PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000357484	[[90443158, 90445035], [90446447, 90446611], [90447008, 90447215], [90451511, 90451644], [90453975, 90454051], [90455975, 90456188]]	[[90445026, 90445035], [90446447, 90446611], [90447008, 90447215], [90451511, 90451644], [90453975, 90454051], [90455975, 90456067]]
ENST00000460685	[[90444106, 90445035], [90446447, 90446611], [90447008, 90447215], [90451511, 90451644], [90453975, 90454051], [90455283, 90455919]]	[[90445026, 90445035], [90446447, 90446611], [90447008, 90447215], [90451511, 90451524]]
ENST00000560096	[[90446080, 90446611], [90447008, 90447175]]	[[90446369, 90446611], [90447008, 90447175]]
NM_001282380	[[90439763, 90445035], [90446447, 90446611], [90447008, 90447215], [90451511, 90451644], [90453975, 90454051], [90455283, 90455919]]	[[90445026, 90445035], [90446447, 90446611], [90447008, 90447215], [90451511, 90451524]]
NM_182616	[[90439763, 90445035], [90446447, 90446611], [90447008, 90447215], [90451511, 90451644], [90453975, 90454051], [90455975, 90456222]]	[[90445026, 90445035], [90446447, 90446611], [90447008, 90447215], [90451511, 90451644], [90453975, 90454051], [90455975, 90456067]]

Promoter

Chrom	Start	End	Description
chr15	90456156	90456198	CAGE_peak_1_at_C15orf38_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I090398	90398202	90409399	1.77	[{'connected_gene': 'IQGAP1', 'score': 35.3}, {'connected_gene': 'ZNF774', 'score': 24.07}, {'connected_gene': 'CRTC3', 'score': 16.89}, {'connected_gene': 'RPL36AP43', 'score': 12.02}, {'connected_gene': 'ENSG00000259212', 'score': 11.41}, {'connected_gene': 'GABARAPL3', 'score': 11.23}, {'connected_gene': 'VPS33B', 'score': 10.59}, {'connected_gene': 'ARPIN', 'score': 10.45}, {'connected_gene': 'CIB1', 'score': 4.43}, {'connected_gene': 'ZNF710', 'score': 3.98}, {'connected_gene': 'FES', 'score': 2.29}, {'connected_gene': 'GDPGP1', 'score': 1.14}, {'connected_gene': 'ENSG00000259177', 'score': 0.44}, {'connected_gene': 'GC15P090381', 'score': 0.34}, {'connected_gene': 'GC15P090443', 'score': 0.28}]
chr15	GH15I089975	89975601	89976800	0.74	[{'connected_gene': 'ZNF710', 'score': 14.24}, {'connected_gene': 'MESP1', 'score': 10.18}, {'connected_gene': 'ARPIN', 'score': 1.34}, {'connected_gene': 'ENSG00000280377', 'score': 0.31}]
chr15	GH15I089997	89997925	90006282	2.69	[{'connected_gene': 'ZNF710', 'score': 557.94}, {'connected_gene': 'FANCI', 'score': 22.96}, {'connected_gene': 'NIFKP5', 'score': 13.96}, {'connected_gene': 'ENSG00000259212', 'score': 13.26}, {'connected_gene': 'ENSG00000259314', 'score': 13.0}, {'connected_gene': 'UNC45A', 'score': 12.97}, {'connected_gene': 'POLG', 'score': 12.8}, {'connected_gene': 'ENSG00000228998', 'score': 10.99}, {'connected_gene': 'PRC1', 'score': 10.73}, {'connected_gene': 'TICRR', 'score': 10.09}, {'connected_gene': 'IQGAP1', 'score': 7.4}, {'connected_gene': 'ARPIN', 'score': 5.36}, {'connected_gene': 'ANPEP', 'score': 1.24}, {'connected_gene': 'MIR3174', 'score': 0.77}]
