PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr10	33200984	33201060	CAGE_peak_5_at_ITGB1_5end
chr10	33212555	33212600	CAGE_peak_9_at_ITGB1_5end
chr10	33212601	33212662	CAGE_peak_6_at_ITGB1_5end
chr10	33221467	33221474	CAGE_peak_12_at_ITGB1_5end
chr10	33221480	33221527	CAGE_peak_7_at_ITGB1_5end
chr10	33246815	33246830	CAGE_peak_4_at_ITGB1_5end
chr10	33246846	33246855	CAGE_peak_11_at_ITGB1_5end
chr10	33246856	33246867	CAGE_peak_8_at_ITGB1_5end
chr10	33246874	33246907	CAGE_peak_2_at_ITGB1_5end
chr10	33247124	33247207	CAGE_peak_1_at_ITGB1_5end
chr10	33247223	33247234	CAGE_peak_3_at_ITGB1_5end
chr10	33281363	33281383	CAGE_peak_14_at_ITGB1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I033270	33270614	33275343	1.67	[{'connected_gene': 'NRP1', 'score': 13.83}, {'connected_gene': 'ITGB1', 'score': 1.44}, {'connected_gene': 'GC10M033237', 'score': 0.44}, {'connected_gene': 'RN7SL398P', 'score': 0.37}]
chr10	GH10I033213	33213716	33219238	1.15	[{'connected_gene': 'NRP1', 'score': 9.81}, {'connected_gene': 'ITGB1', 'score': 5.26}, {'connected_gene': 'ENSG00000238258', 'score': 0.44}, {'connected_gene': 'GC10M033237', 'score': 0.25}]
chr10	GH10I032978	32978994	32987004	2.16	[{'connected_gene': 'EPC1', 'score': 32.47}, {'connected_gene': 'AK3P5', 'score': 13.79}, {'connected_gene': 'ENSG00000226842', 'score': 12.38}, {'connected_gene': 'CCDC7', 'score': 10.22}, {'connected_gene': 'LOC105376486', 'score': 8.04}, {'connected_gene': 'ITGB1', 'score': 1.76}, {'connected_gene': 'ITGB1-DT', 'score': 0.34}]
chr10	GH10I033030	33030758	33031507	0.31	[{'connected_gene': 'ITGB1', 'score': 11.7}, {'connected_gene': 'NRP1', 'score': 9.14}, {'connected_gene': 'RN7SL847P', 'score': 0.77}, {'connected_gene': 'MTND4LP11', 'score': 0.44}, {'connected_gene': 'ITGB1-DT', 'score': 0.19}]
chr10	GH10I032976	32976448	32976629	0.42	[{'connected_gene': 'ITGB1', 'score': 12.03}, {'connected_gene': 'CCDC7', 'score': 8.71}, {'connected_gene': 'ITGB1-DT', 'score': 0.37}]
chr10	GH10I032795	32795713	32795862	0.63	[{'connected_gene': 'ITGB1', 'score': 12.2}, {'connected_gene': 'GC10M032819', 'score': 0.31}, {'connected_gene': 'PIR43634', 'score': 0.19}, {'connected_gene': 'CCDC7', 'score': 0.05}]
chr10	GH10I033031	33031905	33033851	0.8	[{'connected_gene': 'ITGB1', 'score': 11.7}, {'connected_gene': 'LOC105376486', 'score': 10.3}, {'connected_gene': 'NRP1', 'score': 9.14}, {'connected_gene': 'RN7SL847P', 'score': 0.77}, {'connected_gene': 'MTND4LP11', 'score': 0.44}, {'connected_gene': 'ITGB1-DT', 'score': 0.19}]
chr10	GH10I032947	32947005	32964108	2.78	[{'connected_gene': 'ITGB1', 'score': 562.12}, {'connected_gene': 'LOC105376486', 'score': 22.87}, {'connected_gene': 'EPC1', 'score': 18.09}, {'connected_gene': 'AK3P5', 'score': 12.9}, {'connected_gene': 'ENSG00000226842', 'score': 12.78}, {'connected_gene': 'CCDC7', 'score': 9.39}, {'connected_gene': 'ITGB1-DT', 'score': 0.77}]
chr10	GH10I032997	32997473	32999273	0.77	[{'connected_gene': 'ITGB1', 'score': 0.44}, {'connected_gene': 'ITGB1-DT', 'score': 0.28}]
chr10	GH10I033201	33201423	33203083	0.31	[{'connected_gene': 'ITGB1', 'score': 4.76}, {'connected_gene': 'ENSG00000238258', 'score': 0.44}, {'connected_gene': 'LOC101929447', 'score': 0.17}, {'connected_gene': 'NRP1', 'score': 0.12}]
