PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000367360	[[150238013, 150238210], [150239309, 150239520], [150240178, 150240460], [150240688, 150240952], [150244061, 150244214]]	[[150238047, 150238210], [150239309, 150239520], [150240178, 150240460], [150240688, 150240952], [150244061, 150244146]]
ENST00000367361	[[150238048, 150238210], [150239309, 150239420], [150240178, 150240460], [150240688, 150240952], [150244061, 150244146]]	[[150239409, 150239420], [150240178, 150240460], [150240688, 150240952], [150244061, 150244146]]
ENST00000479265	[[150239842, 150240460], [150240688, 150240952], [150244061, 150244257]]	[[150240143, 150240460], [150240688, 150240952], [150244061, 150244146]]
NM_001001788	[[150238013, 150238210], [150239309, 150239520], [150240178, 150240460], [150240688, 150240952], [150244061, 150244288]]	[[150238047, 150238210], [150239309, 150239520], [150240178, 150240460], [150240688, 150240952], [150244061, 150244146]]
NR_130110	[[150238013, 150238210], [150239309, 150239420], [150240178, 150240460], [150240688, 150240952], [150244061, 150244288]]	None

Promoter

Chrom	Start	End	Description
chr6	150244213	150244262	CAGE_peak_1_at_RAET1G_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I149470	149470711	149475449	1.32	[{'connected_gene': 'LATS1', 'score': 31.04}, {'connected_gene': 'PPIL4', 'score': 24.07}, {'connected_gene': 'NUP43', 'score': 15.3}, {'connected_gene': 'RPS18P9', 'score': 13.6}, {'connected_gene': 'KATNA1', 'score': 10.67}, {'connected_gene': 'ENSG00000233330', 'score': 10.58}, {'connected_gene': 'ENSG00000231760', 'score': 7.38}, {'connected_gene': 'GINM1', 'score': 5.38}, {'connected_gene': 'RAET1G', 'score': 4.78}, {'connected_gene': 'ZC3H12D', 'score': 0.39}, {'connected_gene': 'SUMO4', 'score': 0.19}, {'connected_gene': 'GC06P149237', 'score': 0.07}]
chr6	GH06I149922	149922600	149923401	1.83	[{'connected_gene': 'RAET1G', 'score': 550.77}, {'connected_gene': 'RAET1E', 'score': 15.43}, {'connected_gene': 'LATS1', 'score': 11.72}, {'connected_gene': 'RAET1F', 'score': 0.39}]
chr6	GH06I150864	150864409	150868512	2.27	[{'connected_gene': 'MTHFD1L', 'score': 550.77}, {'connected_gene': 'AKAP12', 'score': 10.1}, {'connected_gene': 'ENSG00000216906', 'score': 10.03}, {'connected_gene': 'RAET1G', 'score': 4.47}, {'connected_gene': 'ARL4AP5', 'score': 0.2}]
chr6	GH06I150266	150266226	150274512	1.69	[{'connected_gene': 'LOC105378054', 'score': 550.77}, {'connected_gene': 'LATS1', 'score': 58.29}, {'connected_gene': 'NUP43', 'score': 48.07}, {'connected_gene': 'PPIL4', 'score': 36.89}, {'connected_gene': 'ENSG00000231760', 'score': 22.3}, {'connected_gene': 'KATNA1', 'score': 20.14}, {'connected_gene': 'RNU4-7P', 'score': 11.41}, {'connected_gene': 'ENSG00000238594', 'score': 10.55}, {'connected_gene': 'ENSG00000233330', 'score': 10.51}, {'connected_gene': 'PPP1R14C', 'score': 9.08}, {'connected_gene': 'RAET1G', 'score': 2.61}, {'connected_gene': 'GC06M150327', 'score': 0.22}, {'connected_gene': 'GC06M150158', 'score': 0.16}]
chr6	GH06I149934	149934285	149934454	0.89	[{'connected_gene': 'LOC105378052', 'score': 550.77}, {'connected_gene': 'LATS1', 'score': 21.23}, {'connected_gene': 'RPS18P9', 'score': 10.01}, {'connected_gene': 'RAET1G', 'score': 0.39}]
chr6	GH06I150250	150250413	150258403	1.64	[{'connected_gene': 'ENSG00000268592', 'score': 15.94}, {'connected_gene': 'NUP43', 'score': 15.55}, {'connected_gene': 'ENSG00000216906', 'score': 15.04}, {'connected_gene': 'PPIL4', 'score': 13.33}, {'connected_gene': 'ENSG00000231760', 'score': 12.72}, {'connected_gene': 'KATNA1', 'score': 11.45}, {'connected_gene': 'LRP11', 'score': 11.34}, {'connected_gene': 'LATS1', 'score': 11.33}, {'connected_gene': 'ENSG00000238594', 'score': 11.3}, {'connected_gene': 'PPP1R14C', 'score': 10.82}, {'connected_gene': 'RAET1G', 'score': 3.97}, {'connected_gene': 'ULBP2', 'score': 1.63}, {'connected_gene': 'RAET1L', 'score': 1.25}, {'connected_gene': 'LOC105378054', 'score': 0.37}, {'connected_gene': 'GC06M150158', 'score': 0.14}]
chr6	GH06I149925	149925200	149926914	1.2	[{'connected_gene': 'ENSG00000231760', 'score': 15.63}, {'connected_gene': 'ENSG00000216906', 'score': 6.68}, {'connected_gene': 'RAET1E', 'score': 5.87}, {'connected_gene': 'RAET1G', 'score': 0.77}, {'connected_gene': 'LOC105378052', 'score': 0.44}]