PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000340030	[[172628153, 172628689], [172633473, 172633530], [172634761, 172636014]]	[[172628341, 172628689], [172633473, 172633509]]
ENST00000367721	[[172628157, 172628689], [172629234, 172629280], [172633473, 172633530], [172634761, 172636014]]	[[172628341, 172628689], [172629234, 172629280], [172633473, 172633530], [172634761, 172635156]]
NM_001302746	[[172628147, 172628689], [172633473, 172633530], [172634761, 172636013]]	[[172628341, 172628689], [172633473, 172633509]]
NM_000639	[[172628147, 172628689], [172629234, 172629280], [172633473, 172633530], [172634761, 172636013]]	[[172628341, 172628689], [172629234, 172629280], [172633473, 172633530], [172634761, 172635156]]

Promoter

Chrom	Start	End	Description
chr1	172628236	172628251	CAGE_peak_1_at_FASLG_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I172717	172717330	172720130	1.16	[{'connected_gene': 'PIGC', 'score': 25.35}, {'connected_gene': 'ENSG00000224228', 'score': 19.16}, {'connected_gene': 'METTL13', 'score': 16.74}, {'connected_gene': 'RNU6-693P', 'score': 12.17}, {'connected_gene': 'FASLG', 'score': 10.95}, {'connected_gene': 'SUCO', 'score': 9.85}, {'connected_gene': 'C1orf105', 'score': 9.82}, {'connected_gene': 'SLC25A38P1', 'score': 0.31}]
chr1	GH01I172495	172495344	172496374	0.65	[{'connected_gene': 'SUCO', 'score': 15.24}, {'connected_gene': 'PIGC', 'score': 10.35}, {'connected_gene': 'C1orf105', 'score': 10.3}, {'connected_gene': 'FASLG', 'score': 6.2}, {'connected_gene': 'LOC102724528', 'score': 0.28}]
chr1	GH01I172673	172673647	172676669	0.72	[{'connected_gene': 'SUCO', 'score': 5.79}, {'connected_gene': 'FASLG', 'score': 0.37}, {'connected_gene': 'SLC25A38P1', 'score': 0.19}]
chr1	GH01I172669	172669970	172671931	0.99	[{'connected_gene': 'SUCO', 'score': 1.44}, {'connected_gene': 'FASLG', 'score': 0.39}, {'connected_gene': 'SLC25A38P1', 'score': 0.18}]
chr1	GH01I172643	172643401	172644000	1.17	[{'connected_gene': 'SUCO', 'score': 8.56}, {'connected_gene': 'FASLG', 'score': 0.37}, {'connected_gene': 'RNU6-693P', 'score': 0.29}]
chr1	GH01I172625	172625401	172625800	0.2	[{'connected_gene': 'SUCO', 'score': 11.91}, {'connected_gene': 'FASLG', 'score': 11.5}, {'connected_gene': 'RNU6-693P', 'score': 0.39}]
chr1	GH01I172647	172647073	172647810	0.51	[{'connected_gene': 'SUCO', 'score': 10.54}, {'connected_gene': 'FASLG', 'score': 0.39}, {'connected_gene': 'RNU6-693P', 'score': 0.29}]
chr1	GH01I172616	172616401	172616800	0.2	[{'connected_gene': 'SUCO', 'score': 12.35}, {'connected_gene': 'RNU6-693P', 'score': 0.77}, {'connected_gene': 'FASLG', 'score': 0.26}]
chr1	GH01I172728	172728121	172728270	0.75	[{'connected_gene': 'SLC25A38P1', 'score': 0.34}, {'connected_gene': 'FASLG', 'score': 0.2}]
chr1	GH01I172892	172892612	172899926	1.44	[{'connected_gene': 'FASLG', 'score': 14.93}, {'connected_gene': 'TNFSF4', 'score': 11.74}, {'connected_gene': 'ENSG00000224228', 'score': 8.04}, {'connected_gene': 'SUCO', 'score': 3.46}, {'connected_gene': 'ENSG00000224000', 'score': 0.39}, {'connected_gene': 'AIMP1P2', 'score': 0.39}]
chr1	GH01I172662	172662249	172664490	1.53	[{'connected_gene': 'FASLG', 'score': 23.3}, {'connected_gene': 'SUCO', 'score': 13.67}, {'connected_gene': 'METTL13', 'score': 10.79}, {'connected_gene': 'SLC25A38P1', 'score': 0.18}]
