PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000560827	[[56536206, 56536476], [56665638, 56665702], [56676149, 56676229], [56680669, 56680718], [56681515, 56681598], [56683440, 56683583]]	[[56676191, 56676229], [56680669, 56680718], [56681515, 56681598], [56683440, 56683583]]
ENST00000352903	[[56657624, 56657675], [56657776, 56657868], [56665638, 56665702], [56676149, 56676229], [56680669, 56680718], [56681515, 56681598], [56683440, 56683616], [56686362, 56686445], [56686858, 56687032], [56704499, 56704634], [56719802, 56719937], [56720564, 56720671], [56737868, 56738072]]	[[56657648, 56657675], [56657776, 56657868], [56665638, 56665702], [56676149, 56676229], [56680669, 56680718], [56681515, 56681598], [56683440, 56683616], [56686362, 56686445], [56686858, 56687032], [56704499, 56704634], [56719802, 56719937], [56720564, 56720642]]
ENST00000537232	[[56657635, 56657675], [56657776, 56658091], [56665638, 56665702], [56676149, 56676229], [56680669, 56680718], [56681515, 56681598], [56683440, 56683616], [56686362, 56686445], [56686858, 56687032], [56704499, 56704634], [56719802, 56719937], [56720564, 56720671], [56737868, 56738195]]	[[56676191, 56676229], [56680669, 56680718], [56681515, 56681598], [56683440, 56683616], [56686362, 56686445], [56686858, 56687032], [56704499, 56704634], [56719802, 56719937], [56720564, 56720642]]
ENST00000561221	[[56657643, 56657675], [56657776, 56657868], [56665638, 56665702], [56676149, 56676229], [56680669, 56680718], [56681515, 56681598], [56683440, 56683616], [56686362, 56686445], [56686858, 56688496]]	[[56657648, 56657675], [56657776, 56657868], [56665638, 56665702], [56676149, 56676229], [56680669, 56680718], [56681515, 56681598], [56683440, 56683616], [56686362, 56686445], [56686858, 56687056]]
ENST00000558127	[[56657644, 56658091], [56665638, 56665702], [56683440, 56683616]]	[[56657648, 56657888]]
ENST00000558083	[[56657644, 56657868], [56665638, 56665702], [56676149, 56676229], [56680669, 56680718], [56681515, 56681598], [56683440, 56683616], [56686362, 56686445], [56686858, 56690539]]	[[56676191, 56676229], [56680669, 56680718], [56681515, 56681598], [56683440, 56683616], [56686362, 56686445], [56686858, 56687056]]
ENST00000559142	[[56665635, 56665702], [56666351, 56666821]]	None
ENST00000559546	[[56685851, 56686445], [56686858, 56686896]]	None
ENST00000560582	[[56686918, 56687032], [56704499, 56704634], [56720564, 56720910]]	[[56686936, 56687032], [56704499, 56704634], [56720564, 56720642]]
NM_198524	[[56657621, 56657675], [56657776, 56657868], [56665638, 56665702], [56676149, 56676229], [56680669, 56680718], [56681515, 56681598], [56683440, 56683616], [56686362, 56686445], [56686858, 56687032], [56704499, 56704634], [56719802, 56719937], [56720564, 56720671], [56737868, 56738195]]	[[56657648, 56657675], [56657776, 56657868], [56665638, 56665702], [56676149, 56676229], [56680669, 56680718], [56681515, 56681598], [56683440, 56683616], [56686362, 56686445], [56686858, 56687032], [56704499, 56704634], [56719802, 56719937], [56720564, 56720642]]
