PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000580787	[[10602331, 10602584], [10626586, 10626646], [10628327, 10628451]]	[[10602508, 10602584], [10626586, 10626646], [10628327, 10628451]]
ENST00000341871	[[10616611, 10618905], [10626586, 10626646], [10628327, 10628451], [10629520, 10629581], [10632347, 10632377], [10633096, 10633633]]	[[10618769, 10618905], [10626586, 10626646], [10628327, 10628451], [10629520, 10629581], [10632347, 10632377], [10633096, 10633168]]
ENST00000455996	[[10617992, 10618905], [10626586, 10626646], [10628327, 10628451], [10629520, 10629581], [10633096, 10633340]]	[[10618769, 10618905], [10626586, 10626646], [10628327, 10628451], [10629520, 10629581], [10633096, 10633168]]
ENST00000578345	[[10618738, 10618905], [10628327, 10628451], [10629520, 10629581], [10633096, 10633303]]	[[10618769, 10618905], [10628327, 10628451], [10629520, 10629581], [10633096, 10633168]]
ENST00000580186	[[10618742, 10618905], [10626586, 10626646], [10628327, 10628451], [10629520, 10629682]]	None
ENST00000581949	[[10618746, 10618905], [10626586, 10626646], [10627771, 10627819], [10628327, 10628436]]	[[10618769, 10618905], [10626586, 10626646], [10627771, 10627819], [10628327, 10628436]]
NM_001330139	[[10616611, 10618905], [10626586, 10626646], [10628327, 10628451], [10629520, 10629581], [10633096, 10633646]]	[[10618769, 10618905], [10626586, 10626646], [10628327, 10628451], [10629520, 10629581], [10633096, 10633168]]
NM_001330140	[[10616611, 10618905], [10628327, 10628451], [10629520, 10629581], [10633096, 10633646]]	[[10618769, 10618905], [10628327, 10628451], [10629520, 10629581], [10633096, 10633168]]
NM_001004313	[[10616638, 10618905], [10626586, 10626646], [10628327, 10628451], [10629520, 10629581], [10632347, 10632377], [10633096, 10633646]]	[[10618769, 10618905], [10626586, 10626646], [10628327, 10628451], [10629520, 10629581], [10632347, 10632377], [10633096, 10633168]]

Promoter

Chrom	Start	End	Description
chr17	10633174	10633199	CAGE_peak_3_at_TMEM220_5end
chr17	10633291	10633354	CAGE_peak_1_at_TMEM220_5end
chr17	10633535	10633539	CAGE_peak_2_at_TMEM220_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr17	GH17I010838	10838435	10838494	0.5	[{'connected_gene': 'PIRT', 'score': 550.77}, {'connected_gene': 'TMEM220', 'score': 4.79}, {'connected_gene': 'GC17P010841', 'score': 0.77}]
chr17	GH17I010836	10836780	10837993	0.4	[{'connected_gene': 'PIRT', 'score': 556.31}, {'connected_gene': 'TMEM220', 'score': 4.83}, {'connected_gene': 'GC17M010823', 'score': 0.39}]
chr17	GH17I010695	10695368	10701109	2.03	[{'connected_gene': 'ADPRM', 'score': 601.91}, {'connected_gene': 'SCO1', 'score': 550.77}, {'connected_gene': 'ENSG00000261433', 'score': 10.83}, {'connected_gene': 'MYH3', 'score': 6.46}, {'connected_gene': 'TMEM220', 'score': 0.29}]
chr17	GH17I010743	10743764	10743913	0.43	[{'connected_gene': 'ADPRM', 'score': 11.29}, {'connected_gene': 'SCO1', 'score': 11.29}, {'connected_gene': 'MYH3', 'score': 10.85}, {'connected_gene': 'ENSG00000240813', 'score': 0.77}, {'connected_gene': 'TMEM220-AS1', 'score': 0.39}, {'connected_gene': 'TMEM220', 'score': 0.39}, {'connected_gene': 'ENSG00000264016', 'score': 0.31}]
chr17	GH17I010744	10743382	10743715	0.43	[{'connected_gene': 'ADPRM', 'score': 11.29}, {'connected_gene': 'SCO1', 'score': 11.29}, {'connected_gene': 'MYH3', 'score': 10.85}, {'connected_gene': 'ENSG00000264016', 'score': 4.71}, {'connected_gene': 'ENSG00000240813', 'score': 0.77}, {'connected_gene': 'TMEM220-AS1', 'score': 0.39}, {'connected_gene': 'TMEM220', 'score': 0.39}]
chr17	GH17I010719	10719428	10720898	0.2	[{'connected_gene': 'ADPRM', 'score': 37.54}, {'connected_gene': 'MYH3', 'score': 10.65}, {'connected_gene': 'TMEM220', 'score': 8.4}, {'connected_gene': 'MAGOH2P', 'score': 0.77}, {'connected_gene': 'TMEM220-AS1', 'score': 0.44}]