chr15	GH15I089910	89910569	89914457	2.08	[{'connected_gene': 'ARPIN', 'score': 607.44}, {'connected_gene': 'C15orf38-AP3S2', 'score': 550.77}, {'connected_gene': 'POLG', 'score': 19.76}, {'connected_gene': 'LOC100631255', 'score': 14.5}, {'connected_gene': 'GC15P089898', 'score': 0.39}]
chr15	GH15I089917	89917629	89918498	0.69	[{'connected_gene': 'ARPIN', 'score': 34.82}, {'connected_gene': 'C15orf38-AP3S2', 'score': 0.44}, {'connected_gene': 'LOC100421368', 'score': 0.37}]
chr15	GH15I089361	89361810	89361919	1.11	[{'connected_gene': 'MIR9-3HG', 'score': 550.77}, {'connected_gene': 'ARPIN', 'score': 13.06}, {'connected_gene': 'RPL36AP43', 'score': 12.57}, {'connected_gene': 'ENSG00000173867', 'score': 11.93}, {'connected_gene': 'POLG', 'score': 11.87}, {'connected_gene': 'NIFKP5', 'score': 11.45}, {'connected_gene': 'GC15P089369', 'score': 0.44}, {'connected_gene': 'GC15P089367', 'score': 0.44}]
chr15	GH15I090860	90860392	90861087	0.94	[{'connected_gene': 'FES', 'score': 31.37}, {'connected_gene': 'NIFKP5', 'score': 16.88}, {'connected_gene': 'ENSG00000200677', 'score': 11.18}, {'connected_gene': 'MAN2A2', 'score': 11.15}, {'connected_gene': 'ARPIN', 'score': 10.46}, {'connected_gene': 'RN7SL363P', 'score': 0.77}, {'connected_gene': 'GC15P090862', 'score': 0.77}]
chr15	GH15I089898	89898601	89899980	1.18	[{'connected_gene': 'RNU7-111P', 'score': 550.77}, {'connected_gene': 'GC15P089898', 'score': 550.77}, {'connected_gene': 'AP3S2', 'score': 57.33}, {'connected_gene': 'ANPEP', 'score': 5.67}, {'connected_gene': 'ARPIN', 'score': 2.39}, {'connected_gene': 'C15orf38-AP3S2', 'score': 0.39}]
chr15	GH15I090263	90263917	90267581	2.07	[{'connected_gene': 'CIB1', 'score': 550.77}, {'connected_gene': 'NGRN', 'score': 550.77}, {'connected_gene': 'ENSG00000275674', 'score': 550.77}, {'connected_gene': 'ENSG00000228998', 'score': 15.55}, {'connected_gene': 'TTLL13P', 'score': 13.26}, {'connected_gene': 'ARPIN', 'score': 13.08}, {'connected_gene': 'RPL36AP43', 'score': 12.55}, {'connected_gene': 'NIFKP5', 'score': 11.79}, {'connected_gene': 'GDPGP1', 'score': 11.32}, {'connected_gene': 'GABARAPL3', 'score': 10.12}, {'connected_gene': 'CRTC3', 'score': 9.94}, {'connected_gene': 'ZNF774', 'score': 9.6}, {'connected_gene': 'ENSG00000261147', 'score': 0.37}, {'connected_gene': 'ENSG00000284626', 'score': 0.29}]
