Visualization of regulatory element with DNMs in transcripts



Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.

Transcripts
Transcript ID Transcript exon region Coding exon region
ENST00000575284 [[4634722, 4634869], [4635070, 4635201], [4636233, 4636607]] [[4634784, 4634869], [4635070, 4635201], [4636233, 4636275]]
ENST00000573708 [[4634725, 4634869], [4635070, 4635728]] [[4634784, 4634869], [4635070, 4635267]]
ENST00000293777 [[4634728, 4634869], [4635070, 4635201], [4636344, 4636905]] [[4634784, 4634869], [4635070, 4635201], [4636344, 4636482]]
NM_001001683 [[4634702, 4634869], [4635070, 4635201], [4636344, 4636905]] [[4634784, 4634869], [4635070, 4635201], [4636344, 4636482]]
NM_001305000 [[4634702, 4634869], [4635070, 4635201], [4636233, 4636905]] [[4634784, 4634869], [4635070, 4635201], [4636233, 4636275]]
Promoter
Chrom Start End Description
chr17 4634705 4634736 CAGE_peak_1_at_MED11_5end
chr17 4634752 4634765 CAGE_peak_2_at_MED11_5end

Enhancer
Chrom Start End Genehancer ID Score Attributes
chr17 GH17I004730 4730298 4732315 2.07 [{'connected_gene': 'MED11', 'score': 550.77}, {'connected_gene': 'ENSG00000261898', 'score': 550.77}, {'connected_gene': 'CXCL16', 'score': 18.56}, {'connected_gene': 'LOC101928000', 'score': 6.65}, {'connected_gene': 'GC17M004714', 'score': 0.77}]
chr17 GH17I004724 4724802 4726800 0.76 [{'connected_gene': 'GC17P004725', 'score': 550.77}, {'connected_gene': 'CXCL16', 'score': 21.8}, {'connected_gene': 'MINK1', 'score': 11.02}, {'connected_gene': 'GGT6', 'score': 10.37}, {'connected_gene': 'LOC101928000', 'score': 7.83}, {'connected_gene': 'ZFP3', 'score': 5.73}, {'connected_gene': 'MED11', 'score': 5.07}, {'connected_gene': 'GC17M004721', 'score': 0.77}, {'connected_gene': 'GC17M004714', 'score': 0.77}]
chr17 GH17I004732 4732886 4734083 0.67 [{'connected_gene': 'ENSG00000261898', 'score': 550.77}, {'connected_gene': 'CXCL16', 'score': 18.58}, {'connected_gene': 'MED11', 'score': 0.77}]