PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr3	3151667	3151684	CAGE_peak_1_at_IL5RA_5end
chr3	3151837	3151844	CAGE_peak_10_at_IL5RA_5end
chr3	3151845	3151872	CAGE_peak_3_at_IL5RA_5end
chr3	3151873	3151884	CAGE_peak_7_at_IL5RA_5end
chr3	3151947	3151970	CAGE_peak_5_at_IL5RA_5end
chr3	3152043	3152064	CAGE_peak_4_at_IL5RA_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I003145	3145492	3148924	0.43	[{'connected_gene': 'TRNT1', 'score': 34.54}, {'connected_gene': 'CRBN', 'score': 31.51}, {'connected_gene': 'IL5RA', 'score': 12.89}, {'connected_gene': 'ENSG00000253049', 'score': 11.14}, {'connected_gene': 'ENSG00000271870', 'score': 5.21}, {'connected_gene': 'GC03P003130', 'score': 0.37}]
chr3	GH03I003170	3170465	3176616	0.99	[{'connected_gene': 'TRNT1', 'score': 29.6}, {'connected_gene': 'CRBN', 'score': 21.02}, {'connected_gene': 'IL5RA', 'score': 12.18}, {'connected_gene': 'ENSG00000271870', 'score': 0.34}]
chr3	GH03I003191	3191224	3192964	1.26	[{'connected_gene': 'TRNT1', 'score': 11.33}, {'connected_gene': 'IL5RA', 'score': 11.05}, {'connected_gene': 'CRBN', 'score': 3.85}, {'connected_gene': 'GC03M003375', 'score': 0.09}]
chr3	GH03I003125	3125802	3128844	2.27	[{'connected_gene': 'TRNT1', 'score': 556.02}, {'connected_gene': 'IL5RA', 'score': 550.77}, {'connected_gene': 'CRBN', 'score': 21.59}, {'connected_gene': 'GC03P003130', 'score': 0.77}]
chr3	GH03I003109	3109110	3111194	1.47	[{'connected_gene': 'IL5RA', 'score': 550.37}, {'connected_gene': 'CNTN4-AS1', 'score': 10.97}, {'connected_gene': 'ENSG00000253049', 'score': 0.44}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000446632	[[3111232, 3111995], [3116465, 3116550], [3118214, 3118311], [3133907, 3134046], [3136982, 3137128], [3139553, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146671], [3150233, 3150375], [3151628, 3152058]]	[[3111908, 3111995], [3116465, 3116550], [3118214, 3118311], [3133907, 3134046], [3136982, 3137128], [3139553, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146668]]
ENST00000438560	[[3111409, 3111995], [3118214, 3118311], [3133907, 3134046], [3136982, 3137128], [3139553, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146671], [3150233, 3150375], [3151628, 3152058]]	[[3111949, 3111995], [3118214, 3118311], [3133907, 3134046], [3136982, 3137128], [3139553, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146668]]
ENST00000256452	[[3111420, 3111995], [3116465, 3116550], [3118214, 3118311], [3133907, 3134046], [3136982, 3137128], [3139553, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146671], [3147151, 3147220], [3150233, 3150375], [3151628, 3151664]]	[[3111908, 3111995], [3116465, 3116550], [3118214, 3118311], [3133907, 3134046], [3136982, 3137128], [3139553, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146668]]
ENST00000418488	[[3111908, 3111995], [3116465, 3116550], [3118214, 3118311], [3139553, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146668]]	[[3111908, 3111995], [3116465, 3116550], [3118214, 3118311], [3139553, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146668]]
ENST00000445864	[[3111908, 3111995], [3116465, 3116550], [3118214, 3118311], [3143375, 3143514], [3144358, 3144504], [3146586, 3146668]]	[[3111908, 3111995], [3116465, 3116550], [3118214, 3118311], [3143375, 3143514], [3144358, 3144504], [3146586, 3146668]]
ENST00000383846	[[3131654, 3131940], [3133907, 3134046], [3136982, 3137128], [3139553, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146671], [3150233, 3150375], [3151628, 3152031]]	[[3131926, 3131940], [3133907, 3134046], [3136982, 3137128], [3139553, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146668]]
ENST00000311981	[[3131856, 3131940], [3133907, 3134046], [3136982, 3137128], [3139553, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146671], [3147151, 3147220], [3150233, 3150375], [3151628, 3151664]]	[[3131926, 3131940], [3133907, 3134046], [3136982, 3137128], [3139553, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146668]]
ENST00000430514	[[3133487, 3134046], [3136982, 3137128], [3139553, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146671], [3147151, 3147220], [3150233, 3150375], [3151628, 3151664]]	[[3133899, 3134046], [3136982, 3137128], [3139553, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146668]]
ENST00000456302	[[3133696, 3134046], [3136982, 3137128], [3139553, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146671], [3150233, 3150375], [3151628, 3151667]]	[[3133899, 3134046], [3136982, 3137128], [3139553, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146668]]
ENST00000445701	[[3139673, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146671], [3150233, 3150375], [3168243, 3168297]]	[[3139673, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146668]]
ENST00000427088	[[3143415, 3143514], [3144358, 3144504], [3146586, 3146671], [3150233, 3150375], [3151683, 3152050]]	[[3143415, 3143514], [3144358, 3144504], [3146586, 3146668]]
ENST00000466722	[[3150267, 3150375], [3151594, 3152049]]	None
NM_000564	[[3108007, 3111995], [3116465, 3116550], [3118214, 3118311], [3133907, 3134046], [3136982, 3137128], [3139553, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146671], [3147151, 3147220], [3150233, 3150375], [3151628, 3152058]]	[[3111908, 3111995], [3116465, 3116550], [3118214, 3118311], [3133907, 3134046], [3136982, 3137128], [3139553, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146668]]
NM_175726	[[3108007, 3111995], [3116465, 3116550], [3118214, 3118311], [3133907, 3134046], [3136982, 3137128], [3139553, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146671], [3150233, 3150375], [3151628, 3152058]]	[[3111908, 3111995], [3116465, 3116550], [3118214, 3118311], [3133907, 3134046], [3136982, 3137128], [3139553, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146668]]
NM_001243099	[[3108007, 3111995], [3118214, 3118311], [3133907, 3134046], [3136982, 3137128], [3139553, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146671], [3150233, 3150375], [3151628, 3152058]]	[[3111949, 3111995], [3118214, 3118311], [3133907, 3134046], [3136982, 3137128], [3139553, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146668]]
NM_175725	[[3131856, 3131940], [3133907, 3134046], [3136982, 3137128], [3139553, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146671], [3147151, 3147220], [3150233, 3150375], [3151628, 3152058]]	[[3131926, 3131940], [3133907, 3134046], [3136982, 3137128], [3139553, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146668]]
NM_175728	[[3131856, 3131940], [3133907, 3134046], [3136982, 3137128], [3139553, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146671], [3150233, 3150375], [3151628, 3152058]]	[[3131926, 3131940], [3133907, 3134046], [3136982, 3137128], [3139553, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146668]]
NM_175724	[[3133493, 3134046], [3136982, 3137128], [3139553, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146671], [3147151, 3147220], [3150233, 3150375], [3151628, 3152058]]	[[3133899, 3134046], [3136982, 3137128], [3139553, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146668]]
NM_175727	[[3133493, 3134046], [3136982, 3137128], [3139553, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146671], [3150233, 3150375], [3151628, 3152058]]	[[3133899, 3134046], [3136982, 3137128], [3139553, 3139741], [3139820, 3139974], [3143375, 3143514], [3144358, 3144504], [3146586, 3146668]]