PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000451137	[[86046443, 86046730], [86047047, 86047261], [86047610, 86047967], [86048098, 86048307], [86048422, 86049645]]	[[86046667, 86046730], [86047047, 86047261], [86047610, 86047967], [86048098, 86048307], [86048422, 86048725]]
ENST00000480413	[[86046882, 86047261], [86047610, 86047782]]	None
NM_001554	[[86046443, 86046730], [86047047, 86047261], [86047610, 86047967], [86048098, 86048307], [86048422, 86049650]]	[[86046667, 86046730], [86047047, 86047261], [86047610, 86047967], [86048098, 86048307], [86048422, 86048725]]

Promoter

Chrom	Start	End	Description
chr1	86046433	86046453	CAGE_peak_1_at_CYR61_5end
chr1	86047023	86047087	CAGE_peak_3_at_CYR61_5end
chr1	86047201	86047223	CAGE_peak_2_at_CYR61_5end
chr1	86048594	86048615	CAGE_peak_10_at_CYR61_5end
chr1	86048713	86048750	CAGE_peak_4_at_CYR61_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I085706	85706796	85709617	2.07	[{'connected_gene': 'ZNHIT6', 'score': 572.52}, {'connected_gene': 'ODF2L', 'score': 12.28}, {'connected_gene': 'DDAH1', 'score': 10.04}, {'connected_gene': 'CYR61', 'score': 10.04}, {'connected_gene': 'PIR53460', 'score': 0.23}]
chr1	GH01I085520	85520315	85527887	1.66	[{'connected_gene': 'ZNHIT6', 'score': 28.84}, {'connected_gene': 'CYR61', 'score': 13.18}, {'connected_gene': 'DDAH1', 'score': 12.12}, {'connected_gene': 'C1orf52', 'score': 10.87}, {'connected_gene': 'ENSG00000282057', 'score': 0.23}, {'connected_gene': 'ENSG00000273264', 'score': 0.22}]
chr1	GH01I085616	85616932	85618576	0.4	[{'connected_gene': 'ZNHIT6', 'score': 15.27}, {'connected_gene': 'ENSG00000199934', 'score': 12.27}, {'connected_gene': 'DDAH1', 'score': 11.78}, {'connected_gene': 'CYR61', 'score': 11.78}, {'connected_gene': 'GC01P085628', 'score': 0.39}, {'connected_gene': 'ENSG00000230285', 'score': 0.37}]
chr1	GH01I085631	85631066	85632993	0.2	[{'connected_gene': 'ZNHIT6', 'score': 16.85}, {'connected_gene': 'DDAH1', 'score': 10.93}, {'connected_gene': 'CYR61', 'score': 10.93}, {'connected_gene': 'GC01P085628', 'score': 0.77}, {'connected_gene': 'PIR53460', 'score': 0.34}]
chr1	GH01I085680	85680908	85681907	0.79	[{'connected_gene': 'ZNHIT6', 'score': 17.34}, {'connected_gene': 'DDAH1', 'score': 10.56}, {'connected_gene': 'CYR61', 'score': 10.56}, {'connected_gene': 'PIR53460', 'score': 0.31}]
chr1	GH01I085604	85604570	85614535	1.65	[{'connected_gene': 'CYR61', 'score': 17.74}, {'connected_gene': 'ZNHIT6', 'score': 16.16}, {'connected_gene': 'DDAH1', 'score': 14.68}, {'connected_gene': 'ODF2L', 'score': 11.33}, {'connected_gene': 'ENSG00000230285', 'score': 0.39}, {'connected_gene': 'GC01P085628', 'score': 0.37}]
chr1	GH01I085296	85296749	85299840	1.43	[{'connected_gene': 'DDAH1', 'score': 20.88}, {'connected_gene': 'BCL10', 'score': 16.41}, {'connected_gene': 'C1orf52', 'score': 13.65}, {'connected_gene': 'LOC646626', 'score': 11.69}, {'connected_gene': 'CYR61', 'score': 10.54}, {'connected_gene': 'GC01P085392', 'score': 0.16}]
chr1	GH01I085459	85459392	85466468	2.18	[{'connected_gene': 'DDAH1', 'score': 579.73}, {'connected_gene': 'ODF2L', 'score': 11.47}, {'connected_gene': 'CYR61', 'score': 10.18}, {'connected_gene': 'ENSG00000273264', 'score': 0.77}, {'connected_gene': 'GC01M085455', 'score': 0.44}]