chr10	GH10I033003	33003355	33007728	1.7	[{'connected_gene': 'ITGB1', 'score': 550.77}, {'connected_gene': 'AK3P5', 'score': 12.35}, {'connected_gene': 'ENSG00000226842', 'score': 11.76}, {'connected_gene': 'EPC1', 'score': 11.7}, {'connected_gene': 'LOC105376486', 'score': 6.13}, {'connected_gene': 'ITGB1-DT', 'score': 0.25}]
chr10	GH10I032935	32935548	32935607	0.81	[{'connected_gene': 'ITGB1', 'score': 550.19}, {'connected_gene': 'AK3P5', 'score': 0.44}, {'connected_gene': 'LOC105376486', 'score': 0.28}]
chr10	GH10I032929	32929733	32929882	0.63	[{'connected_gene': 'ITGB1', 'score': 11.38}, {'connected_gene': 'AK3P5', 'score': 0.39}, {'connected_gene': 'LOC105376486', 'score': 0.29}]
chr10	GH10I032977	32977953	32978102	0.84	[{'connected_gene': 'LOC105376486', 'score': 13.67}, {'connected_gene': 'EPC1', 'score': 11.68}, {'connected_gene': 'ITGB1-DT', 'score': 0.37}, {'connected_gene': 'ITGB1', 'score': 0.31}]
chr10	GH10I032970	32970720	32973289	1.31	[{'connected_gene': 'LOC105376486', 'score': 18.6}, {'connected_gene': 'CCDC7', 'score': 7.35}, {'connected_gene': 'RPS4XP11', 'score': 5.34}, {'connected_gene': 'ITGB1-DT', 'score': 0.39}, {'connected_gene': 'ITGB1', 'score': 0.29}]
chr10	GH10I032922	32922933	32924599	0.38	[{'connected_gene': 'LOC105376486', 'score': 18.77}, {'connected_gene': 'CCDC7', 'score': 7.4}, {'connected_gene': 'AK3P5', 'score': 0.34}, {'connected_gene': 'ITGB1', 'score': 0.18}]
chr10	GH10I032937	32937207	32942400	1.22	[{'connected_gene': 'LOC105376486', 'score': 25.95}, {'connected_gene': 'CCDC7', 'score': 14.92}, {'connected_gene': 'AK3P5', 'score': 0.77}, {'connected_gene': 'ITGB1', 'score': 0.2}]
chr10	GH10I032930	32930797	32932878	0.52	[{'connected_gene': 'LOC105376486', 'score': 18.41}, {'connected_gene': 'ITGB1', 'score': 11.39}, {'connected_gene': 'CCDC7', 'score': 9.09}, {'connected_gene': 'AK3P5', 'score': 0.39}]
chr10	GH10I033008	33008234	33011349	1.3	[{'connected_gene': 'LOC105376486', 'score': 5.95}, {'connected_gene': 'ITGB1', 'score': 0.77}, {'connected_gene': 'MTND4LP11', 'score': 0.39}, {'connected_gene': 'ITGB1-DT', 'score': 0.23}]
chr10	GH10I033001	33001733	33002744	1.18	[{'connected_gene': 'LOC105376486', 'score': 7.4}, {'connected_gene': 'ITGB1', 'score': 0.77}, {'connected_gene': 'ITGB1-DT', 'score': 0.26}]
chr10	GH10I032994	32994920	32996166	0.82	[{'connected_gene': 'LOC105376486', 'score': 6.81}, {'connected_gene': 'ITGB1', 'score': 0.39}, {'connected_gene': 'ITGB1-DT', 'score': 0.28}]
chr10	GH10I032992	32992279	32993444	0.82	[{'connected_gene': 'LOC105376486', 'score': 7.74}, {'connected_gene': 'ITGB1', 'score': 0.39}, {'connected_gene': 'ITGB1-DT', 'score': 0.29}]
chr10	GH10I033015	33015503	33016442	0.78	[{'connected_gene': 'LOC105376486', 'score': 4.66}, {'connected_gene': 'MTND4LP11', 'score': 0.44}, {'connected_gene': 'ITGB1', 'score': 0.39}, {'connected_gene': 'ITGB1-DT', 'score': 0.22}]
chr10	GH10I032965	32965050	32965965	0.2	[{'connected_gene': 'LOC105376486', 'score': 18.21}, {'connected_gene': 'ITGB1-DT', 'score': 0.44}, {'connected_gene': 'ITGB1', 'score': 0.26}]
