PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000360945	[[58862633, 58862811], [58863015, 58863059], [58869397, 58869479], [58874043, 58874186], [58875246, 58875419]]	[[58862675, 58862811], [58863015, 58863059], [58869397, 58869479], [58874043, 58874186], [58875246, 58875300]]
ENST00000557754	[[58862645, 58862811], [58863015, 58863059], [58874043, 58874186], [58875246, 58875331]]	[[58862675, 58862811], [58863015, 58863059], [58874043, 58874088]]
NM_207377	[[58862643, 58862811], [58863015, 58863059], [58869397, 58869479], [58874043, 58874186], [58875246, 58875419]]	[[58862675, 58862811], [58863015, 58863059], [58869397, 58869479], [58874043, 58874186], [58875246, 58875300]]

Promoter

Chrom	Start	End	Description
chr14	58862501	58862511	CAGE_peak_3_at_TOMM20L_5end
chr14	58862630	58862662	CAGE_peak_1_at_TOMM20L_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr14	GH14I058280	58280564	58282943	1.56	[{'connected_gene': 'ACTR10', 'score': 22.62}, {'connected_gene': 'TOMM20L', 'score': 10.84}, {'connected_gene': 'ENSG00000258682', 'score': 8.7}, {'connected_gene': 'ARID4A', 'score': 5.8}, {'connected_gene': 'HMGB1P14', 'score': 0.77}, {'connected_gene': 'PIR55001', 'score': 0.39}, {'connected_gene': 'C14orf37', 'score': 0.37}, {'connected_gene': 'PSMA3-AS1', 'score': 0.37}]
chr14	GH14I058445	58445193	58445371	0.25	[{'connected_gene': 'TOMM20L', 'score': 10.67}, {'connected_gene': 'KIAA0586', 'score': 1.62}, {'connected_gene': 'ENSG00000252198', 'score': 0.77}, {'connected_gene': 'HSBP1P1', 'score': 0.37}, {'connected_gene': 'GC14P058345', 'score': 0.15}]
chr14	GH14I058104	58104883	58105032	0.75	[{'connected_gene': 'TOMM20L', 'score': 20.1}, {'connected_gene': 'ENSG00000259969', 'score': 11.88}, {'connected_gene': 'SLC35F4', 'score': 11.36}, {'connected_gene': 'RPL31P4', 'score': 10.08}, {'connected_gene': 'LOC440181', 'score': 9.8}, {'connected_gene': 'GC14M058071', 'score': 0.77}, {'connected_gene': 'GC14P058110', 'score': 0.44}, {'connected_gene': 'C14orf37', 'score': 0.08}]
chr14	GH14I058455	58455261	58456529	0.66	[{'connected_gene': 'TOMM20L', 'score': 10.62}, {'connected_gene': 'HSBP1P1', 'score': 0.44}, {'connected_gene': 'ENSG00000252198', 'score': 0.39}, {'connected_gene': 'KIAA0586', 'score': 0.31}, {'connected_gene': 'GC14P058345', 'score': 0.14}]
chr14	GH14I058274	58274508	58276383	0.51	[{'connected_gene': 'TOMM20L', 'score': 11.15}, {'connected_gene': 'ENSG00000258682', 'score': 7.76}, {'connected_gene': 'PIR55001', 'score': 0.77}, {'connected_gene': 'HMGB1P14', 'score': 0.44}, {'connected_gene': 'C14orf37', 'score': 0.34}, {'connected_gene': 'PSMA3-AS1', 'score': 0.34}]
chr14	GH14I058372	58372509	58372884	0.4	[{'connected_gene': 'TOMM20L', 'score': 12.36}, {'connected_gene': 'LOC105370522', 'score': 0.34}, {'connected_gene': 'GC14P058345', 'score': 0.31}, {'connected_gene': 'ARID4A', 'score': 0.19}]
chr14	GH14I058352	58352595	58354283	0.4	[{'connected_gene': 'TOMM20L', 'score': 11.51}, {'connected_gene': 'GC14P058345', 'score': 0.44}, {'connected_gene': 'LOC105370522', 'score': 0.26}, {'connected_gene': 'ARID4A', 'score': 0.22}]
chr14	GH14I058395	58395068	58396823	1.9	[{'connected_gene': 'TOMM20L', 'score': 550.77}, {'connected_gene': 'LOC105370522', 'score': 550.77}, {'connected_gene': 'ENSG00000258378', 'score': 0.77}, {'connected_gene': 'GC14P058345', 'score': 0.23}]
chr14	GH14I058329	58329987	58331933	0.94	[{'connected_gene': 'PSMA3-AS1', 'score': 29.72}, {'connected_gene': 'ENSG00000258682', 'score': 14.86}, {'connected_gene': 'ARID4A', 'score': 10.48}, {'connected_gene': 'TOMM20L', 'score': 10.11}, {'connected_gene': 'GC14P058345', 'score': 0.39}]
chr14	GH14I058296	58296200	58300650	2.53	[{'connected_gene': 'PSMA3-AS1', 'score': 570.55}, {'connected_gene': 'ARID4A', 'score': 557.25}, {'connected_gene': 'C14orf37', 'score': 550.77}, {'connected_gene': 'KIAA0586', 'score': 25.08}, {'connected_gene': 'ENSG00000258682', 'score': 24.68}, {'connected_gene': 'TIMM9', 'score': 13.82}, {'connected_gene': 'TOMM20L', 'score': 10.77}, {'connected_gene': 'ACTR10', 'score': 6.46}, {'connected_gene': 'GC14P058345', 'score': 0.25}]
chr14	GH14I058260	58260120	58260720	0.24	[{'connected_gene': 'RNU6-341P', 'score': 11.7}, {'connected_gene': 'TOMM20L', 'score': 10.32}, {'connected_gene': 'ENSG00000258682', 'score': 0.77}, {'connected_gene': 'PSMA3', 'score': 0.37}, {'connected_gene': 'C14orf37', 'score': 0.28}]