PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000252242	[[52908358, 52909024], [52909581, 52909616], [52910420, 52910641], [52910890, 52911016], [52911373, 52911538], [52911680, 52911776], [52911886, 52911947], [52912729, 52912944], [52913525, 52914471]]	[[52908725, 52909024], [52909581, 52909616], [52910420, 52910641], [52910890, 52911016], [52911373, 52911538], [52911680, 52911776], [52911886, 52911947], [52912729, 52912944], [52913525, 52914080]]
ENST00000552952	[[52908779, 52909024], [52909581, 52909980]]	None
ENST00000549511	[[52908896, 52909024], [52909581, 52909616], [52910420, 52910641], [52910890, 52911016], [52911373, 52911672]]	None
ENST00000548409	[[52909241, 52909616], [52910420, 52910641], [52910890, 52911016], [52911373, 52911538], [52911680, 52911729]]	[[52909573, 52909616], [52910420, 52910641], [52910890, 52911016], [52911373, 52911538], [52911680, 52911729]]
ENST00000552629	[[52909911, 52910641], [52910890, 52911016], [52911373, 52911538], [52911680, 52911776], [52911886, 52911947], [52912729, 52912944], [52913525, 52914178]]	None
ENST00000547890	[[52910473, 52911016], [52911373, 52911538], [52911680, 52911736]]	None
ENST00000551013	[[52910940, 52911016], [52911373, 52911538], [52911680, 52911947], [52912729, 52912944], [52913318, 52913401]]	None
ENST00000551188	[[52910964, 52911016], [52911373, 52911538], [52911680, 52911776], [52911886, 52911947], [52912236, 52912277], [52912729, 52912901]]	[[52910964, 52911016], [52911373, 52911538], [52911680, 52911776], [52911886, 52911947], [52912236, 52912277], [52912729, 52912901]]
ENST00000549420	[[52911741, 52911776], [52911886, 52911947], [52912729, 52912944], [52913525, 52913707], [52914037, 52914155]]	[[52911741, 52911776], [52911886, 52911947], [52912729, 52912944], [52913525, 52913707], [52914037, 52914080]]
ENST00000551275	[[52913534, 52913803], [52913908, 52914178]]	[[52913534, 52913803], [52913908, 52914080]]
ENST00000546577	[[52913684, 52914092], [52914180, 52914314]]	[[52913684, 52914080]]
NM_000424	[[52908358, 52909024], [52909581, 52909616], [52910420, 52910641], [52910890, 52911016], [52911373, 52911538], [52911680, 52911776], [52911886, 52911947], [52912729, 52912944], [52913525, 52914243]]	[[52908725, 52909024], [52909581, 52909616], [52910420, 52910641], [52910890, 52911016], [52911373, 52911538], [52911680, 52911776], [52911886, 52911947], [52912729, 52912944], [52913525, 52914080]]

Promoter

Chrom	Start	End	Description
chr12	52911397	52911445	CAGE_peak_5_at_KRT5_5end
chr12	52911499	52911548	CAGE_peak_6_at_KRT5_5end
chr12	52911718	52911760	CAGE_peak_3_at_KRT5_5end
chr12	52911768	52911778	CAGE_peak_9_at_KRT5_5end
chr12	52911917	52911958	CAGE_peak_2_at_KRT5_5end
chr12	52912779	52912805	CAGE_peak_7_at_KRT5_5end
chr12	52912957	52912973	CAGE_peak_17_at_KRT5_5end
chr12	52913230	52913233	CAGE_peak_11_at_KRT5_5end
chr12	52913583	52913599	CAGE_peak_8_at_KRT5_5end
chr12	52913604	52913643	CAGE_peak_4_at_KRT5_5end
chr12	52914170	52914185	CAGE_peak_1_at_KRT5_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I052277	52277299	52286486	1.73	[{'connected_gene': 'KRT86', 'score': 27.96}, {'connected_gene': 'ZNF740', 'score': 15.06}, {'connected_gene': 'KRT80', 'score': 13.3}, {'connected_gene': 'KRT7', 'score': 13.27}, {'connected_gene': 'HNRNPA3P10', 'score': 12.85}, {'connected_gene': 'CSAD', 'score': 11.97}, {'connected_gene': 'KRT87P', 'score': 11.89}, {'connected_gene': 'KRT83', 'score': 11.14}, {'connected_gene': 'ENSG00000257808', 'score': 9.87}, {'connected_gene': 'NR4A1', 'score': 3.36}, {'connected_gene': 'ATG101', 'score': 3.05}, {'connected_gene': 'KRT5', 'score': 1.77}, {'connected_gene': 'KRT6A', 'score': 1.65}, {'connected_gene': 'KRT84', 'score': 1.29}, {'connected_gene': 'ENSG00000257830', 'score': 0.77}, {'connected_gene': 'KRT81', 'score': 0.31}, {'connected_gene': 'ENSG00000257829', 'score': 0.31}, {'connected_gene': 'GC12P052156', 'score': 0.13}]