NM_001286449	[[56657621, 56657675], [56657776, 56658091], [56665638, 56665702], [56676149, 56676229], [56680669, 56680718], [56681515, 56681598], [56683440, 56683616], [56686362, 56686445], [56686858, 56687032], [56704499, 56704634], [56719802, 56719937], [56720564, 56720671], [56737868, 56738195]]	[[56676191, 56676229], [56680669, 56680718], [56681515, 56681598], [56683440, 56683616], [56686362, 56686445], [56686858, 56687032], [56704499, 56704634], [56719802, 56719937], [56720564, 56720642]]

Promoter

Chrom	Start	End	Description
chr15	56657613	56657651	CAGE_peak_1_at_TEX9_5end
chr15	56657670	56657684	CAGE_peak_2_at_TEX9_5end
chr15	56657732	56657743	CAGE_peak_4_at_TEX9_5end
chr15	56657750	56657757	CAGE_peak_6_at_TEX9_5end
chr15	56657762	56657777	CAGE_peak_3_at_TEX9_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I056425	56425741	56425924	0.22	[{'connected_gene': 'RFX7', 'score': 2.22}, {'connected_gene': 'MNS1', 'score': 1.9}, {'connected_gene': 'ZNF280D', 'score': 1.4}, {'connected_gene': 'TEX9', 'score': 1.24}, {'connected_gene': 'ENSG00000261823', 'score': 0.37}, {'connected_gene': 'ENSG00000277245', 'score': 0.34}]
chr15	GH15I056127	56127477	56127845	0.22	[{'connected_gene': 'RFX7', 'score': 7.93}, {'connected_gene': 'TEX9', 'score': 6.39}, {'connected_gene': 'GC15P056091', 'score': 0.28}, {'connected_gene': 'LOC390586', 'score': 0.2}]
chr15	GH15I056240	56240401	56246732	2.5	[{'connected_gene': 'RFX7', 'score': 581.93}, {'connected_gene': 'TEX9', 'score': 560.13}]
chr15	GH15I056207	56207135	56209479	0.79	[{'connected_gene': 'RFX7', 'score': 22.52}, {'connected_gene': 'TEX9', 'score': 9.24}, {'connected_gene': 'GC15M057437', 'score': 0.44}]
chr15	GH15I056215	56215363	56216211	0.64	[{'connected_gene': 'RFX7', 'score': 21.17}, {'connected_gene': 'TEX9', 'score': 9.29}, {'connected_gene': 'GC15M057437', 'score': 0.39}]
chr15	GH15I056464	56464400	56465712	1.95	[{'connected_gene': 'MNS1', 'score': 550.77}, {'connected_gene': 'TEX9', 'score': 5.83}, {'connected_gene': 'PIR31560', 'score': 0.44}, {'connected_gene': 'GC15M057417', 'score': 0.44}]
chr15	GH15I056731	56731408	56734492	2.2	[{'connected_gene': 'ZNF280D', 'score': 559.81}, {'connected_gene': 'RFX7', 'score': 12.4}, {'connected_gene': 'TEX9', 'score': 9.81}, {'connected_gene': 'LINC00926', 'score': 9.28}, {'connected_gene': 'ENSG00000274667', 'score': 0.77}, {'connected_gene': 'GC15M057422', 'score': 0.39}]
chr15	GH15I056037	56037742	56044220	1.53	[{'connected_gene': 'ZNF280D', 'score': 48.6}, {'connected_gene': 'RSL24D1', 'score': 23.8}, {'connected_gene': 'TEX9', 'score': 21.36}, {'connected_gene': 'PYGO1', 'score': 21.28}, {'connected_gene': 'PRTG', 'score': 21.17}, {'connected_gene': 'RFX7', 'score': 20.34}, {'connected_gene': 'MNS1', 'score': 19.09}, {'connected_gene': 'TCF12', 'score': 12.6}, {'connected_gene': 'PIGBOS1', 'score': 11.12}, {'connected_gene': 'RN7SL568P', 'score': 0.39}, {'connected_gene': 'CD24P2', 'score': 0.29}]