chr1	GH01I085313	85313168	85317183	1.4	[{'connected_gene': 'DDAH1', 'score': 27.87}, {'connected_gene': 'CYR61', 'score': 10.64}, {'connected_gene': 'BCL10', 'score': 5.19}, {'connected_gene': 'LOC646626', 'score': 0.28}, {'connected_gene': 'GC01P085392', 'score': 0.18}]
chr1	GH01I085310	85310547	85312809	0.31	[{'connected_gene': 'DDAH1', 'score': 24.74}, {'connected_gene': 'CYR61', 'score': 11.61}, {'connected_gene': 'BCL10', 'score': 6.24}, {'connected_gene': 'LOC646626', 'score': 0.28}, {'connected_gene': 'GC01P085392', 'score': 0.18}]
chr1	GH01I085325	85325475	85333290	1.69	[{'connected_gene': 'DDAH1', 'score': 17.03}, {'connected_gene': 'CYR61', 'score': 3.7}, {'connected_gene': 'LOC646626', 'score': 0.23}, {'connected_gene': 'BCL10', 'score': 0.23}, {'connected_gene': 'GC01P085392', 'score': 0.21}]
chr1	GH01I085294	85294441	85296221	0.63	[{'connected_gene': 'DDAH1', 'score': 20.67}, {'connected_gene': 'CYR61', 'score': 10.54}, {'connected_gene': 'LOC646626', 'score': 0.37}, {'connected_gene': 'BCL10', 'score': 0.37}, {'connected_gene': 'GC01P085392', 'score': 0.15}]
chr1	GH01I085307	85307578	85309332	1.29	[{'connected_gene': 'DDAH1', 'score': 16.92}, {'connected_gene': 'CYR61', 'score': 11.61}, {'connected_gene': 'LOC646626', 'score': 0.29}, {'connected_gene': 'BCL10', 'score': 0.29}, {'connected_gene': 'GC01P085392', 'score': 0.18}]
chr1	GH01I085289	85289146	85291697	1.12	[{'connected_gene': 'DDAH1', 'score': 18.77}, {'connected_gene': 'CYR61', 'score': 10.16}, {'connected_gene': 'LOC646626', 'score': 7.32}, {'connected_gene': 'BCL10', 'score': 0.39}, {'connected_gene': 'GC01P085392', 'score': 0.15}]
chr1	GH01I085575	85575118	85586483	2.55	[{'connected_gene': 'DDAH1', 'score': 550.77}, {'connected_gene': 'CYR61', 'score': 550.77}, {'connected_gene': 'ODF2L', 'score': 27.9}, {'connected_gene': 'ZNHIT6', 'score': 24.68}, {'connected_gene': 'C1orf52', 'score': 11.52}, {'connected_gene': 'BCL10', 'score': 9.8}, {'connected_gene': 'ENSG00000282057', 'score': 0.77}, {'connected_gene': 'ENSG00000272691', 'score': 0.77}, {'connected_gene': 'GC01P085583', 'score': 0.77}]
chr1	GH01I085550	85550280	85552069	0.83	[{'connected_gene': 'DDAH1', 'score': 11.23}, {'connected_gene': 'CYR61', 'score': 11.23}, {'connected_gene': 'ZNHIT6', 'score': 4.34}, {'connected_gene': 'ENSG00000282057', 'score': 0.31}, {'connected_gene': 'ENSG00000273264', 'score': 0.18}]
chr1	GH01I085544	85544118	85545999	1.04	[{'connected_gene': 'DDAH1', 'score': 11.16}, {'connected_gene': 'CYR61', 'score': 11.14}, {'connected_gene': 'ZNHIT6', 'score': 5.33}, {'connected_gene': 'ENSG00000282057', 'score': 0.29}, {'connected_gene': 'ENSG00000273264', 'score': 0.18}]
chr1	GH01I085493	85493943	85498336	1.09	[{'connected_gene': 'DDAH1', 'score': 10.68}, {'connected_gene': 'CYR61', 'score': 10.68}, {'connected_gene': 'ZNHIT6', 'score': 4.3}, {'connected_gene': 'ENSG00000273264', 'score': 0.31}, {'connected_gene': 'ENSG00000282057', 'score': 0.18}]
chr1	GH01I085472	85472348	85475087	0.54	[{'connected_gene': 'DDAH1', 'score': 25.76}, {'connected_gene': 'CYR61', 'score': 10.79}, {'connected_gene': 'MCOLN2', 'score': 4.24}, {'connected_gene': 'ENSG00000273264', 'score': 0.44}, {'connected_gene': 'ENSG00000282057', 'score': 0.15}]
