PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000470680	[[138666075, 138666306], [138668353, 138668481], [138669106, 138669721]]	[[138666206, 138666306], [138668353, 138668379]]
ENST00000383165	[[138666075, 138666306], [138668361, 138668481], [138669106, 138672293]]	[[138666206, 138666306], [138668361, 138668481], [138669106, 138669414]]
ENST00000498709	[[138666453, 138666849], [138668353, 138669670]]	None
NM_001040061	[[138666075, 138666306], [138668361, 138668481], [138669106, 138672830]]	[[138666206, 138666306], [138668361, 138668481], [138669106, 138669414]]

Promoter

Chrom	Start	End	Description
chr3	138666052	138666066	CAGE_peak_2_at_C3orf72_5end
chr3	138666070	138666100	CAGE_peak_1_at_C3orf72_5end
chr3	138666102	138666138	CAGE_peak_3_at_C3orf72_5end
chr3	138666175	138666186	CAGE_peak_5_at_C3orf72_5end
chr3	138666453	138666470	CAGE_peak_4_at_C3orf72_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I138914	138914602	138917108	1.52	[{'connected_gene': 'CEP70', 'score': 12.25}, {'connected_gene': 'PIK3CB', 'score': 11.52}, {'connected_gene': 'FAIM', 'score': 11.23}, {'connected_gene': 'LINC01391', 'score': 11.21}, {'connected_gene': 'FOXL2NB', 'score': 11.2}, {'connected_gene': 'FOXL2', 'score': 11.2}, {'connected_gene': 'ATP5MC1P3', 'score': 0.31}]
chr3	GH03I138956	138955735	138955938	0.2	[{'connected_gene': 'FAIM', 'score': 9.67}, {'connected_gene': 'FOXL2NB', 'score': 0.44}, {'connected_gene': 'MRPS22', 'score': 0.25}]
chr3	GH03I138955	138955062	138955450	0.2	[{'connected_gene': 'FAIM', 'score': 9.67}, {'connected_gene': 'FOXL2NB', 'score': 0.44}, {'connected_gene': 'MRPS22', 'score': 0.23}]
chr3	GH03I139297	139297238	139304799	1.67	[{'connected_gene': 'FOXL2NB', 'score': 1.91}, {'connected_gene': 'FOXL2', 'score': 1.76}, {'connected_gene': 'PIR46128', 'score': 0.29}, {'connected_gene': 'ENSG00000272656', 'score': 0.25}, {'connected_gene': 'MRPS22', 'score': 0.06}]
chr3	GH03I138952	138952211	138952410	0.31	[{'connected_gene': 'FOXL2NB', 'score': 0.44}, {'connected_gene': 'MRPS22', 'score': 0.23}]
chr3	GH03I138948	138948722	138949648	0.72	[{'connected_gene': 'FOXL2NB', 'score': 550.77}, {'connected_gene': 'MRPS22', 'score': 0.22}]
chr3	GH03I138960	138960299	138960568	0.31	[{'connected_gene': 'FOXL2NB', 'score': 0.39}, {'connected_gene': 'MRPS22', 'score': 0.25}]
chr3	GH03I138950	138950219	138950368	0.63	[{'connected_gene': 'FOXL2NB', 'score': 0.77}, {'connected_gene': 'MRPS22', 'score': 0.22}]
chr3	GH03I138942	138942217	138948361	1.83	[{'connected_gene': 'FOXL2NB', 'score': 550.77}, {'connected_gene': 'LINC01391', 'score': 550.77}, {'connected_gene': 'FOXL2', 'score': 550.77}, {'connected_gene': 'DBR1', 'score': 28.08}, {'connected_gene': 'DZIP1L', 'score': 25.48}, {'connected_gene': 'ENSG00000272656', 'score': 11.16}, {'connected_gene': 'CEP70', 'score': 10.28}, {'connected_gene': 'ACTG1P1', 'score': 9.79}, {'connected_gene': 'COPB2', 'score': 9.67}, {'connected_gene': 'MRAS', 'score': 6.41}]
chr3	GH03I138923	138923539	138923801	0.95	[{'connected_gene': 'LINC01391', 'score': 11.62}, {'connected_gene': 'FOXL2NB', 'score': 11.62}, {'connected_gene': 'FOXL2', 'score': 11.62}, {'connected_gene': 'CEP70', 'score': 11.39}, {'connected_gene': 'FAIM', 'score': 10.89}, {'connected_gene': 'ATP5MC1P3', 'score': 0.29}]