PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr12	75601501	75601517	CAGE_peak_11_at_KCNC2_5end
chr12	75601778	75601789	CAGE_peak_7_at_KCNC2_5end
chr12	75603154	75603174	CAGE_peak_6_at_KCNC2_5end
chr12	75603202	75603233	CAGE_peak_2_at_KCNC2_5end
chr12	75603236	75603283	CAGE_peak_3_at_KCNC2_5end
chr12	75603416	75603425	CAGE_peak_14_at_KCNC2_5end
chr12	75603482	75603534	CAGE_peak_1_at_KCNC2_5end
chr12	75603536	75603547	CAGE_peak_9_at_KCNC2_5end
chr12	75603594	75603611	CAGE_peak_5_at_KCNC2_5end
chr12	75603612	75603628	CAGE_peak_4_at_KCNC2_5end
chr12	75603643	75603652	CAGE_peak_19_at_KCNC2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I074963	74963412	74964330	0.73	[{'connected_gene': 'KCNC2', 'score': 5.63}, {'connected_gene': 'ENSG00000257434', 'score': 0.22}, {'connected_gene': 'LOC105369842', 'score': 0.13}]
chr12	GH12I074945	74945861	74946090	0.57	[{'connected_gene': 'KCNC2', 'score': 6.43}, {'connected_gene': 'ENSG00000257434', 'score': 0.19}, {'connected_gene': 'LOC105369842', 'score': 0.15}]
chr12	GH12I074889	74889164	74890910	0.95	[{'connected_gene': 'KCNC2', 'score': 5.62}, {'connected_gene': 'LOC105369842', 'score': 0.26}, {'connected_gene': 'ENSG00000257434', 'score': 0.12}]
chr12	GH12I075130	75130941	75131150	0.67	[{'connected_gene': 'KCNC2', 'score': 10.12}, {'connected_gene': 'GC12M075050', 'score': 0.18}]
chr12	GH12I075209	75209738	75209797	0.76	[{'connected_gene': 'KCNC2', 'score': 550.77}, {'connected_gene': 'GC12M075050', 'score': 0.1}]
chr12	GH12I075210	75209427	75209486	0.68	[{'connected_gene': 'KCNC2', 'score': 550.77}, {'connected_gene': 'GC12M075050', 'score': 0.1}]
chr12	GH12I075207	75207994	75208053	0.61	[{'connected_gene': 'KCNC2', 'score': 550.77}, {'connected_gene': 'GC12M075050', 'score': 0.1}]
chr12	GH12I075177	75177316	75178750	1.12	[{'connected_gene': 'KCNC2', 'score': 11.81}, {'connected_gene': 'GC12M075050', 'score': 0.13}]
chr12	GH12I075270	75270241	75270390	0.2	[{'connected_gene': 'GLIPR1L2', 'score': 23.42}, {'connected_gene': 'KCNC2', 'score': 11.04}, {'connected_gene': 'CCNG2P1', 'score': 0.39}, {'connected_gene': 'LOC100130268', 'score': 0.28}, {'connected_gene': 'LOC100419702', 'score': 0.28}, {'connected_gene': 'CAPS2', 'score': 0.13}]
chr12	GH12I075505	75505619	75506510	0.74	[{'connected_gene': 'GLIPR1L2', 'score': 63.56}, {'connected_gene': 'GLIPR1L1', 'score': 11.89}, {'connected_gene': 'GLIPR1', 'score': 11.23}, {'connected_gene': 'CAPS2', 'score': 10.96}, {'connected_gene': 'PHLDA1', 'score': 10.28}, {'connected_gene': 'KCNC2', 'score': 8.78}, {'connected_gene': 'KRR1', 'score': 0.44}, {'connected_gene': 'ENSG00000257497', 'score': 0.37}]
chr12	GH12I075507	75507127	75507635	0.66	[{'connected_gene': 'KRR1', 'score': 37.88}, {'connected_gene': 'GLIPR1L1', 'score': 11.89}, {'connected_gene': 'GLIPR1', 'score': 11.23}, {'connected_gene': 'CAPS2', 'score': 10.96}, {'connected_gene': 'GLIPR1L2', 'score': 10.96}, {'connected_gene': 'PHLDA1', 'score': 10.28}, {'connected_gene': 'KCNC2', 'score': 8.78}, {'connected_gene': 'ENSG00000257497', 'score': 0.37}]
