PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000338450	[[111365082, 111365324], [111371575, 111372522]]	[[111365320, 111365324], [111371575, 111372279]]
ENST00000333219	[[111365624, 111366632], [111371575, 111373421]]	[[111366496, 111366632], [111371575, 111372279]]
ENST00000375775	[[111365806, 111365933], [111371575, 111372522]]	[[111371646, 111372279]]
ENST00000375774	[[111367328, 111368355], [111371575, 111373418]]	[[111367790, 111368355], [111371575, 111372279]]
ENST00000464141	[[111367783, 111367875], [111371575, 111371823]]	None
NM_198217	[[111364969, 111365324], [111371575, 111373421]]	[[111365320, 111365324], [111371575, 111372279]]
NM_198218	[[111365609, 111365933], [111371575, 111373421]]	[[111371646, 111372279]]
NM_198219	[[111365609, 111366632], [111371575, 111373421]]	[[111366496, 111366632], [111371575, 111372279]]
NM_005537	[[111367358, 111368355], [111371575, 111373421]]	[[111367790, 111368355], [111371575, 111372279]]
NM_001267728	[[111367783, 111367875], [111371575, 111373421]]	[[111367790, 111367875], [111371575, 111372279]]

Promoter

Chrom	Start	End	Description
chr13	111365602	111365615	CAGE_peak_3_at_ING1_5end
chr13	111365988	111366070	CAGE_peak_1_at_ING1_5end
chr13	111368182	111368201	CAGE_peak_2_at_ING1_5end
chr13	111368228	111368238	CAGE_peak_4_at_ING1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I111188	111188890	111190174	1	[{'connected_gene': 'ARHGEF7', 'score': 7.2}, {'connected_gene': 'ING1', 'score': 2.85}, {'connected_gene': 'SALL4P4', 'score': 0.44}, {'connected_gene': 'GC13P111283', 'score': 0.16}]
chr13	GH13I111164	111164341	111169027	1.1	[{'connected_gene': 'ARHGEF7', 'score': 19.97}, {'connected_gene': 'ARHGEF7-AS2', 'score': 11.08}, {'connected_gene': 'CARS2', 'score': 4.86}, {'connected_gene': 'ING1', 'score': 3.07}, {'connected_gene': 'ANKRD10', 'score': 1.71}, {'connected_gene': 'LOC101060553', 'score': 0.39}, {'connected_gene': 'SALL4P4', 'score': 0.37}]
chr13	GH13I110657	110657291	110659000	1.09	[{'connected_gene': 'CARS2', 'score': 39.94}, {'connected_gene': 'NAXD', 'score': 33.79}, {'connected_gene': 'ING1', 'score': 11.96}, {'connected_gene': 'ANKRD10', 'score': 10.72}, {'connected_gene': 'COL4A2-AS2', 'score': 10.56}, {'connected_gene': 'COL4A2', 'score': 10.53}, {'connected_gene': 'GC13P110640', 'score': 0.37}, {'connected_gene': 'GC13P110711', 'score': 0.23}, {'connected_gene': 'GC13P110574', 'score': 0.18}]
chr13	GH13I110650	110650403	110654774	0.38	[{'connected_gene': 'CARS2', 'score': 39.99}, {'connected_gene': 'NAXD', 'score': 32.89}, {'connected_gene': 'ING1', 'score': 11.8}, {'connected_gene': 'ANKRD10', 'score': 10.36}, {'connected_gene': 'GC13P110640', 'score': 0.39}, {'connected_gene': 'GC13P110711', 'score': 0.22}, {'connected_gene': 'GC13P110574', 'score': 0.18}]