chr15	GH15I089892	89892772	89895042	2.15	[{'connected_gene': 'AP3S2', 'score': 564.22}, {'connected_gene': 'POLG', 'score': 65.57}, {'connected_gene': 'ENSG00000259314', 'score': 42.43}, {'connected_gene': 'LOC100631255', 'score': 35.45}, {'connected_gene': 'NIFKP5', 'score': 29.49}, {'connected_gene': 'FANCI', 'score': 24.76}, {'connected_gene': 'ENSG00000259212', 'score': 22.82}, {'connected_gene': 'RPL36AP43', 'score': 22.75}, {'connected_gene': 'KIF7', 'score': 22.7}, {'connected_gene': 'ARPIN', 'score': 21.28}, {'connected_gene': 'WDR93', 'score': 13.56}, {'connected_gene': 'CRTC3', 'score': 12.9}, {'connected_gene': 'TICRR', 'score': 10.11}, {'connected_gene': 'MFGE8', 'score': 10.1}, {'connected_gene': 'GC15M089889', 'score': 0.44}, {'connected_gene': 'PIR40995', 'score': 0.44}, {'connected_gene': 'C15orf38-AP3S2', 'score': 0.37}]
chr15	GH15I089855	89855935	89866501	1.08	[{'connected_gene': 'AP3S2', 'score': 72.79}, {'connected_gene': 'RNU6-1111P', 'score': 12.18}, {'connected_gene': 'RNU7-111P', 'score': 12.15}, {'connected_gene': 'C15orf38-AP3S2', 'score': 12.1}, {'connected_gene': 'ARPIN', 'score': 12.1}, {'connected_gene': 'MESP2', 'score': 11.8}, {'connected_gene': 'MESP1', 'score': 11.74}, {'connected_gene': 'ZNF710', 'score': 10.91}, {'connected_gene': 'PLIN1', 'score': 10.45}, {'connected_gene': 'ANPEP', 'score': 8.3}, {'connected_gene': 'MIR5094', 'score': 0.39}, {'connected_gene': 'LOC100631255', 'score': 0.39}]
chr15	GH15I089936	89936010	89936766	0.38	[{'connected_gene': 'LOC100421368', 'score': 550.77}, {'connected_gene': 'ARPIN', 'score': 0.34}, {'connected_gene': 'C15orf38-AP3S2', 'score': 0.34}]
chr15	GH15I089383	89383250	89384159	1.12	[{'connected_gene': 'RPL36AP43', 'score': 76.42}, {'connected_gene': 'NIFKP5', 'score': 74.01}, {'connected_gene': 'ENSG00000173867', 'score': 53.41}, {'connected_gene': 'ARPIN', 'score': 44.74}, {'connected_gene': 'ENSG00000228998', 'score': 18.96}, {'connected_gene': 'POLG', 'score': 11.22}, {'connected_gene': 'WDR93', 'score': 10.9}, {'connected_gene': 'DET1', 'score': 9.75}, {'connected_gene': 'MIR9-3HG', 'score': 9.02}, {'connected_gene': 'GC15P089381', 'score': 0.77}, {'connected_gene': 'PIR56199', 'score': 0.39}]
chr15	GH15I089412	89412870	89413666	0.49	[{'connected_gene': 'ENSG00000173867', 'score': 19.85}, {'connected_gene': 'RPL36AP43', 'score': 13.69}, {'connected_gene': 'MIR9-3', 'score': 12.36}, {'connected_gene': 'MIR9-3HG', 'score': 12.35}, {'connected_gene': 'KIF7', 'score': 12.28}, {'connected_gene': 'DET1', 'score': 12.03}, {'connected_gene': 'ARPIN', 'score': 10.07}, {'connected_gene': 'GC15M089390', 'score': 0.39}, {'connected_gene': 'LOC105371031', 'score': 0.39}]
chr15	GH15I089204	89204503	89205625	0.31	[{'connected_gene': 'GC15P089217', 'score': 550.77}, {'connected_gene': 'GC15P089216', 'score': 550.77}, {'connected_gene': 'GC15P089215', 'score': 550.77}, {'connected_gene': 'ENSG00000173867', 'score': 19.85}, {'connected_gene': 'RPL36AP43', 'score': 13.67}, {'connected_gene': 'KIF7', 'score': 12.26}, {'connected_gene': 'DET1', 'score': 12.04}, {'connected_gene': 'FANCI', 'score': 11.87}, {'connected_gene': 'ARPIN', 'score': 10.05}, {'connected_gene': 'POLG', 'score': 9.98}]