PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000335790	[[8245850, 8246268], [8248521, 8248647], [8251837, 8252051], [8284884, 8285405]]	[[8246162, 8246268], [8248521, 8248647], [8251837, 8252051], [8284884, 8284909]]
ENST00000428101	[[8245860, 8246268], [8248521, 8248647], [8251837, 8252051], [8289973, 8290263]]	[[8246162, 8246268], [8248521, 8248647], [8251837, 8252051], [8289973, 8289995]]
ENST00000524379	[[8245995, 8246268], [8248400, 8248647], [8251837, 8252051], [8284884, 8284935]]	None
ENST00000534484	[[8246025, 8246268], [8248521, 8248647], [8251837, 8252051], [8285218, 8285405]]	[[8246162, 8246268], [8248521, 8248647], [8251837, 8252043]]
NR_073006	[[8245850, 8246268], [8248400, 8248647], [8251837, 8252051], [8284884, 8285425]]	None
NM_002315	[[8245850, 8246268], [8248521, 8248647], [8251837, 8252051], [8284884, 8285425]]	[[8246162, 8246268], [8248521, 8248647], [8251837, 8252051], [8284884, 8284909]]
NM_001270428	[[8245850, 8246268], [8248521, 8248647], [8251837, 8252051], [8289973, 8290182]]	[[8246162, 8246268], [8248521, 8248647], [8251837, 8252051], [8289973, 8289995]]

Promoter

Chrom	Start	End	Description
chr11	8285219	8285232	CAGE_peak_8_at_LMO1_5end
chr11	8285422	8285426	CAGE_peak_2_at_LMO1_5end
chr11	8290319	8290340	CAGE_peak_1_at_LMO1_5end
chr11	8290343	8290354	CAGE_peak_4_at_LMO1_5end
chr11	8290633	8290665	CAGE_peak_11_at_LMO1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I008262	8262334	8263761	1.9	[{'connected_gene': 'LMO1', 'score': 550.44}, {'connected_gene': 'TRIM66', 'score': 4.23}, {'connected_gene': 'GC11P008258', 'score': 0.77}, {'connected_gene': 'GC11P008268', 'score': 0.44}]
chr11	GH11I008231	8231774	8235205	1.11	[{'connected_gene': 'LMO1', 'score': 5.53}, {'connected_gene': 'LOC105376536', 'score': 0.77}, {'connected_gene': 'GC11P008258', 'score': 0.31}]
chr11	GH11I008263	8263868	8264043	1.38	[{'connected_gene': 'LMO1', 'score': 550.77}, {'connected_gene': 'GC11P008268', 'score': 0.77}, {'connected_gene': 'GC11P008258', 'score': 0.44}]
chr11	GH11I008229	8229394	8229635	1.32	[{'connected_gene': 'LOC105376536', 'score': 550.77}, {'connected_gene': 'STK33', 'score': 3.68}, {'connected_gene': 'TRIM66', 'score': 1.55}, {'connected_gene': 'GC11M008226', 'score': 0.77}, {'connected_gene': 'LMO1', 'score': 0.28}]
chr11	GH11I008237	8237011	8237980	0.2	[{'connected_gene': 'LOC105376536', 'score': 0.44}, {'connected_gene': 'GC11P008258', 'score': 0.34}, {'connected_gene': 'LMO1', 'score': 0.29}]
chr11	GH11I008241	8241853	8243393	0.63	[{'connected_gene': 'LOC101927936', 'score': 10.0}, {'connected_gene': 'RIC3', 'score': 10.0}, {'connected_gene': 'LOC105376536', 'score': 0.39}, {'connected_gene': 'GC11P008258', 'score': 0.37}, {'connected_gene': 'LMO1', 'score': 0.31}]
chr11	GH11I008258	8258066	8259483	0.8	[{'connected_gene': 'GC11P008258', 'score': 550.77}, {'connected_gene': 'LMO1', 'score': 5.0}, {'connected_gene': 'LOC105376536', 'score': 0.31}]
chr11	GH11I008250	8250813	8251924	0.49	[{'connected_gene': 'GC11P008258', 'score': 0.44}, {'connected_gene': 'LMO1', 'score': 0.37}, {'connected_gene': 'LOC105376536', 'score': 0.34}]
chr11	GH11I008252	8252257	8252606	0.45	[{'connected_gene': 'GC11P008258', 'score': 0.44}, {'connected_gene': 'LMO1', 'score': 0.37}, {'connected_gene': 'LOC105376536', 'score': 0.34}]
chr11	GH11I008255	8255907	8257097	0.2	[{'connected_gene': 'GC11P008258', 'score': 0.77}, {'connected_gene': 'LMO1', 'score': 0.39}, {'connected_gene': 'LOC105376536', 'score': 0.31}]
chr11	GH11I008253	8253590	8254788	0.8	[{'connected_gene': 'GC11P008258', 'score': 0.77}, {'connected_gene': 'LMO1', 'score': 0.39}, {'connected_gene': 'LOC105376536', 'score': 0.34}]
chr11	GH11I008265	8265210	8266577	0.31	[{'connected_gene': 'GC11P008268', 'score': 0.77}, {'connected_gene': 'LMO1', 'score': 0.77}, {'connected_gene': 'GC11P008258', 'score': 0.44}]
chr11	GH11I008283	8283084	8284241	0.94	[{'connected_gene': 'GC11M008295', 'score': 0.39}, {'connected_gene': 'LMO1', 'score': 0.39}]
chr11	GH11I008268	8268777	8268836	0.93	[{'connected_gene': 'GC11P008268', 'score': 550.77}, {'connected_gene': 'LMO1', 'score': 550.77}, {'connected_gene': 'GC11M008295', 'score': 0.31}]
chr11	GH11I008225	8225674	8226001	1.08	[{'connected_gene': 'GC11M008226', 'score': 550.77}, {'connected_gene': 'GC11P008211', 'score': 0.37}, {'connected_gene': 'LMO1', 'score': 0.26}]
chr11	GH11I008227	8227060	8228318	0.85	[{'connected_gene': 'GC11M008226', 'score': 550.77}, {'connected_gene': 'LOC105376536', 'score': 0.77}, {'connected_gene': 'LMO1', 'score': 0.26}]