chr13	GH13I110644	110644454	110645267	0.88	[{'connected_gene': 'CARS2', 'score': 36.4}, {'connected_gene': 'NAXD', 'score': 20.84}, {'connected_gene': 'ING1', 'score': 11.54}, {'connected_gene': 'ANKRD10', 'score': 10.65}, {'connected_gene': 'GC13P110640', 'score': 0.44}, {'connected_gene': 'GC13P110711', 'score': 0.2}, {'connected_gene': 'GC13P110574', 'score': 0.19}]
chr13	GH13I110798	110798136	110800869	0.76	[{'connected_gene': 'CARS2', 'score': 11.0}, {'connected_gene': 'ING1', 'score': 11.0}, {'connected_gene': 'NAXD', 'score': 10.34}, {'connected_gene': 'LINC00431', 'score': 5.77}, {'connected_gene': 'LINC00567', 'score': 0.39}, {'connected_gene': 'RPL21P107', 'score': 0.28}]
chr13	GH13I110675	110675638	110677595	1.12	[{'connected_gene': 'CARS2', 'score': 30.78}, {'connected_gene': 'ING1', 'score': 11.76}, {'connected_gene': 'NAXD', 'score': 9.65}, {'connected_gene': 'GC13P110711', 'score': 0.28}, {'connected_gene': 'GC13P110640', 'score': 0.28}, {'connected_gene': 'GC13P110574', 'score': 0.15}]
chr13	GH13I110755	110755994	110756776	0.6	[{'connected_gene': 'CARS2', 'score': 11.36}, {'connected_gene': 'ING1', 'score': 11.36}, {'connected_gene': 'GC13M110763', 'score': 0.44}, {'connected_gene': 'PIR46428', 'score': 0.26}]
chr13	GH13I110723	110723110	110723384	0.2	[{'connected_gene': 'CARS2', 'score': 14.41}, {'connected_gene': 'PIR46428', 'score': 0.44}, {'connected_gene': 'ING1', 'score': 0.39}, {'connected_gene': 'GC13M110763', 'score': 0.28}]
chr13	GH13I110717	110717730	110718388	0.62	[{'connected_gene': 'CARS2', 'score': 8.59}, {'connected_gene': 'PIR46428', 'score': 0.77}, {'connected_gene': 'ING1', 'score': 0.44}, {'connected_gene': 'GC13M110763', 'score': 0.25}]
chr13	GH13I110710	110710963	110717401	2.31	[{'connected_gene': 'CARS2', 'score': 587.67}, {'connected_gene': 'PIR46428', 'score': 550.77}, {'connected_gene': 'LOC105376684', 'score': 550.77}, {'connected_gene': 'ING1', 'score': 550.77}, {'connected_gene': 'ANKRD10-IT1', 'score': 20.0}, {'connected_gene': 'NAXD', 'score': 10.73}, {'connected_gene': 'ANKRD10', 'score': 10.6}, {'connected_gene': 'GC13P110711', 'score': 0.77}]
chr13	GH13I110688	110688806	110689795	0.31	[{'connected_gene': 'NAXD', 'score': 13.8}, {'connected_gene': 'CARS2', 'score': 13.02}, {'connected_gene': 'ING1', 'score': 13.02}, {'connected_gene': 'ANKRD10', 'score': 10.87}, {'connected_gene': 'GC13P110711', 'score': 0.34}, {'connected_gene': 'GC13P110640', 'score': 0.23}, {'connected_gene': 'GC13P110574', 'score': 0.14}]
chr13	GH13I110660	110660560	110660739	0.22	[{'connected_gene': 'NAXD', 'score': 18.74}, {'connected_gene': 'CARS2', 'score': 11.96}, {'connected_gene': 'ING1', 'score': 11.96}, {'connected_gene': 'COL4A2-AS2', 'score': 10.56}, {'connected_gene': 'COL4A2', 'score': 10.53}, {'connected_gene': 'ANKRD10', 'score': 9.86}, {'connected_gene': 'GC13P110640', 'score': 0.34}, {'connected_gene': 'GC13P110711', 'score': 0.23}, {'connected_gene': 'GC13P110574', 'score': 0.17}]