chr10	GH10I032933	32933121	32934437	0.2	[{'connected_gene': 'LOC105376486', 'score': 29.81}, {'connected_gene': 'AK3P5', 'score': 0.39}, {'connected_gene': 'ITGB1', 'score': 0.19}]
chr10	GH10I032910	32910113	32910262	0.2	[{'connected_gene': 'LOC105376486', 'score': 0.39}, {'connected_gene': 'AK3P5', 'score': 0.29}, {'connected_gene': 'ITGB1', 'score': 0.15}]
chr10	GH10I032924	32924831	32926361	0.2	[{'connected_gene': 'LOC105376486', 'score': 18.77}, {'connected_gene': 'AK3P5', 'score': 0.37}, {'connected_gene': 'ITGB1', 'score': 0.18}]
chr10	GH10I032445	32445083	32448140	2.04	[{'connected_gene': 'LOC101929431', 'score': 550.77}, {'connected_gene': 'CCDC7', 'score': 550.77}, {'connected_gene': 'LOC105376486', 'score': 16.25}, {'connected_gene': 'EPC1', 'score': 11.87}, {'connected_gene': 'ITGB1', 'score': 7.34}, {'connected_gene': 'GC10M032511', 'score': 0.2}]
chr10	GH10I032943	32943256	32946695	1.3	[{'connected_gene': 'AK3P5', 'score': 561.7}, {'connected_gene': 'EPC1', 'score': 12.58}, {'connected_gene': 'LOC105376486', 'score': 12.08}, {'connected_gene': 'ENSG00000226842', 'score': 10.74}, {'connected_gene': 'CCDC7', 'score': 7.56}, {'connected_gene': 'ITGB1-DT', 'score': 0.39}, {'connected_gene': 'ITGB1', 'score': 0.21}]
chr10	GH10I032942	32942601	32943000	0.4	[{'connected_gene': 'AK3P5', 'score': 550.77}, {'connected_gene': 'LOC105376486', 'score': 5.56}, {'connected_gene': 'ITGB1', 'score': 0.21}]
chr10	GH10I032923	32922313	32922462	0.8	[{'connected_gene': 'AK3P5', 'score': 0.34}, {'connected_gene': 'LOC105376486', 'score': 0.31}, {'connected_gene': 'ITGB1', 'score': 0.18}]
chr10	GH10I033178	33178043	33180754	0.97	[{'connected_gene': 'ENSG00000238258', 'score': 11.29}, {'connected_gene': 'NRP1', 'score': 11.09}, {'connected_gene': 'ITGB1', 'score': 4.88}, {'connected_gene': 'LOC101929447', 'score': 0.21}]
chr10	GH10I033192	33192106	33197943	1.36	[{'connected_gene': 'ENSG00000238258', 'score': 5.75}, {'connected_gene': 'ITGB1', 'score': 4.86}, {'connected_gene': 'LOC101929447', 'score': 0.18}, {'connected_gene': 'NRP1', 'score': 0.11}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000475184	[[33218751, 33218972], [33221442, 33221528], [33224419, 33224486], [33294542, 33294720]]	[[33218751, 33218972], [33221442, 33221528], [33224419, 33224486]]
ENST00000423113	[[33189246, 33190563], [33195990, 33196071], [33197295, 33197462], [33199150, 33199383], [33200375, 33200598], [33200813, 33201052], [33208812, 33209012], [33209172, 33209313], [33211184, 33211274], [33211567, 33211663], [33212512, 33212668], [33214798, 33215037], [33217021, 33217192], [33218749, 33218972], [33221442, 33221528], [33224419, 33224486]]	[[33195996, 33196071], [33197295, 33197462], [33199150, 33199383], [33200375, 33200598], [33200813, 33201052], [33208812, 33209012], [33209172, 33209313], [33211184, 33211274], [33211567, 33211663], [33212512, 33212668], [33214798, 33215037], [33217021, 33217192], [33218749, 33218972], [33221442, 33221528], [33224419, 33224486]]
