PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000370905	[[53512698, 53517128], [53518898, 53520103], [53530398, 53530506]]	[[53516395, 53517128], [53518898, 53520070]]
ENST00000407079	[[53516395, 53517128], [53518898, 53520070]]	[[53516395, 53517128], [53518898, 53520070]]
NM_001003760	[[53512698, 53517128], [53518898, 53520103], [53530398, 53530506]]	[[53516395, 53517128], [53518898, 53520070]]

Promoter

Chrom	Start	End	Description
chr6	53530474	53530508	CAGE_peak_4_at_KLHL31_5end
chr6	53530518	53530543	CAGE_peak_2_at_KLHL31_5end
chr6	53530546	53530564	CAGE_peak_1_at_KLHL31_5end
chr6	53530573	53530581	CAGE_peak_7_at_KLHL31_5end
chr6	53530582	53530594	CAGE_peak_5_at_KLHL31_5end
chr6	53530600	53530633	CAGE_peak_3_at_KLHL31_5end
chr6	53530653	53530666	CAGE_peak_6_at_KLHL31_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I054162	54162778	54163138	0.34	[{'connected_gene': 'MLIP', 'score': 7.52}, {'connected_gene': 'KLHL31', 'score': 2.06}, {'connected_gene': 'GC06P054160', 'score': 0.77}, {'connected_gene': 'LOC105375097', 'score': 0.31}]
chr6	GH06I053791	53791954	53797782	2.45	[{'connected_gene': 'LRRC1', 'score': 565.12}, {'connected_gene': 'ENSG00000228614', 'score': 550.77}, {'connected_gene': 'KLHL31', 'score': 13.36}, {'connected_gene': 'MLIP-IT1', 'score': 8.51}, {'connected_gene': 'ENSG00000227885', 'score': 4.84}, {'connected_gene': 'PIR32511', 'score': 0.17}]
chr6	GH06I053737	53737182	53738829	0.52	[{'connected_gene': 'LRRC1', 'score': 18.63}, {'connected_gene': 'ENSG00000228614', 'score': 11.57}, {'connected_gene': 'KLHL31', 'score': 10.97}, {'connected_gene': 'MLIP-IT1', 'score': 9.79}, {'connected_gene': 'ENSG00000227885', 'score': 0.44}]
chr6	GH06I053743	53743951	53745282	0.69	[{'connected_gene': 'LRRC1', 'score': 11.6}, {'connected_gene': 'ENSG00000228614', 'score': 11.6}, {'connected_gene': 'ENSG00000227885', 'score': 9.54}, {'connected_gene': 'KLHL31', 'score': 0.18}]
chr6	GH06I053854	53854329	53856024	0.88	[{'connected_gene': 'LRRC1', 'score': 15.97}, {'connected_gene': 'ENSG00000228614', 'score': 11.08}, {'connected_gene': 'MLIP-IT1', 'score': 5.6}, {'connected_gene': 'KLHL31', 'score': 4.3}, {'connected_gene': 'LOC101927189', 'score': 4.28}, {'connected_gene': 'PIR32511', 'score': 0.31}, {'connected_gene': 'GC06M053813', 'score': 0.26}]
chr6	GH06I053664	53664205	53665805	1.13	[{'connected_gene': 'KLHL31', 'score': 556.75}, {'connected_gene': 'GCLC', 'score': 5.41}, {'connected_gene': 'LINC01564', 'score': 0.28}]
chr6	GH06I053679	53679503	53679967	1.06	[{'connected_gene': 'KLHL31', 'score': 6.43}, {'connected_gene': 'GCLC', 'score': 5.5}, {'connected_gene': 'ENSG00000227885', 'score': 0.2}]
chr6	GH06I053492	53492643	53493800	0.97	[{'connected_gene': 'KLHL31', 'score': 10.76}, {'connected_gene': 'GC06M053483', 'score': 0.77}, {'connected_gene': 'GC06P053483', 'score': 0.39}, {'connected_gene': 'LOC105375095', 'score': 0.37}]