chr1	GH01I172703	172703580	172704803	0.79	[{'connected_gene': 'FASLG', 'score': 25.55}, {'connected_gene': 'SUCO', 'score': 3.39}, {'connected_gene': 'SLC25A38P1', 'score': 0.26}]
chr1	GH01I172696	172696354	172701743	1.28	[{'connected_gene': 'FASLG', 'score': 8.57}, {'connected_gene': 'SUCO', 'score': 5.0}, {'connected_gene': 'SLC25A38P1', 'score': 0.25}]
chr1	GH01I172658	172658686	172661738	1.62	[{'connected_gene': 'FASLG', 'score': 550.77}, {'connected_gene': 'SUCO', 'score': 7.22}, {'connected_gene': 'SLC25A38P1', 'score': 0.17}]
chr1	GH01I172629	172629394	172630458	0.49	[{'connected_gene': 'FASLG', 'score': 11.52}, {'connected_gene': 'SUCO', 'score': 7.7}, {'connected_gene': 'RNU6-693P', 'score': 0.37}]
chr1	GH01I172725	172725081	172725090	0.52	[{'connected_gene': 'FASLG', 'score': 10.52}, {'connected_gene': 'ENSG00000224228', 'score': 9.6}, {'connected_gene': 'SLC25A38P1', 'score': 0.34}]
chr1	GH01I172672	172672185	172673050	0.58	[{'connected_gene': 'FASLG', 'score': 0.39}, {'connected_gene': 'SLC25A38P1', 'score': 0.18}]
chr1	GH01I172320	172320432	172327171	1.33	[{'connected_gene': 'FASLG', 'score': 4.78}, {'connected_gene': 'ENSG00000226375', 'score': 4.72}, {'connected_gene': 'GC01P172366', 'score': 0.26}, {'connected_gene': 'PIR59615', 'score': 0.18}, {'connected_gene': 'DNM3', 'score': 0.04}]
chr1	GH01I172173	172173498	172173508	0.23	[{'connected_gene': 'DNM3', 'score': 1.29}, {'connected_gene': 'FASLG', 'score': 1.26}, {'connected_gene': 'GC01P172160', 'score': 0.39}, {'connected_gene': 'GC01P172209', 'score': 0.28}]
chr1	GH01I172637	172637171	172640858	1.44	[{'connected_gene': 'RNU6-693P', 'score': 12.89}, {'connected_gene': 'SUCO', 'score': 11.13}, {'connected_gene': 'FASLG', 'score': 6.37}]
chr1	GH01I172654	172654179	172655383	0.63	[{'connected_gene': 'RNU6-693P', 'score': 11.37}, {'connected_gene': 'SUCO', 'score': 10.9}, {'connected_gene': 'FASLG', 'score': 0.77}]
chr1	GH01I172681	172681918	172683371	0.4	[{'connected_gene': 'RNU6-693P', 'score': 11.67}, {'connected_gene': 'FASLG', 'score': 11.4}, {'connected_gene': 'C1orf105', 'score': 9.51}, {'connected_gene': 'SLC25A38P1', 'score': 0.2}]
chr1	GH01I172715	172715789	172717096	0.57	[{'connected_gene': 'RNU6-693P', 'score': 12.17}, {'connected_gene': 'FASLG', 'score': 10.95}, {'connected_gene': 'SUCO', 'score': 9.85}, {'connected_gene': 'PIGC', 'score': 9.82}, {'connected_gene': 'C1orf105', 'score': 9.82}, {'connected_gene': 'SLC25A38P1', 'score': 0.29}]
chr1	GH01I172239	172239550	172240367	0.2	[{'connected_gene': 'RNU6-157P', 'score': 10.55}, {'connected_gene': 'ENSG00000226375', 'score': 4.5}, {'connected_gene': 'FASLG', 'score': 4.28}, {'connected_gene': 'PIR59615', 'score': 0.44}, {'connected_gene': 'GC01P172216', 'score': 0.34}, {'connected_gene': 'DNM3', 'score': 0.05}]
chr1	GH01I172708	172708295	172709106	0.58	[{'connected_gene': 'ENSG00000224228', 'score': 4.53}, {'connected_gene': 'SLC25A38P1', 'score': 0.28}, {'connected_gene': 'FASLG', 'score': 0.25}]
chr1	GH01I172744	172744764	172747433	1.48	[{'connected_gene': 'ENSG00000224228', 'score': 6.35}, {'connected_gene': 'SLC25A38P1', 'score': 0.77}, {'connected_gene': 'FASLG', 'score': 0.17}]