chr15	GH15I056320	56320523	56320672	0.8	[{'connected_gene': 'TEX9', 'score': 15.52}, {'connected_gene': 'RFX7', 'score': 8.88}, {'connected_gene': 'HMGB1P33', 'score': 0.77}, {'connected_gene': 'RNU6-1287P', 'score': 0.25}, {'connected_gene': 'GC15M056738', 'score': 0.25}]
chr15	GH15I056364	56364747	56366542	2.15	[{'connected_gene': 'TEX9', 'score': 555.19}, {'connected_gene': 'RFX7', 'score': 10.87}, {'connected_gene': 'ENSG00000259941', 'score': 0.29}, {'connected_gene': 'HMGB1P33', 'score': 0.26}]
chr15	GH15I056261	56261963	56262112	0.31	[{'connected_gene': 'TEX9', 'score': 5.43}, {'connected_gene': 'RNU6-1287P', 'score': 0.39}, {'connected_gene': 'ENSG00000275417', 'score': 0.39}, {'connected_gene': 'GC15M056738', 'score': 0.39}]
chr15	GH15I056491	56491223	56491412	0.57	[{'connected_gene': 'TEX9', 'score': 8.94}, {'connected_gene': 'LOC105370831', 'score': 0.44}, {'connected_gene': 'LOC105370832', 'score': 0.12}]
chr15	GH15I056327	56327823	56327992	0.43	[{'connected_gene': 'TEX9', 'score': 16.33}, {'connected_gene': 'HMGB1P33', 'score': 0.77}, {'connected_gene': 'ENSG00000259941', 'score': 0.2}]
chr15	GH15I056342	56342503	56342652	0.31	[{'connected_gene': 'TEX9', 'score': 5.2}, {'connected_gene': 'HMGB1P33', 'score': 0.37}, {'connected_gene': 'ENSG00000259941', 'score': 0.23}]
chr15	GH15I055740	55740400	55744271	1.97	[{'connected_gene': 'PRTG', 'score': 564.01}, {'connected_gene': 'TEX9', 'score': 9.8}, {'connected_gene': 'GC15M057408', 'score': 0.77}]
chr15	GH15I055823	55823303	55823532	0.93	[{'connected_gene': 'PYGO1', 'score': 14.36}, {'connected_gene': 'TEX9', 'score': 13.21}, {'connected_gene': 'PRTG', 'score': 12.04}, {'connected_gene': 'PIGBOS1', 'score': 11.13}, {'connected_gene': 'MNS1', 'score': 10.69}, {'connected_gene': 'GC15P055749', 'score': 0.19}, {'connected_gene': 'NEDD4', 'score': 0.09}]
chr15	GH15I056323	56323150	56323409	0.48	[{'connected_gene': 'HMGB1P33', 'score': 550.77}, {'connected_gene': 'RFX7', 'score': 8.59}, {'connected_gene': 'ENSG00000259941', 'score': 0.19}, {'connected_gene': 'TEX9', 'score': 0.18}]
chr15	GH15I056248	56248236	56249352	0.59	[{'connected_gene': 'ENSG00000275417', 'score': 550.77}, {'connected_gene': 'RFX7', 'score': 24.66}, {'connected_gene': 'TEX9', 'score': 0.77}, {'connected_gene': 'RNU6-1287P', 'score': 0.31}, {'connected_gene': 'GC15M056738', 'score': 0.31}]
chr15	GH15I056251	56251523	56251672	0.89	[{'connected_gene': 'ENSG00000275417', 'score': 0.77}, {'connected_gene': 'TEX9', 'score': 0.44}, {'connected_gene': 'RNU6-1287P', 'score': 0.34}, {'connected_gene': 'GC15M056738', 'score': 0.34}]
chr15	GH15I056469	56469401	56469600	0.64	[{'connected_gene': 'GC15P056467', 'score': 550.77}, {'connected_gene': 'TEX9', 'score': 4.55}, {'connected_gene': 'GC15M057433', 'score': 0.39}]
chr15	GH15I056370	56370190	56373497	0.94	[{'connected_gene': 'ENSG00000259941', 'score': 0.34}, {'connected_gene': 'HMGB1P33', 'score': 0.25}, {'connected_gene': 'TEX9', 'score': 0.13}]