PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000368089	[[160007256, 160012322], [160039811, 160040038]]	[[160011182, 160012322]]
ENST00000509700	[[160010260, 160010391], [160011623, 160012085]]	None
NM_002241	[[160007256, 160012322], [160039811, 160040051]]	[[160011182, 160012322]]

Promoter

Chrom	Start	End	Description
chr1	160009700	160009711	CAGE_peak_10_at_KCNJ10_5end
chr1	160011393	160011404	CAGE_peak_6_at_KCNJ10_5end
chr1	160039892	160039909	CAGE_peak_4_at_KCNJ10_5end
chr1	160039914	160039937	CAGE_peak_2_at_KCNJ10_5end
chr1	160039940	160039963	CAGE_peak_1_at_KCNJ10_5end
chr1	160039975	160039986	CAGE_peak_5_at_KCNJ10_5end
chr1	160040043	160040064	CAGE_peak_3_at_KCNJ10_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I160075	160075471	160075540	0.2	[{'connected_gene': 'IGSF8', 'score': 11.38}, {'connected_gene': 'PIGM', 'score': 10.21}, {'connected_gene': 'KCNJ9', 'score': 0.77}, {'connected_gene': 'KCNJ10', 'score': 0.44}, {'connected_gene': 'ENSG00000225279', 'score': 0.39}]
chr1	GH01I160095	160095441	160103654	2.65	[{'connected_gene': 'IGSF8', 'score': 561.74}, {'connected_gene': 'ATP1A4', 'score': 15.64}, {'connected_gene': 'CASQ1', 'score': 11.06}, {'connected_gene': 'KCNJ10', 'score': 11.02}, {'connected_gene': 'PEA15', 'score': 10.44}, {'connected_gene': 'DCAF8', 'score': 10.43}, {'connected_gene': 'PEX19', 'score': 10.42}, {'connected_gene': 'PIGM', 'score': 9.93}, {'connected_gene': 'ENSG00000225279', 'score': 9.74}, {'connected_gene': 'ATP1A2', 'score': 2.2}, {'connected_gene': 'KCNJ9', 'score': 1.98}]
chr1	GH01I160030	160030424	160032926	2.03	[{'connected_gene': 'PIGM', 'score': 555.76}, {'connected_gene': 'ENSG00000260766', 'score': 8.15}, {'connected_gene': 'KCNJ10', 'score': 0.28}]
chr1	GH01I159936	159936201	159946713	2.66	[{'connected_gene': 'IGSF9', 'score': 559.99}, {'connected_gene': 'ATP1A4', 'score': 51.6}, {'connected_gene': 'KCNJ10', 'score': 12.41}, {'connected_gene': 'NHLH1', 'score': 6.2}, {'connected_gene': 'LINC01133', 'score': 6.08}, {'connected_gene': 'VSIG8', 'score': 5.95}, {'connected_gene': 'CFAP45', 'score': 4.42}, {'connected_gene': 'VANGL2', 'score': 2.07}, {'connected_gene': 'TAGLN2', 'score': 0.37}]
chr1	GH01I160139	160139335	160142648	0.31	[{'connected_gene': 'ATP1A4', 'score': 19.17}, {'connected_gene': 'CASQ1', 'score': 17.25}, {'connected_gene': 'ATP1A2', 'score': 11.87}, {'connected_gene': 'DCAF8', 'score': 10.87}, {'connected_gene': 'IGSF8', 'score': 10.64}, {'connected_gene': 'LOC100287049', 'score': 10.39}, {'connected_gene': 'KCNJ10', 'score': 9.87}, {'connected_gene': 'PIGM', 'score': 9.74}, {'connected_gene': 'PEA15', 'score': 6.12}, {'connected_gene': 'GC01M160128', 'score': 0.39}]
chr1	GH01I160006	160006431	160006540	0.62	[{'connected_gene': 'ATP1A4', 'score': 4.59}, {'connected_gene': 'RPL27AP2', 'score': 0.39}, {'connected_gene': 'FCRL6P1', 'score': 0.29}, {'connected_gene': 'KCNJ10', 'score': 0.21}]
chr1	GH01I160111	160111917	160118660	1.63	[{'connected_gene': 'ATP1A2', 'score': 560.0}, {'connected_gene': 'ATP1A4', 'score': 8.92}, {'connected_gene': 'IGSF8', 'score': 7.33}, {'connected_gene': 'KCNJ10', 'score': 4.75}, {'connected_gene': 'KCNJ9', 'score': 4.46}, {'connected_gene': 'PEA15', 'score': 2.38}]
chr1	GH01I160085	160085731	160087163	1.23	[{'connected_gene': 'ATP1A2', 'score': 15.59}, {'connected_gene': 'KCNJ9', 'score': 15.36}, {'connected_gene': 'PIGM', 'score': 10.43}, {'connected_gene': 'IGSF8', 'score': 8.21}, {'connected_gene': 'ATP1A4', 'score': 8.2}, {'connected_gene': 'KCNJ10', 'score': 4.63}, {'connected_gene': 'PEA15', 'score': 2.29}]
chr1	GH01I160070	160070071	160070856	1.95	[{'connected_gene': 'KCNJ10', 'score': 550.77}, {'connected_gene': 'IGSF8', 'score': 7.5}, {'connected_gene': 'ENSG00000225279', 'score': 0.44}]
chr1	GH01I160046	160046210	160047400	1.4	[{'connected_gene': 'KCNJ9', 'score': 11.29}, {'connected_gene': 'IGSF8', 'score': 10.42}, {'connected_gene': 'ENSG00000260766', 'score': 7.6}, {'connected_gene': 'PIGM', 'score': 0.39}, {'connected_gene': 'ENSG00000225279', 'score': 0.37}, {'connected_gene': 'KCNJ10', 'score': 0.34}]
chr1	GH01I160104	160104001	160105312	0.78	[{'connected_gene': 'KCNJ9', 'score': 11.31}, {'connected_gene': 'CASQ1', 'score': 11.07}, {'connected_gene': 'PEA15', 'score': 10.44}, {'connected_gene': 'DCAF8', 'score': 10.44}, {'connected_gene': 'PEX19', 'score': 10.43}, {'connected_gene': 'PIGM', 'score': 9.92}, {'connected_gene': 'ATP1A4', 'score': 9.82}, {'connected_gene': 'ENSG00000225279', 'score': 9.72}, {'connected_gene': 'KCNJ10', 'score': 9.61}, {'connected_gene': 'IGSF8', 'score': 7.84}, {'connected_gene': 'ATP1A2', 'score': 0.39}]
chr1	GH01I160374	160374401	160376843	1.51	[{'connected_gene': 'NCSTN', 'score': 31.56}, {'connected_gene': 'KCNJ10', 'score': 12.34}, {'connected_gene': 'COPA', 'score': 11.44}, {'connected_gene': 'RNU4-42P', 'score': 0.37}, {'connected_gene': 'GC01P160354', 'score': 0.34}, {'connected_gene': 'LOC105371466', 'score': 0.29}]
chr1	GH01I160003	160003152	160006002	0.38	[{'connected_gene': 'ENSG00000260766', 'score': 4.56}, {'connected_gene': 'RPL27AP2', 'score': 0.39}, {'connected_gene': 'FCRL6P1', 'score': 0.29}, {'connected_gene': 'KCNJ10', 'score': 0.2}]