PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000408996	[[114914338, 114916894], [114952014, 114952142], [114956131, 114956377], [114961297, 114961876]]	[[114916245, 114916894], [114952014, 114952142], [114956131, 114956377], [114961297, 114961489]]
ENST00000427199	[[114914346, 114917012], [114937793, 114938176]]	[[114916245, 114916953]]
ENST00000513729	[[114917426, 114917621], [114937793, 114937886]]	None
NM_021649	[[114914192, 114917012], [114937793, 114938176]]	[[114916245, 114916953]]

Promoter

Chrom	Start	End	Description
chr5	114938090	114938226	CAGE_peak_1_at_TICAM2_5end,CAGE_peak_2_at_TMED7-TICAM2_5end
chr5	114961864	114961875	CAGE_peak_2_at_TICAM2_5end,CAGE_peak_4_at_TMED7_5end,CAGE_peak_5_at_TMED7-TICAM2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr5	GH05I115582	115582892	115584234	0.52	[{'connected_gene': 'FEM1C', 'score': 11.86}, {'connected_gene': 'CCDC112', 'score': 11.24}, {'connected_gene': 'LOC101927100', 'score': 8.05}, {'connected_gene': 'TICAM2', 'score': 6.59}, {'connected_gene': 'TMED7', 'score': 4.8}, {'connected_gene': 'GC05P115578', 'score': 0.77}, {'connected_gene': 'TMED7-TICAM2', 'score': 0.26}]
chr5	GH05I115540	115540600	115545690	2.31	[{'connected_gene': 'FEM1C', 'score': 555.82}, {'connected_gene': 'SEMA6A-AS1', 'score': 37.15}, {'connected_gene': 'ENSG00000250015', 'score': 34.41}, {'connected_gene': 'ATG12', 'score': 19.19}, {'connected_gene': 'LOC101927100', 'score': 17.28}, {'connected_gene': 'TICAM2', 'score': 16.74}, {'connected_gene': 'PGGT1B', 'score': 10.69}, {'connected_gene': 'TMED7-TICAM2', 'score': 10.51}, {'connected_gene': 'TMED7', 'score': 6.14}, {'connected_gene': 'CCT5P1', 'score': 0.29}]
chr5	GH05I115242	115242529	115244090	0.52	[{'connected_gene': 'TRIM36', 'score': 10.43}, {'connected_gene': 'TICAM2', 'score': 9.18}, {'connected_gene': 'LOC101927100', 'score': 9.18}, {'connected_gene': 'TMED7-TICAM2', 'score': 9.17}, {'connected_gene': 'ENSG00000271797', 'score': 0.37}, {'connected_gene': 'PGGT1B', 'score': 0.37}, {'connected_gene': 'GC05M115205', 'score': 0.28}]
chr5	GH05I115507	115507100	115508740	0.2	[{'connected_gene': 'TMED7', 'score': 10.08}, {'connected_gene': 'TMED7-TICAM2', 'score': 10.08}, {'connected_gene': 'TICAM2', 'score': 10.0}, {'connected_gene': 'LOC101927100', 'score': 10.0}, {'connected_gene': 'CCT5P1', 'score': 0.77}, {'connected_gene': 'ENSG00000249433', 'score': 0.39}]
chr5	GH05I115511	115511899	115512238	0.33	[{'connected_gene': 'CCT5P1', 'score': 550.77}, {'connected_gene': 'TICAM2', 'score': 6.83}, {'connected_gene': 'FEM1C', 'score': 6.56}, {'connected_gene': 'ENSG00000249433', 'score': 0.37}]
chr5	GH05I115459	115459108	115463061	1.23	[{'connected_gene': 'TICAM2', 'score': 21.15}, {'connected_gene': 'FEM1C', 'score': 19.74}, {'connected_gene': 'PGGT1B', 'score': 2.27}, {'connected_gene': 'GC05M115471', 'score': 0.34}, {'connected_gene': 'AK3P4', 'score': 0.22}]
chr5	GH05I115418	115418061	115420684	1.12	[{'connected_gene': 'TICAM2', 'score': 15.24}, {'connected_gene': 'FEM1C', 'score': 13.46}, {'connected_gene': 'PGGT1B', 'score': 1.53}, {'connected_gene': 'AK3P4', 'score': 0.37}, {'connected_gene': 'GC05M115471', 'score': 0.2}]
chr5	GH05I115556	115556990	115560920	0.9	[{'connected_gene': 'TICAM2', 'score': 18.48}, {'connected_gene': 'LOC101927100', 'score': 17.45}, {'connected_gene': 'TMED7', 'score': 16.32}, {'connected_gene': 'TMED7-TICAM2', 'score': 10.89}, {'connected_gene': 'SEMA6A-AS1', 'score': 10.78}, {'connected_gene': 'FEM1C', 'score': 6.79}, {'connected_gene': 'GC05P115575', 'score': 0.37}]
chr5	GH05I115601	115601173	115603975	1.88	[{'connected_gene': 'TICAM2', 'score': 559.49}, {'connected_gene': 'LOC101927100', 'score': 559.12}, {'connected_gene': 'ENSG00000250015', 'score': 11.92}, {'connected_gene': 'SEMA6A-AS1', 'score': 10.5}, {'connected_gene': 'TMED7-TICAM2', 'score': 0.34}]