chr1	GH01I085501	85501798	85503547	1.21	[{'connected_gene': 'DDAH1', 'score': 11.2}, {'connected_gene': 'CYR61', 'score': 11.09}, {'connected_gene': 'ENSG00000273264', 'score': 0.28}, {'connected_gene': 'ENSG00000282057', 'score': 0.18}]
chr1	GH01I085528	85528215	85533089	0.56	[{'connected_gene': 'DDAH1', 'score': 10.57}, {'connected_gene': 'CYR61', 'score': 10.56}, {'connected_gene': 'ENSG00000282057', 'score': 0.25}, {'connected_gene': 'ENSG00000273264', 'score': 0.21}]
chr1	GH01I085505	85505110	85506937	0.2	[{'connected_gene': 'DDAH1', 'score': 10.21}, {'connected_gene': 'CYR61', 'score': 10.21}, {'connected_gene': 'ENSG00000273264', 'score': 0.28}, {'connected_gene': 'ENSG00000282057', 'score': 0.19}]
chr1	GH01I085503	85503701	85505066	0.52	[{'connected_gene': 'DDAH1', 'score': 9.91}, {'connected_gene': 'CYR61', 'score': 9.9}, {'connected_gene': 'ENSG00000273264', 'score': 0.28}, {'connected_gene': 'ENSG00000282057', 'score': 0.19}]
chr1	GH01I085625	85625866	85625875	0.22	[{'connected_gene': 'DDAH1', 'score': 10.48}, {'connected_gene': 'CYR61', 'score': 10.48}, {'connected_gene': 'GC01P085628', 'score': 0.77}, {'connected_gene': 'ENSG00000230285', 'score': 0.31}]
chr1	GH01I085450	85450480	85451890	0.38	[{'connected_gene': 'DDAH1', 'score': 11.12}, {'connected_gene': 'CYR61', 'score': 11.12}, {'connected_gene': 'GC01M085455', 'score': 0.44}, {'connected_gene': 'GC01M085436', 'score': 0.37}, {'connected_gene': 'ENSG00000199459', 'score': 0.37}]
chr1	GH01I085337	85337787	85345678	1.32	[{'connected_gene': 'DDAH1', 'score': 27.81}, {'connected_gene': 'C1orf52', 'score': 13.55}, {'connected_gene': 'CYR61', 'score': 10.42}, {'connected_gene': 'BCL10', 'score': 5.13}, {'connected_gene': 'GC01P085392', 'score': 0.23}, {'connected_gene': 'LOC646626', 'score': 0.2}]
chr1	GH01I085654	85654638	85654667	0.38	[{'connected_gene': 'PIR53460', 'score': 550.77}, {'connected_gene': 'CYR61', 'score': 10.53}, {'connected_gene': 'DDAH1', 'score': 10.52}, {'connected_gene': 'ENSG00000199934', 'score': 10.49}, {'connected_gene': 'ZNHIT6', 'score': 0.23}]
chr1	GH01I085627	85627382	85630908	1.28	[{'connected_gene': 'GC01P085628', 'score': 550.77}, {'connected_gene': 'ENSG00000199934', 'score': 11.91}, {'connected_gene': 'CYR61', 'score': 11.43}, {'connected_gene': 'DDAH1', 'score': 11.42}, {'connected_gene': 'ZNHIT6', 'score': 8.87}, {'connected_gene': 'PIR53460', 'score': 0.34}]
chr1	GH01I085622	85622113	85623866	0.88	[{'connected_gene': 'ENSG00000199934', 'score': 11.29}, {'connected_gene': 'DDAH1', 'score': 10.93}, {'connected_gene': 'CYR61', 'score': 10.93}, {'connected_gene': 'ZNHIT6', 'score': 8.7}, {'connected_gene': 'GC01P085628', 'score': 0.44}, {'connected_gene': 'ENSG00000230285', 'score': 0.34}]
chr1	GH01I085553	85553055	85554217	0.6	[{'connected_gene': 'ENSG00000199934', 'score': 11.79}, {'connected_gene': 'DDAH1', 'score': 11.3}, {'connected_gene': 'CYR61', 'score': 11.27}, {'connected_gene': 'ZNHIT6', 'score': 4.67}, {'connected_gene': 'ENSG00000282057', 'score': 0.34}, {'connected_gene': 'ENSG00000273264', 'score': 0.17}]
chr1	GH01I085554	85554365	85556888	0.89	[{'connected_gene': 'ENSG00000199934', 'score': 11.79}, {'connected_gene': 'DDAH1', 'score': 11.3}, {'connected_gene': 'CYR61', 'score': 11.27}, {'connected_gene': 'ENSG00000282057', 'score': 0.34}, {'connected_gene': 'ENSG00000273264', 'score': 0.17}]