chr12	GH12I052491	52491379	52497734	1.85	[{'connected_gene': 'KRT6A', 'score': 563.51}, {'connected_gene': 'KRT6C', 'score': 21.45}, {'connected_gene': 'KRT5', 'score': 19.58}, {'connected_gene': 'KRT71', 'score': 10.39}, {'connected_gene': 'KRT82', 'score': 10.29}, {'connected_gene': 'KRT84', 'score': 10.01}, {'connected_gene': 'KRT87P', 'score': 9.88}, {'connected_gene': 'KRT86', 'score': 9.88}, {'connected_gene': 'KRT2', 'score': 9.71}, {'connected_gene': 'KRT78', 'score': 9.69}, {'connected_gene': 'KRT83', 'score': 9.47}, {'connected_gene': 'PFDN5', 'score': 4.93}, {'connected_gene': 'KRT6B', 'score': 3.27}, {'connected_gene': 'ATG101', 'score': 1.61}, {'connected_gene': 'KRT75', 'score': 1.48}, {'connected_gene': 'KRT7', 'score': 1.33}, {'connected_gene': 'KRT18', 'score': 1.3}, {'connected_gene': 'GC12M052518', 'score': 0.34}]
chr12	GH12I052513	52513353	52514578	0.77	[{'connected_gene': 'KRT6A', 'score': 10.71}, {'connected_gene': 'KRT71', 'score': 10.38}, {'connected_gene': 'KRT6C', 'score': 10.03}, {'connected_gene': 'KRT5', 'score': 5.54}, {'connected_gene': 'ENSG00000259884', 'score': 5.2}, {'connected_gene': 'GC12M052518', 'score': 0.44}]
chr12	GH12I052515	52515331	52526757	1.77	[{'connected_gene': 'KRT5', 'score': 568.84}, {'connected_gene': 'GC12M052518', 'score': 550.77}, {'connected_gene': 'KRT6A', 'score': 17.52}, {'connected_gene': 'KRT6C', 'score': 11.83}, {'connected_gene': 'KRT71', 'score': 11.19}, {'connected_gene': 'KRT74', 'score': 10.6}, {'connected_gene': 'KRT84', 'score': 9.95}, {'connected_gene': 'KRT2', 'score': 9.93}, {'connected_gene': 'KRT4', 'score': 9.72}, {'connected_gene': 'KRT82', 'score': 9.69}, {'connected_gene': 'KRT83', 'score': 9.27}, {'connected_gene': 'KRT78', 'score': 9.22}, {'connected_gene': 'ENSG00000259884', 'score': 5.2}, {'connected_gene': 'KRT6B', 'score': 4.2}, {'connected_gene': 'KRT1', 'score': 4.16}, {'connected_gene': 'KRT76', 'score': 3.68}, {'connected_gene': 'ATG101', 'score': 2.28}, {'connected_gene': 'KRT75', 'score': 1.53}, {'connected_gene': 'GC12P052543', 'score': 0.34}]
chr12	GH12I052869	52869799	52876851	1.78	[{'connected_gene': 'KRT2', 'score': 20.63}, {'connected_gene': 'PCBP2', 'score': 19.35}, {'connected_gene': 'EIF4B', 'score': 15.65}, {'connected_gene': 'AAAS', 'score': 15.53}, {'connected_gene': 'SP1', 'score': 14.86}, {'connected_gene': 'ZNF740', 'score': 14.44}, {'connected_gene': 'ATF7', 'score': 12.74}, {'connected_gene': 'KRT84', 'score': 12.12}, {'connected_gene': 'LOC100652999', 'score': 12.05}, {'connected_gene': 'PFDN5', 'score': 10.79}, {'connected_gene': 'CALCOCO1', 'score': 10.75}, {'connected_gene': 'KRT79', 'score': 10.51}, {'connected_gene': 'ENSG00000257808', 'score': 9.79}, {'connected_gene': 'KRT4', 'score': 7.83}, {'connected_gene': 'KRT8', 'score': 7.29}, {'connected_gene': 'KRT18', 'score': 6.57}, {'connected_gene': 'KRT78', 'score': 6.4}, {'connected_gene': 'KRT3', 'score': 5.12}, {'connected_gene': 'KRT6C', 'score': 3.8}, {'connected_gene': 'KRT76', 'score': 3.79}, {'connected_gene': 'KRT1', 'score': 3.04}, {'connected_gene': 'RARG', 'score': 2.73}, {'connected_gene': 'KRT6A', 'score': 1.41}, {'connected_gene': 'KRT5', 'score': 1.26}, {'connected_gene': 'RPL7P41', 'score': 0.39}]