chr5	GH05I115538	115538801	115539400	0.2	[{'connected_gene': 'TICAM2', 'score': 10.38}, {'connected_gene': 'LOC101927100', 'score': 10.38}, {'connected_gene': 'TMED7-TICAM2', 'score': 10.33}, {'connected_gene': 'FEM1C', 'score': 0.44}, {'connected_gene': 'CCT5P1', 'score': 0.31}]
chr5	GH05I115539	115539601	115539800	0.2	[{'connected_gene': 'TICAM2', 'score': 10.38}, {'connected_gene': 'LOC101927100', 'score': 10.38}, {'connected_gene': 'TMED7-TICAM2', 'score': 10.33}, {'connected_gene': 'FEM1C', 'score': 0.44}, {'connected_gene': 'CCT5P1', 'score': 0.31}]
chr5	GH05I115537	115537401	115537600	0.2	[{'connected_gene': 'TICAM2', 'score': 10.38}, {'connected_gene': 'LOC101927100', 'score': 10.38}, {'connected_gene': 'TMED7-TICAM2', 'score': 10.33}, {'connected_gene': 'TMED7', 'score': 5.76}, {'connected_gene': 'FEM1C', 'score': 0.44}, {'connected_gene': 'CCT5P1', 'score': 0.31}]
chr5	GH05I115549	115549244	115549433	0.68	[{'connected_gene': 'CCDC112', 'score': 11.72}, {'connected_gene': 'TICAM2', 'score': 11.3}, {'connected_gene': 'LOC101927100', 'score': 11.3}, {'connected_gene': 'TMED7-TICAM2', 'score': 11.25}, {'connected_gene': 'TMED7', 'score': 11.13}, {'connected_gene': 'AP3S1', 'score': 10.16}, {'connected_gene': 'ATG12', 'score': 10.16}, {'connected_gene': 'FEM1C', 'score': 0.77}, {'connected_gene': 'GC05P115575', 'score': 0.31}]
chr5	GH05I115551	115551004	115551943	0.62	[{'connected_gene': 'CCDC112', 'score': 11.72}, {'connected_gene': 'TICAM2', 'score': 11.3}, {'connected_gene': 'LOC101927100', 'score': 11.3}, {'connected_gene': 'TMED7-TICAM2', 'score': 11.26}, {'connected_gene': 'TMED7', 'score': 11.13}, {'connected_gene': 'AP3S1', 'score': 10.16}, {'connected_gene': 'ATG12', 'score': 10.16}, {'connected_gene': 'FEM1C', 'score': 0.44}, {'connected_gene': 'GC05P115575', 'score': 0.34}]
chr5	GH05I115288	115288801	115289200	0.2	[{'connected_gene': 'HMGN1P15', 'score': 550.77}, {'connected_gene': 'RPS2P26', 'score': 11.86}, {'connected_gene': 'PGGT1B', 'score': 11.83}, {'connected_gene': 'TICAM2', 'score': 10.37}, {'connected_gene': 'LOC101927100', 'score': 10.37}, {'connected_gene': 'TMED7-TICAM2', 'score': 10.36}, {'connected_gene': 'CCDC112', 'score': 0.44}]
chr5	GH05I115623	115623046	115627266	2.3	[{'connected_gene': 'TMED7-TICAM2', 'score': 550.77}, {'connected_gene': 'TICAM2', 'score': 10.26}, {'connected_gene': 'LOC101927100', 'score': 7.28}, {'connected_gene': 'TMED7', 'score': 5.15}, {'connected_gene': 'COMMD10', 'score': 1.28}]
chr5	GH05I115579	115579344	115579493	0.31	[{'connected_gene': 'GC05P115579', 'score': 550.77}, {'connected_gene': 'GC05P115578', 'score': 550.77}, {'connected_gene': 'FEM1C', 'score': 11.89}, {'connected_gene': 'TICAM2', 'score': 11.68}, {'connected_gene': 'LOC101927100', 'score': 11.68}, {'connected_gene': 'TMED7-TICAM2', 'score': 11.59}, {'connected_gene': 'CCDC112', 'score': 11.59}, {'connected_gene': 'TMED7', 'score': 10.91}]
chr5	GH05I115575	115575192	115576827	0.49	[{'connected_gene': 'GC05P115575', 'score': 550.77}, {'connected_gene': 'TICAM2', 'score': 20.12}, {'connected_gene': 'LOC101927100', 'score': 19.32}, {'connected_gene': 'FEM1C', 'score': 11.89}, {'connected_gene': 'CCDC112', 'score': 11.59}, {'connected_gene': 'TMED7-TICAM2', 'score': 11.58}, {'connected_gene': 'TMED7', 'score': 10.9}, {'connected_gene': 'GC05P115579', 'score': 0.77}]
chr5	GH05I115484	115484201	115485200	0.46	[{'connected_gene': 'GC05M115471', 'score': 550.77}, {'connected_gene': 'TICAM2', 'score': 10.66}, {'connected_gene': 'LOC101927100', 'score': 10.66}, {'connected_gene': 'TMED7-TICAM2', 'score': 10.64}, {'connected_gene': 'AK3P4', 'score': 0.18}]
chr5	GH05I115574	115574724	115574813	0.59	[{'connected_gene': 'GC05P115575', 'score': 550.77}, {'connected_gene': 'LOC101927100', 'score': 17.93}, {'connected_gene': 'FEM1C', 'score': 11.91}, {'connected_gene': 'TICAM2', 'score': 11.66}, {'connected_gene': 'CCDC112', 'score': 11.59}, {'connected_gene': 'TMED7-TICAM2', 'score': 11.58}, {'connected_gene': 'TMED7', 'score': 10.9}]