ENST00000396033	[[33189246, 33190563], [33197295, 33197462], [33199150, 33199383], [33200375, 33200598], [33200813, 33201052], [33208812, 33209012], [33209172, 33209313], [33211184, 33211274], [33211567, 33211663], [33212512, 33212668], [33214798, 33215037], [33217021, 33217192], [33218749, 33218972], [33221442, 33221528], [33224419, 33224486], [33246686, 33246822]]	[[33190497, 33190563], [33197295, 33197462], [33199150, 33199383], [33200375, 33200598], [33200813, 33201052], [33208812, 33209012], [33209172, 33209313], [33211184, 33211274], [33211567, 33211663], [33212512, 33212668], [33214798, 33215037], [33217021, 33217192], [33218749, 33218972], [33221442, 33221528], [33224419, 33224486]]
ENST00000302278	[[33189319, 33190563], [33197295, 33197462], [33199150, 33199383], [33200375, 33200598], [33200813, 33201052], [33208812, 33209012], [33209172, 33209313], [33211184, 33211274], [33211567, 33211663], [33212512, 33212668], [33214798, 33215037], [33217021, 33217192], [33218749, 33218972], [33221442, 33221528], [33224419, 33224486], [33247072, 33247137]]	[[33190497, 33190563], [33197295, 33197462], [33199150, 33199383], [33200375, 33200598], [33200813, 33201052], [33208812, 33209012], [33209172, 33209313], [33211184, 33211274], [33211567, 33211663], [33212512, 33212668], [33214798, 33215037], [33217021, 33217192], [33218749, 33218972], [33221442, 33221528], [33224419, 33224486]]
ENST00000374956	[[33189327, 33190563], [33195392, 33195508], [33197295, 33197462], [33199150, 33199383], [33200375, 33200598], [33200813, 33201052], [33208812, 33209012], [33209172, 33209313], [33211184, 33211274], [33211567, 33211663], [33212512, 33212668], [33214798, 33215037], [33217021, 33217192], [33218749, 33218972], [33221442, 33221528], [33224419, 33224486], [33247072, 33247147]]	[[33190532, 33190563], [33195392, 33195508], [33197295, 33197462], [33199150, 33199383], [33200375, 33200598], [33200813, 33201052], [33208812, 33209012], [33209172, 33209313], [33211184, 33211274], [33211567, 33211663], [33212512, 33212668], [33214798, 33215037], [33217021, 33217192], [33218749, 33218972], [33221442, 33221528], [33224419, 33224486]]
ENST00000488427	[[33189919, 33190563], [33195990, 33196071], [33197295, 33197431]]	[[33195996, 33196071], [33197295, 33197431]]
ENST00000494395	[[33190491, 33190563], [33197295, 33197462], [33200454, 33200598], [33200813, 33200992]]	[[33197460, 33197462], [33200454, 33200598], [33200813, 33200992]]
ENST00000484088	[[33214888, 33215037], [33218768, 33218972], [33221442, 33221528], [33224419, 33224486], [33247072, 33247146]]	None
ENST00000480226	[[33217077, 33217192], [33218749, 33218972], [33221442, 33221528], [33224419, 33224486], [33244497, 33244591]]	[[33217077, 33217192], [33218749, 33218972], [33221442, 33221528], [33224419, 33224486]]
ENST00000474568	[[33217101, 33217192], [33218749, 33218972], [33221442, 33221528], [33222278, 33222511], [33224419, 33224486], [33247072, 33247160]]	[[33217101, 33217192], [33218749, 33218954]]
ENST00000488494	[[33217120, 33217192], [33218749, 33218972], [33221433, 33221528], [33224419, 33224486], [33247072, 33247155]]	[[33217120, 33217192], [33218749, 33218972], [33221433, 33221528], [33224419, 33224486]]
ENST00000534049	[[33217139, 33217192], [33218749, 33218972], [33221442, 33221528], [33224419, 33224486], [33281258, 33281391]]	[[33217139, 33217192], [33218749, 33218972], [33221442, 33221528], [33224419, 33224486]]