chr12	GH12I052566	52566380	52568150	0.52	[{'connected_gene': 'KRT1', 'score': 10.89}, {'connected_gene': 'KRT5', 'score': 10.09}, {'connected_gene': 'KRT79', 'score': 9.83}, {'connected_gene': 'KRT78', 'score': 9.73}, {'connected_gene': 'KRT4', 'score': 9.49}, {'connected_gene': 'KRT72', 'score': 8.4}, {'connected_gene': 'KRT73', 'score': 4.76}, {'connected_gene': 'KRT74', 'score': 0.44}, {'connected_gene': 'KRT71', 'score': 0.39}, {'connected_gene': 'GC12P052549', 'score': 0.37}]
chr12	GH12I052859	52859506	52861333	1.33	[{'connected_gene': 'KRT79', 'score': 11.14}, {'connected_gene': 'KRT4', 'score': 10.85}, {'connected_gene': 'KRT76', 'score': 10.38}, {'connected_gene': 'KRT1', 'score': 10.36}, {'connected_gene': 'KRT2', 'score': 9.84}, {'connected_gene': 'KRT83', 'score': 9.51}, {'connected_gene': 'KRT71', 'score': 9.36}, {'connected_gene': 'KRT6A', 'score': 2.04}, {'connected_gene': 'RARG', 'score': 1.81}, {'connected_gene': 'KRT5', 'score': 1.47}, {'connected_gene': 'KRT78', 'score': 0.39}, {'connected_gene': 'RPL7P41', 'score': 0.31}]
chr12	GH12I052499	52499348	52501040	0.2	[{'connected_gene': 'KRT6C', 'score': 21.18}, {'connected_gene': 'KRT5', 'score': 11.17}, {'connected_gene': 'KRT71', 'score': 10.4}, {'connected_gene': 'KRT82', 'score': 10.28}, {'connected_gene': 'KRT84', 'score': 10.0}, {'connected_gene': 'KRT87P', 'score': 9.88}, {'connected_gene': 'KRT86', 'score': 9.88}, {'connected_gene': 'KRT78', 'score': 9.69}, {'connected_gene': 'KRT83', 'score': 9.48}, {'connected_gene': 'KRT2', 'score': 9.21}, {'connected_gene': 'KRT6A', 'score': 7.13}, {'connected_gene': 'GC12M052518', 'score': 0.37}]
chr12	GH12I052506	52506844	52507581	0.63	[{'connected_gene': 'KRT6C', 'score': 10.61}, {'connected_gene': 'KRT71', 'score': 10.36}, {'connected_gene': 'KRT82', 'score': 10.21}, {'connected_gene': 'KRT84', 'score': 10.15}, {'connected_gene': 'KRT78', 'score': 9.64}, {'connected_gene': 'KRT4', 'score': 9.33}, {'connected_gene': 'ENSG00000259884', 'score': 5.88}, {'connected_gene': 'KRT5', 'score': 5.5}, {'connected_gene': 'GC12M052518', 'score': 0.39}, {'connected_gene': 'KRT6A', 'score': 0.39}]
chr12	GH12I052538	52538841	52539845	0.79	[{'connected_gene': 'KRT74', 'score': 11.18}, {'connected_gene': 'KRT84', 'score': 9.68}, {'connected_gene': 'KRT4', 'score': 9.62}, {'connected_gene': 'GC12P052543', 'score': 0.77}, {'connected_gene': 'KRT5', 'score': 0.37}]
chr12	GH12I052531	52531757	52531906	0.2	[{'connected_gene': 'KRT71', 'score': 11.31}, {'connected_gene': 'KRT84', 'score': 9.99}, {'connected_gene': 'KRT5', 'score': 0.39}, {'connected_gene': 'GC12P052543', 'score': 0.39}]
chr12	GH12I052143	52143138	52158068	1.71	[{'connected_gene': 'HNRNPA3P10', 'score': 24.14}, {'connected_gene': 'EIF4B', 'score': 15.56}, {'connected_gene': 'KRT7-AS', 'score': 10.63}, {'connected_gene': 'KRT5', 'score': 9.83}, {'connected_gene': 'ENSG00000257989', 'score': 7.16}, {'connected_gene': 'KRT7', 'score': 5.58}, {'connected_gene': 'KRT6A', 'score': 5.14}, {'connected_gene': 'OR7E47P', 'score': 4.87}, {'connected_gene': 'IGFBP6', 'score': 4.66}, {'connected_gene': 'KRT6C', 'score': 4.45}, {'connected_gene': 'KRT80', 'score': 2.94}, {'connected_gene': 'ATG101', 'score': 2.52}, {'connected_gene': 'KRT84', 'score': 1.86}, {'connected_gene': 'NR4A1', 'score': 1.79}, {'connected_gene': 'KRT6B', 'score': 1.23}, {'connected_gene': 'GC12P052156', 'score': 0.44}, {'connected_gene': 'GC12M052157', 'score': 0.44}, {'connected_gene': 'LOC105369771', 'score': 0.29}]