chr12	GH12I075508	75508283	75513161	2.54	[{'connected_gene': 'KRR1', 'score': 622.93}, {'connected_gene': 'ENSG00000257497', 'score': 23.36}, {'connected_gene': 'GLIPR1L2', 'score': 16.04}, {'connected_gene': 'GLIPR1L1', 'score': 11.89}, {'connected_gene': 'GLIPR1', 'score': 11.21}, {'connected_gene': 'CAPS2', 'score': 10.96}, {'connected_gene': 'PHLDA1', 'score': 10.28}, {'connected_gene': 'KCNC2', 'score': 8.78}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000550433	[[75433856, 75434986], [75441932, 75442097], [75444169, 75445097], [75601076, 75601784]]	[[75434876, 75434986], [75441932, 75442097], [75444169, 75445097], [75601076, 75601763]]
ENST00000548513	[[75433856, 75434986], [75436059, 75436154], [75441932, 75442097], [75444169, 75445097], [75601076, 75601784]]	[[75436092, 75436154], [75441932, 75442097], [75444169, 75445097], [75601076, 75601763]]
ENST00000549446	[[75433857, 75437021], [75441932, 75442097], [75444169, 75445097], [75601076, 75601782], [75602986, 75603648]]	[[75436884, 75437021], [75441932, 75442097], [75444169, 75445097], [75601076, 75601763]]
ENST00000298972	[[75433895, 75434986], [75436059, 75436154], [75441932, 75442097], [75444169, 75445097], [75601076, 75601782], [75602986, 75603511]]	[[75436092, 75436154], [75441932, 75442097], [75444169, 75445097], [75601076, 75601763]]
ENST00000341669	[[75433895, 75434986], [75441932, 75442097], [75444169, 75445097], [75601076, 75601782], [75602986, 75603511]]	[[75434876, 75434986], [75441932, 75442097], [75444169, 75445097], [75601076, 75601763]]
ENST00000350228	[[75433896, 75434986], [75436059, 75436154], [75444169, 75445097], [75601076, 75601782], [75602986, 75603511]]	[[75436092, 75436154], [75444169, 75445097], [75601076, 75601763]]
ENST00000540018	[[75436740, 75437021], [75444169, 75445097], [75601076, 75601782], [75602986, 75603239]]	[[75436884, 75437021], [75444169, 75445097], [75601076, 75601763]]
ENST00000393288	[[75437136, 75437593], [75441932, 75442097], [75444169, 75445097], [75601076, 75601782], [75602986, 75603215]]	[[75437516, 75437593], [75441932, 75442097], [75444169, 75445097], [75601076, 75601763]]
ENST00000546456	[[75444846, 75445097], [75517789, 75517892], [75518585, 75518718], [75533929, 75533976]]	None
ENST00000548243	[[75442008, 75442042], [75444169, 75444707]]	None
NM_001260497	[[75433857, 75437593], [75441932, 75442097], [75444169, 75445097], [75601076, 75601782], [75602986, 75603528]]	[[75437516, 75437593], [75441932, 75442097], [75444169, 75445097], [75601076, 75601763]]
NM_139137	[[75433857, 75437021], [75441932, 75442097], [75444169, 75445097], [75601076, 75601782], [75602986, 75603528]]	[[75436884, 75437021], [75441932, 75442097], [75444169, 75445097], [75601076, 75601763]]
NM_139136	[[75433857, 75434986], [75436059, 75436154], [75441932, 75442097], [75444169, 75445097], [75601076, 75601782], [75602986, 75603528]]	[[75436092, 75436154], [75441932, 75442097], [75444169, 75445097], [75601076, 75601763]]
NM_001260498	[[75433857, 75434986], [75441932, 75442097], [75444169, 75445097], [75601076, 75601782], [75602986, 75603528]]	[[75434876, 75434986], [75441932, 75442097], [75444169, 75445097], [75601076, 75601763]]
NM_001260499	[[75433857, 75437021], [75444169, 75445097], [75601076, 75601782], [75602986, 75603528]]	[[75436884, 75437021], [75444169, 75445097], [75601076, 75601763]]
NM_153748	[[75433857, 75434986], [75436059, 75436154], [75444169, 75445097], [75601076, 75601782], [75602986, 75603528]]	[[75436092, 75436154], [75444169, 75445097], [75601076, 75601763]]