, {'connected_gene': 'LOC105377805', 'score': 0.44}]
chr13	GH13I113801	113801259	113802957	0.38	[{'connected_gene': 'TMEM255B', 'score': 46.73}, {'connected_gene': 'TMCO3', 'score': 5.92}, {'connected_gene': 'GAS6-AS1', 'score': 0.39}]
chr13	GH13I113651	113651903	113652631	0.2	[{'connected_gene': 'TMEM255B', 'score': 18.35}, {'connected_gene': 'PIR44469', 'score': 0.77}, {'connected_gene': 'GC13P113655', 'score': 0.77}, {'connected_gene': 'ATP4B', 'score': 0.44}, {'connected_gene': 'PIR60549', 'score': 0.22}]
chr13	GH13I113830	113830703	113831611	0.2	[{'connected_gene': 'TMEM255B', 'score': 10.96}, {'connected_gene': 'GAS6', 'score': 4.68}, {'connected_gene': 'GRK1', 'score': 4.66}, {'connected_gene': 'LINC00565', 'score': 4.5}, {'connected_gene': 'LOC105370380', 'score': 0.39}, {'connected_gene': 'GAS6-AS1', 'score': 0.37}]
chr13	GH13I113843	113842249	113842887	0.2	[{'connected_gene': 'TMEM255B', 'score': 8.12}, {'connected_gene': 'GAS6', 'score': 0.34}, {'connected_gene': 'LOC105370380', 'score': 0.31}, {'connected_gene': 'GAS6-AS1', 'score': 0.31}]
chr13	GH13I113874	113874397	113875724	0.46	[{'connected_gene': 'TMEM255B', 'score': 4.68}, {'connected_gene': 'ENSG00000237699', 'score': 0.77}, {'connected_gene': 'GAS6-AS2', 'score': 0.39}]
chr13	GH13I113736	113736201	113737061	0.76	[{'connected_gene': 'TMEM255B', 'score': 28.77}, {'connected_gene': 'LINC00552', 'score': 0.39}, {'connected_gene': 'GC13M113749', 'score': 0.39}, {'connected_gene': 'GRK1', 'score': 0.2}]
chr13	GH13I113728	113728753	113730087	0.54	[{'connected_gene': 'TMEM255B', 'score': 31.7}, {'connected_gene': 'LINC00552', 'score': 0.34}, {'connected_gene': 'GC13M113749', 'score': 0.34}, {'connected_gene': 'GRK1', 'score': 0.21}]
chr13	GH13I113859	113859151	113865108	2.58	[{'connected_gene': 'GAS6', 'score': 572.04}, {'connected_gene': 'CDC16', 'score': 28.74}, {'connected_gene': 'UPF3A', 'score': 11.37}, {'connected_gene': 'GAS6-AS1', 'score': 6.15}, {'connected_gene': 'TMEM255B', 'score': 4.75}, {'connected_gene': 'GAS6-AS2', 'score': 0.77}, {'connected_gene': 'LOC105370380', 'score': 0.26}]
chr13	GH13I112942	112942347	112944221	1.46	[{'connected_gene': 'MCF2L', 'score': 42.69}, {'connected_gene': 'TMEM255B', 'score': 5.9}, {'connected_gene': 'GC13P112922', 'score': 0.34}, {'connected_gene': 'ENSG00000267868', 'score': 0.34}]
chr13	GH13I113030	113030143	113032437	0.46	[{'connected_gene': 'MCF2L', 'score': 19.5}, {'connected_gene': 'MCF2L-AS1', 'score': 11.14}, {'connected_gene': 'F10', 'score': 10.71}, {'connected_gene': 'F10-AS1', 'score': 10.7}, {'connected_gene': 'KARSP2', 'score': 10.7}, {'connected_gene': 'PROZ', 'score': 10.11}, {'connected_gene': 'TMEM255B', 'score': 4.47}, {'connected_gene': 'ENSG00000269376', 'score': 0.34}, {'connected_gene': 'PIR52168', 'score': 0.26}]
chr13	GH13I113815	113815066	113823088	1.56	[{'connected_gene': 'LOC105370380', 'score': 550.77}, {'connected_gene': 'TMEM255B', 'score': 49.93}, {'connected_gene': 'CDC16', 'score': 13.66}, {'connected_gene': 'GAS6-AS1', 'score': 12.76}, {'connected_gene': 'UPF3A', 'score': 11.15}, {'connected_gene': 'ADPRHL1', 'score': 7.71}, {'connected_gene': 'GAS6', 'score': 0.25}]