PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000449193	[[21802406, 21808587], [21810317, 21810409], [21812611, 21812800], [21814475, 21814611]]	[[21804024, 21806751]]
ENST00000444772	[[21803944, 21805845], [21806082, 21806848]]	[[21804024, 21805845], [21806082, 21806751]]
ENST00000487107	[[21808436, 21808587], [21810317, 21810409], [21812611, 21812824]]	None
NM_207371	[[21802406, 21808587], [21810317, 21810409], [21812611, 21812800], [21814475, 21814611]]	[[21804024, 21806751]]

Promoter

Chrom	Start	End	Description
chr10	21805816	21805830	CAGE_peak_2_at_C10orf140_5end
chr10	21806285	21806307	CAGE_peak_3_at_C10orf140_5end
chr10	21806759	21806763	CAGE_peak_7_at_C10orf140_5end
chr10	21807175	21807210	CAGE_peak_1_at_C10orf140_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I021723	21723430	21725772	1.23	[{'connected_gene': 'MLLT10', 'score': 46.65}, {'connected_gene': 'BMI1', 'score': 28.29}, {'connected_gene': 'MIR1915', 'score': 12.37}, {'connected_gene': 'CASC10', 'score': 12.37}, {'connected_gene': 'RNU6-1141P', 'score': 10.77}, {'connected_gene': 'SKIDA1', 'score': 10.17}, {'connected_gene': 'ENSG00000261671', 'score': 9.71}, {'connected_gene': 'GC10P021711', 'score': 0.39}, {'connected_gene': 'RN7SKP219', 'score': 0.21}]
chr10	GH10I021522	21522677	21530071	2.54	[{'connected_gene': 'MLLT10', 'score': 565.97}, {'connected_gene': 'SKIDA1', 'score': 560.85}, {'connected_gene': 'BMI1', 'score': 21.36}, {'connected_gene': 'MIR1915', 'score': 11.42}, {'connected_gene': 'CASC10', 'score': 11.42}]
chr10	GH10I021530	21530905	21536250	2.29	[{'connected_gene': 'MLLT10', 'score': 583.8}, {'connected_gene': 'SKIDA1', 'score': 0.44}, {'connected_gene': 'RNU6-306P', 'score': 0.29}, {'connected_gene': 'GC10M021565', 'score': 0.29}]
chr10	GH10I021514	21514732	21514881	0.63	[{'connected_gene': 'MLLT10', 'score': 0.44}, {'connected_gene': 'SKIDA1', 'score': 0.39}, {'connected_gene': 'GC10P021497', 'score': 0.37}]
chr10	GH10I021507	21507272	21513084	1.48	[{'connected_gene': 'MLLT10', 'score': 20.62}, {'connected_gene': 'C10orf113', 'score': 1.42}, {'connected_gene': 'GC10P021497', 'score': 0.39}, {'connected_gene': 'SKIDA1', 'score': 0.37}]
chr10	GH10I022001	22001920	22004680	2.05	[{'connected_gene': 'DNAJC1', 'score': 550.77}, {'connected_gene': 'BMI1', 'score': 21.39}, {'connected_gene': 'MLLT10', 'score': 12.01}, {'connected_gene': 'SKIDA1', 'score': 10.13}, {'connected_gene': 'GC10M021938', 'score': 0.29}, {'connected_gene': 'GC10P021805', 'score': 0.08}]
chr10	GH10I021515	21515071	21521404	2.34	[{'connected_gene': 'CASC10', 'score': 14.72}, {'connected_gene': 'MIR1915', 'score': 12.09}, {'connected_gene': 'MLLT10', 'score': 5.45}, {'connected_gene': 'SKIDA1', 'score': 1.85}, {'connected_gene': 'GC10P021497', 'score': 0.34}]
chr10	GH10I021500	21499598	21501513	0.77	[{'connected_gene': 'SKIDA1', 'score': 11.68}, {'connected_gene': 'MLLT10', 'score': 11.58}, {'connected_gene': 'GC10P021497', 'score': 0.77}]
chr10	GH10I021513	21513601	21513800	0.51	[{'connected_gene': 'SKIDA1', 'score': 0.39}, {'connected_gene': 'MLLT10', 'score': 0.39}, {'connected_gene': 'GC10P021497', 'score': 0.37}]
chr10	GH10I021505	21505336	21506524	1.14	[{'connected_gene': 'SKIDA1', 'score': 11.71}, {'connected_gene': 'GC10P021497', 'score': 0.44}, {'connected_gene': 'MLLT10', 'score': 0.37}]
chr10	GH10I021581	21581251	21582645	0.71	[{'connected_gene': 'LOC100422524', 'score': 550.77}, {'connected_gene': 'RNU6-1141P', 'score': 11.99}, {'connected_gene': 'MLLT10', 'score': 11.64}, {'connected_gene': 'CASC10', 'score': 11.08}, {'connected_gene': 'MIR1915', 'score': 11.07}, {'connected_gene': 'SKIDA1', 'score': 11.06}, {'connected_gene': 'GC10M021624', 'score': 0.26}]
chr10	GH10I021395	21395036	21395068	0.56	[{'connected_gene': 'LOC100420467', 'score': 550.77}, {'connected_gene': 'RNMTL1P1', 'score': 550.77}, {'connected_gene': 'SKIDA1', 'score': 1.34}, {'connected_gene': 'LOC105376445', 'score': 0.37}]
chr10	GH10I022228	22228189	22231199	1.56	[{'connected_gene': 'PIR53259', 'score': 550.77}, {'connected_gene': 'TRN-GTT2-3', 'score': 550.77}, {'connected_gene': 'MLLT10', 'score': 52.06}, {'connected_gene': 'BMI1', 'score': 44.34}, {'connected_gene': 'COMMD3', 'score': 11.74}, {'connected_gene': 'SKIDA1', 'score': 10.11}, {'connected_gene': 'DNAJC1', 'score': 9.97}, {'connected_gene': 'EBLN1', 'score': 2.65}, {'connected_gene': 'LOC105376446', 'score': 0.37}]