chr13	GH13I110571	110571629	110572455	0.2	[{'connected_gene': 'NAXD', 'score': 10.61}, {'connected_gene': 'ANKRD10', 'score': 9.58}, {'connected_gene': 'ING1', 'score': 5.11}, {'connected_gene': 'GC13P110574', 'score': 0.77}, {'connected_gene': 'RAB20', 'score': 0.39}]
chr13	GH13I110953	110953479	110956603	1.64	[{'connected_gene': 'RAB20', 'score': 9.55}, {'connected_gene': 'ANKRD10', 'score': 3.48}, {'connected_gene': 'ING1', 'score': 1.89}, {'connected_gene': 'LINC00431', 'score': 0.39}, {'connected_gene': 'PARP1P1', 'score': 0.37}, {'connected_gene': 'LOC105370364', 'score': 0.37}]
chr13	GH13I110470	110470904	110472678	1.6	[{'connected_gene': 'RAB20', 'score': 13.35}, {'connected_gene': 'ANKRD10', 'score': 3.89}, {'connected_gene': 'ING1', 'score': 2.45}, {'connected_gene': 'COL4A2-AS2', 'score': 0.44}, {'connected_gene': 'COL4A2-AS1', 'score': 0.28}, {'connected_gene': 'COL4A2', 'score': 0.1}]
chr13	GH13I110519	110519516	110522908	1.44	[{'connected_gene': 'RAB20', 'score': 41.36}, {'connected_gene': 'COL4A2-AS2', 'score': 11.74}, {'connected_gene': 'COL4A2', 'score': 11.6}, {'connected_gene': 'NAXD', 'score': 9.84}, {'connected_gene': 'ANKRD10', 'score': 2.61}, {'connected_gene': 'ING1', 'score': 1.35}, {'connected_gene': 'GC13P110514', 'score': 0.44}]
chr13	GH13I110535	110535537	110539028	1.34	[{'connected_gene': 'RAB20', 'score': 70.5}, {'connected_gene': 'COL4A2-AS2', 'score': 11.41}, {'connected_gene': 'COL4A2', 'score': 11.29}, {'connected_gene': 'ANKRD10', 'score': 11.07}, {'connected_gene': 'NAXD', 'score': 9.82}, {'connected_gene': 'ING1', 'score': 1.21}, {'connected_gene': 'GC13P110514', 'score': 0.34}]
chr13	GH13I110523	110523858	110532400	1.56	[{'connected_gene': 'RAB20', 'score': 52.87}, {'connected_gene': 'COL4A2-AS2', 'score': 11.73}, {'connected_gene': 'COL4A2', 'score': 11.6}, {'connected_gene': 'ANKRD10', 'score': 11.42}, {'connected_gene': 'NAXD', 'score': 10.22}, {'connected_gene': 'ING1', 'score': 1.71}, {'connected_gene': 'GC13P110514', 'score': 0.39}]
chr13	GH13I110558	110558890	110563808	2.41	[{'connected_gene': 'RAB20', 'score': 581.56}, {'connected_gene': 'COL4A2-AS2', 'score': 11.02}, {'connected_gene': 'COL4A2', 'score': 10.94}, {'connected_gene': 'ANKRD10', 'score': 2.62}, {'connected_gene': 'ING1', 'score': 1.66}, {'connected_gene': 'GC13P110514', 'score': 0.25}]
chr13	GH13I110873	110873791	110875463	1.36	[{'connected_gene': 'ANKRD10', 'score': 18.85}, {'connected_gene': 'CARS2', 'score': 9.98}, {'connected_gene': 'ING1', 'score': 9.98}, {'connected_gene': 'NAXD', 'score': 9.88}, {'connected_gene': 'RAB20', 'score': 7.44}, {'connected_gene': 'ANKRD10-IT1', 'score': 7.03}, {'connected_gene': 'LINC00346', 'score': 5.54}, {'connected_gene': 'GC13M110864', 'score': 0.77}, {'connected_gene': 'GC13P110892', 'score': 0.37}]
