PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000340057	[[52051184, 52051256], [52052400, 52052603], [52053852, 52055436]]	[[52051229, 52051256], [52052400, 52052603], [52053852, 52054090]]
NM_002190	[[52051184, 52051256], [52052400, 52052603], [52053852, 52055436]]	[[52051229, 52051256], [52052400, 52052603], [52053852, 52054090]]

Promoter

Chrom	Start	End	Description
chr6	52051171	52051174	CAGE_peak_1_at_IL17A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I052216	52216812	52217901	0.49	[{'connected_gene': 'SLC25A20P1', 'score': 11.48}, {'connected_gene': 'IL17F', 'score': 11.48}, {'connected_gene': 'IL17A', 'score': 10.98}, {'connected_gene': 'MIR133B', 'score': 10.58}, {'connected_gene': 'LINCMD1', 'score': 10.58}, {'connected_gene': 'MIR206', 'score': 10.37}, {'connected_gene': 'PKHD1', 'score': 9.87}, {'connected_gene': 'LOC105375088', 'score': 0.37}, {'connected_gene': 'LOC102724327', 'score': 0.37}]
chr6	GH06I052263	52263843	52263992	0.73	[{'connected_gene': 'MIR133B', 'score': 10.36}, {'connected_gene': 'LINCMD1', 'score': 10.36}, {'connected_gene': 'PKHD1', 'score': 10.26}, {'connected_gene': 'MIR206', 'score': 10.1}, {'connected_gene': 'IL17A', 'score': 9.98}, {'connected_gene': 'SLC25A20P1', 'score': 0.37}, {'connected_gene': 'PIR36045', 'score': 0.37}]
chr6	GH06I052101	52101177	52104972	0.63	[{'connected_gene': 'MIR133B', 'score': 10.95}, {'connected_gene': 'LINCMD1', 'score': 10.95}, {'connected_gene': 'MIR206', 'score': 10.95}, {'connected_gene': 'IL17A', 'score': 10.17}, {'connected_gene': 'SLC25A20P1', 'score': 10.03}, {'connected_gene': 'IL17F', 'score': 10.03}, {'connected_gene': 'PKHD1', 'score': 0.37}, {'connected_gene': 'GC06P052124', 'score': 0.37}]
chr6	GH06I052186	52186326	52186385	0.7	[{'connected_gene': 'IL17A', 'score': 550.77}, {'connected_gene': 'GC06P052177', 'score': 0.44}]
chr6	GH06I052154	52154246	52158352	1.41	[{'connected_gene': 'GC06P052155', 'score': 550.77}, {'connected_gene': 'IL17F', 'score': 10.88}, {'connected_gene': 'SLC25A20P1', 'score': 10.87}, {'connected_gene': 'IL17A', 'score': 10.66}, {'connected_gene': 'PKHD1', 'score': 10.13}, {'connected_gene': 'MCM3', 'score': 9.96}, {'connected_gene': 'PAQR8', 'score': 9.68}, {'connected_gene': 'GC06M052169', 'score': 0.39}]