chr17	GH17I010718	10718110	10719174	0.66	[{'connected_gene': 'ADPRM', 'score': 37.54}, {'connected_gene': 'MYH3', 'score': 10.87}, {'connected_gene': 'MAGOH2P', 'score': 0.77}, {'connected_gene': 'TMEM220-AS1', 'score': 0.39}, {'connected_gene': 'TMEM220', 'score': 0.39}]
chr17	GH17I010732	10732703	10734960	0.4	[{'connected_gene': 'ADPRM', 'score': 43.79}, {'connected_gene': 'TMEM220', 'score': 37.84}, {'connected_gene': 'SCO1', 'score': 11.96}, {'connected_gene': 'MYH3', 'score': 10.82}, {'connected_gene': 'TMEM220-AS1', 'score': 0.77}, {'connected_gene': 'ENSG00000240813', 'score': 0.39}]
chr17	GH17I010723	10723882	10727866	0.96	[{'connected_gene': 'ADPRM', 'score': 39.58}, {'connected_gene': 'TMEM220', 'score': 18.99}, {'connected_gene': 'MYH3', 'score': 10.63}, {'connected_gene': 'TMEM220-AS1', 'score': 0.77}, {'connected_gene': 'MAGOH2P', 'score': 0.44}]
chr17	GH17I010784	10784511	10787934	0.66	[{'connected_gene': 'ADPRM', 'score': 24.25}, {'connected_gene': 'RNU6-1065P', 'score': 11.31}, {'connected_gene': 'RPL15P21', 'score': 11.3}, {'connected_gene': 'MYH3', 'score': 10.58}, {'connected_gene': 'SCO1', 'score': 10.57}, {'connected_gene': 'TMEM220', 'score': 6.75}, {'connected_gene': 'TMEM220-AS1', 'score': 6.58}, {'connected_gene': 'GC17M010779', 'score': 0.44}, {'connected_gene': 'ENSG00000266114', 'score': 0.44}]
chr17	GH17I010755	10755004	10758648	1.26	[{'connected_gene': 'ADPRM', 'score': 30.59}, {'connected_gene': 'TMEM220-AS1', 'score': 6.43}, {'connected_gene': 'ENSG00000264016', 'score': 6.04}, {'connected_gene': 'TMEM220', 'score': 2.83}, {'connected_gene': 'PIRT', 'score': 2.07}, {'connected_gene': 'SHISA6', 'score': 1.81}, {'connected_gene': 'GC17M010753', 'score': 0.77}, {'connected_gene': 'ENSG00000240813', 'score': 0.39}]
chr17	GH17I010702	10702544	10703041	0.31	[{'connected_gene': 'TMEM220', 'score': 4.77}, {'connected_gene': 'SCO1', 'score': 0.77}, {'connected_gene': 'ADPRM', 'score': 0.44}, {'connected_gene': 'PIR53353', 'score': 0.44}]
chr17	GH17I010663	10663926	10665264	0.2	[{'connected_gene': 'TMEM220', 'score': 5.5}, {'connected_gene': 'ENSG00000261433', 'score': 0.44}, {'connected_gene': 'MYH3', 'score': 0.39}]
chr17	GH17I010668	10668412	10669648	0.58	[{'connected_gene': 'TMEM220', 'score': 5.43}, {'connected_gene': 'ENSG00000261433', 'score': 0.44}, {'connected_gene': 'MYH3', 'score': 0.39}]
chr17	GH17I010736	10736488	10740228	1.03	[{'connected_gene': 'TMEM220', 'score': 11.77}, {'connected_gene': 'RNU6-1065P', 'score': 11.68}, {'connected_gene': 'RPL15P21', 'score': 11.67}, {'connected_gene': 'SCO1', 'score': 11.55}, {'connected_gene': 'ADPRM', 'score': 11.53}, {'connected_gene': 'MYH3', 'score': 10.56}, {'connected_gene': 'TMEM220-AS1', 'score': 5.72}, {'connected_gene': 'ENSG00000264016', 'score': 4.88}, {'connected_gene': 'ENSG00000240813', 'score': 0.44}]
chr17	GH17I010728	10728358	10731951	2.04	[{'connected_gene': 'TMEM220', 'score': 589.38}, {'connected_gene': 'TMEM220-AS1', 'score': 555.28}, {'connected_gene': 'ADPRM', 'score': 47.08}, {'connected_gene': 'ENSG00000261433', 'score': 11.36}, {'connected_gene': 'MAGOH2P', 'score': 11.29}]
chr17	GH17I010715	10715948	10717410	0.8	[{'connected_gene': 'MAGOH2P', 'score': 550.77}, {'connected_gene': 'ADPRM', 'score': 38.13}, {'connected_gene': 'TMEM220-AS1', 'score': 0.39}, {'connected_gene': 'TMEM220', 'score': 0.39}]
chr17	GH17I010745	10744240	10746067	0.83	[{'connected_gene': 'ENSG00000240813', 'score': 550.77}, {'connected_gene': 'ADPRM', 'score': 11.29}, {'connected_gene': 'SCO1', 'score': 11.29}, {'connected_gene': 'MYH3', 'score': 10.9}, {'connected_gene': 'ENSG00000264016', 'score': 4.85}, {'connected_gene': 'TMEM220-AS1', 'score': 4.76}, {'connected_gene': 'TMEM220', 'score': 0.39}]