chr13	GH13I110876	110876714	110876863	0.38	[{'connected_gene': 'ANKRD10', 'score': 11.37}, {'connected_gene': 'CARS2', 'score': 9.98}, {'connected_gene': 'ING1', 'score': 9.98}, {'connected_gene': 'GC13M110864', 'score': 0.44}, {'connected_gene': 'GC13P110892', 'score': 0.37}]
chr13	GH13I110911	110911442	110917976	2.5	[{'connected_gene': 'ANKRD10', 'score': 563.16}, {'connected_gene': 'ENSG00000277767', 'score': 550.77}, {'connected_gene': 'ANKRD10-IT1', 'score': 12.11}, {'connected_gene': 'RAB20', 'score': 10.43}, {'connected_gene': 'NAXD', 'score': 4.62}, {'connected_gene': 'ING1', 'score': 2.38}, {'connected_gene': 'ARHGEF7', 'score': 1.25}]
chr13	GH13I110370	110370201	110375461	1.33	[{'connected_gene': 'COL4A1', 'score': 11.35}, {'connected_gene': 'COL4A2', 'score': 11.35}, {'connected_gene': 'ING1', 'score': 2.05}, {'connected_gene': 'GC13P110400', 'score': 0.31}, {'connected_gene': 'MIR8073', 'score': 0.29}]
chr13	GH13I110971	110971634	110971753	0.57	[{'connected_gene': 'LOC105370364', 'score': 550.77}, {'connected_gene': 'TEX29', 'score': 48.08}, {'connected_gene': 'ING1', 'score': 14.53}, {'connected_gene': 'LINC00431', 'score': 0.44}, {'connected_gene': 'GC13P110984', 'score': 0.39}]
chr13	GH13I110719	110719006	110719839	0.38	[{'connected_gene': 'ANKRD10-IT1', 'score': 11.39}, {'connected_gene': 'ANKRD10', 'score': 10.34}, {'connected_gene': 'PIR46428', 'score': 0.77}, {'connected_gene': 'ING1', 'score': 0.44}, {'connected_gene': 'GC13M110763', 'score': 0.26}]
chr13	GH13I110463	110463934	110464786	1.21	[{'connected_gene': 'COL4A2-AS2', 'score': 550.77}, {'connected_gene': 'RAB20', 'score': 9.28}, {'connected_gene': 'ANKRD10', 'score': 2.39}, {'connected_gene': 'ING1', 'score': 1.17}, {'connected_gene': 'COL4A2-AS1', 'score': 0.26}, {'connected_gene': 'COL4A2', 'score': 0.1}]
chr13	GH13I110640	110640555	110641792	0.76	[{'connected_gene': 'GC13P110640', 'score': 550.77}, {'connected_gene': 'NAXD', 'score': 40.06}, {'connected_gene': 'CARS2', 'score': 12.1}, {'connected_gene': 'ING1', 'score': 12.1}, {'connected_gene': 'ANKRD10', 'score': 10.65}, {'connected_gene': 'COL4A2-AS2', 'score': 10.59}, {'connected_gene': 'COL4A2', 'score': 10.54}, {'connected_gene': 'GC13P110574', 'score': 0.2}, {'connected_gene': 'GC13P110711', 'score': 0.19}]
chr13	GH13I110574	110574974	110577821	1.56	[{'connected_gene': 'GC13P110574', 'score': 550.77}, {'connected_gene': 'ANKRD10', 'score': 12.31}, {'connected_gene': 'NAXD', 'score': 11.33}, {'connected_gene': 'RAB20', 'score': 9.26}, {'connected_gene': 'ING1', 'score': 1.71}]
chr13	GH13I110891	110891686	110891829	0.33	[{'connected_gene': 'GC13P110892', 'score': 550.77}, {'connected_gene': 'ANKRD10', 'score': 12.67}, {'connected_gene': 'LINC00346', 'score': 11.66}, {'connected_gene': 'NAXD', 'score': 9.93}, {'connected_gene': 'ING1', 'score': 3.24}, {'connected_gene': 'GC13M110864', 'score': 0.34}]