PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000409977	[[93551397, 93553778], [93553908, 93554049], [93554162, 93554489], [93583577, 93583697]]	[[93553734, 93553778], [93553908, 93554049], [93554162, 93554489], [93583577, 93583668]]
ENST00000398221	[[93551972, 93552018], [93553452, 93553778], [93553908, 93553925]]	[[93553734, 93553778], [93553908, 93553925]]
ENST00000414919	[[93553729, 93554049], [93554162, 93555239]]	None
NM_001144871	[[93553734, 93553778], [93553908, 93554049], [93554162, 93554489], [93583577, 93583668]]	[[93553734, 93553778], [93553908, 93554049], [93554162, 93554489], [93583577, 93583668]]

Promoter

Chrom	Start	End	Description
chr11	93583726	93583807	CAGE_peak_1_at_VSTM5_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I093818	93818055	93818204	0.2	[{'connected_gene': 'VSTM5', 'score': 12.02}, {'connected_gene': 'MED17', 'score': 10.75}, {'connected_gene': 'TAF1D', 'score': 10.75}, {'connected_gene': 'GC11P093828', 'score': 0.44}, {'connected_gene': 'GC11P093800', 'score': 0.37}]
chr11	GH11I093849	93849300	93850844	1.64	[{'connected_gene': 'VSTM5', 'score': 559.18}, {'connected_gene': 'PANX1', 'score': 6.12}, {'connected_gene': 'ENSG00000206911', 'score': 0.34}]
chr11	GH11I093842	93842555	93842704	0.68	[{'connected_gene': 'VSTM5', 'score': 0.44}, {'connected_gene': 'ENSG00000206911', 'score': 0.37}]
chr11	GH11I093814	93814283	93816201	0.31	[{'connected_gene': 'C11orf54', 'score': 13.93}, {'connected_gene': 'VSTM5', 'score': 12.01}, {'connected_gene': 'MED17', 'score': 10.79}, {'connected_gene': 'TAF1D', 'score': 10.79}, {'connected_gene': 'GC11P093800', 'score': 0.39}, {'connected_gene': 'GC11P093828', 'score': 0.39}]
chr11	GH11I093817	93817219	93817988	0.2	[{'connected_gene': 'C11orf54', 'score': 42.91}, {'connected_gene': 'VSTM5', 'score': 12.02}, {'connected_gene': 'MED17', 'score': 10.75}, {'connected_gene': 'TAF1D', 'score': 10.75}, {'connected_gene': 'GC11P093828', 'score': 0.39}, {'connected_gene': 'GC11P093800', 'score': 0.37}]
chr11	GH11I093819	93819895	93820710	0.38	[{'connected_gene': 'GC11P093828', 'score': 0.44}, {'connected_gene': 'GC11P093800', 'score': 0.37}, {'connected_gene': 'VSTM5', 'score': 0.29}]
chr11	GH11I093820	93820941	93822507	0.69	[{'connected_gene': 'GC11P093828', 'score': 0.44}, {'connected_gene': 'GC11P093800', 'score': 0.34}, {'connected_gene': 'VSTM5', 'score': 0.31}]