ENST00000437302	[[33217159, 33217192], [33218749, 33218972], [33221442, 33221528], [33224419, 33224486], [33246686, 33246722]]	[[33217159, 33217192], [33218749, 33218972], [33221442, 33221528], [33224419, 33224486]]
ENST00000528877	[[33218812, 33218972], [33221442, 33221528], [33224419, 33224486], [33249217, 33249294], [33250035, 33250088], [33252108, 33252211]]	[[33218812, 33218972], [33221442, 33221528], [33224419, 33224486]]
ENST00000417122	[[33218856, 33218972], [33221442, 33221528], [33224419, 33224486], [33242520, 33242737], [33247072, 33247155]]	[[33218856, 33218972], [33221442, 33221528], [33224419, 33224486]]
ENST00000464001	[[33218859, 33218972], [33221442, 33221645]]	None
ENST00000493758	[[33218861, 33218972], [33221442, 33221528], [33222409, 33222511], [33224419, 33224486]]	[[33218861, 33218954]]
ENST00000472147	[[33218912, 33218972], [33221442, 33221528], [33222278, 33222511], [33224419, 33224486], [33224822, 33225009], [33225144, 33225179]]	[[33218912, 33218954]]
ENST00000414670	[[33221448, 33221528], [33224419, 33224486], [33240602, 33240686], [33242520, 33242737], [33247072, 33247124]]	[[33221448, 33221528], [33224419, 33224486]]
ENST00000439974	[[33247413, 33247814], [33249252, 33249431]]	None
NM_033668	[[33189245, 33190563], [33195990, 33196071], [33197295, 33197462], [33199150, 33199383], [33200375, 33200598], [33200813, 33201052], [33208812, 33209012], [33209172, 33209313], [33211184, 33211274], [33211567, 33211663], [33212512, 33212668], [33214798, 33215037], [33217021, 33217192], [33218749, 33218972], [33221442, 33221528], [33224419, 33224486]]	[[33195996, 33196071], [33197295, 33197462], [33199150, 33199383], [33200375, 33200598], [33200813, 33201052], [33208812, 33209012], [33209172, 33209313], [33211184, 33211274], [33211567, 33211663], [33212512, 33212668], [33214798, 33215037], [33217021, 33217192], [33218749, 33218972], [33221442, 33221528], [33224419, 33224486]]
NM_133376	[[33189245, 33190563], [33197295, 33197462], [33199150, 33199383], [33200375, 33200598], [33200813, 33201052], [33208812, 33209012], [33209172, 33209313], [33211184, 33211274], [33211567, 33211663], [33212512, 33212668], [33214798, 33215037], [33217021, 33217192], [33218749, 33218972], [33221442, 33221528], [33224419, 33224486], [33246686, 33246822]]	[[33190497, 33190563], [33197295, 33197462], [33199150, 33199383], [33200375, 33200598], [33200813, 33201052], [33208812, 33209012], [33209172, 33209313], [33211184, 33211274], [33211567, 33211663], [33212512, 33212668], [33214798, 33215037], [33217021, 33217192], [33218749, 33218972], [33221442, 33221528], [33224419, 33224486]]
NM_002211	[[33189245, 33190563], [33197295, 33197462], [33199150, 33199383], [33200375, 33200598], [33200813, 33201052], [33208812, 33209012], [33209172, 33209313], [33211184, 33211274], [33211567, 33211663], [33212512, 33212668], [33214798, 33215037], [33217021, 33217192], [33218749, 33218972], [33221442, 33221528], [33224419, 33224486], [33247072, 33247293]]	[[33190497, 33190563], [33197295, 33197462], [33199150, 33199383], [33200375, 33200598], [33200813, 33201052], [33208812, 33209012], [33209172, 33209313], [33211184, 33211274], [33211567, 33211663], [33212512, 33212668], [33214798, 33215037], [33217021, 33217192], [33218749, 33218972], [33221442, 33221528], [33224419, 33224486]]