chr6	GH06I053690	53690303	53693383	0.31	[{'connected_gene': 'KLHL31', 'score': 11.53}, {'connected_gene': 'LINC01564', 'score': 10.35}, {'connected_gene': 'ENSG00000227885', 'score': 0.22}]
chr6	GH06I053733	53733371	53736353	1.03	[{'connected_gene': 'KLHL31', 'score': 11.03}, {'connected_gene': 'MLIP-IT1', 'score': 9.71}, {'connected_gene': 'LRRC1', 'score': 7.44}, {'connected_gene': 'ENSG00000227885', 'score': 0.39}]
chr6	GH06I053697	53697977	53699359	0.2	[{'connected_gene': 'KLHL31', 'score': 16.6}, {'connected_gene': 'MLIP-IT1', 'score': 7.88}, {'connected_gene': 'ENSG00000227885', 'score': 0.25}]
chr6	GH06I053770	53770255	53771910	0.43	[{'connected_gene': 'KLHL31', 'score': 8.67}, {'connected_gene': 'ENSG00000228614', 'score': 0.34}, {'connected_gene': 'ENSG00000227885', 'score': 0.34}]
chr6	GH06I053728	53728401	53728999	0.84	[{'connected_gene': 'KLHL31', 'score': 4.96}, {'connected_gene': 'ENSG00000227885', 'score': 0.37}]
chr6	GH06I053701	53701763	53701912	0.51	[{'connected_gene': 'KLHL31', 'score': 10.74}, {'connected_gene': 'ENSG00000227885', 'score': 0.25}]
chr6	GH06I053702	53702044	53702660	0.51	[{'connected_gene': 'KLHL31', 'score': 10.74}, {'connected_gene': 'ENSG00000227885', 'score': 0.26}]
chr6	GH06I053725	53725923	53726201	0.96	[{'connected_gene': 'KLHL31', 'score': 4.9}, {'connected_gene': 'ENSG00000227885', 'score': 0.34}]
chr6	GH06I053718	53718523	53719776	0.68	[{'connected_gene': 'KLHL31', 'score': 18.47}, {'connected_gene': 'ENSG00000227885', 'score': 7.39}]
chr6	GH06I053673	53673283	53673452	1.03	[{'connected_gene': 'KLHL31', 'score': 7.36}, {'connected_gene': 'ENSG00000227885', 'score': 0.19}]
chr6	GH06I053650	53650549	53652800	1.45	[{'connected_gene': 'GCLC', 'score': 6.34}, {'connected_gene': 'KLHL31', 'score': 6.05}, {'connected_gene': 'GSTA4', 'score': 4.34}, {'connected_gene': 'LINC01564', 'score': 0.34}]
chr6	GH06I053658	53658359	53660498	0.46	[{'connected_gene': 'GCLC', 'score': 7.26}, {'connected_gene': 'KLHL31', 'score': 6.59}, {'connected_gene': 'LINC01564', 'score': 0.29}]
chr6	GH06I053646	53646988	53648295	0.99	[{'connected_gene': 'GCLC', 'score': 8.83}, {'connected_gene': 'LINC01564', 'score': 0.37}, {'connected_gene': 'KLHL31', 'score': 0.37}]
chr6	GH06I053685	53685743	53688036	0.83	[{'connected_gene': 'LOC105375095', 'score': 10.4}, {'connected_gene': 'GSTA4', 'score': 9.91}, {'connected_gene': 'KLHL31', 'score': 0.34}, {'connected_gene': 'ENSG00000227885', 'score': 0.21}]
chr6	GH06I053812	53812642	53815207	0.59	[{'connected_gene': 'LOC101927189', 'score': 17.68}, {'connected_gene': 'MLIP', 'score': 10.62}, {'connected_gene': 'LRRC1', 'score': 8.62}, {'connected_gene': 'KLHL31', 'score': 5.3}, {'connected_gene': 'PIR32511', 'score': 0.19}, {'connected_gene': 'GC06M053813', 'score': 0.18}]
chr6	GH06I053825	53825226	53830819	1.12	[{'connected_gene': 'LOC101927189', 'score': 16.28}, {'connected_gene': 'MLIP-IT1', 'score': 11.16}, {'connected_gene': 'MLIP', 'score': 10.66}, {'connected_gene': 'LRRC1', 'score': 8.51}, {'connected_gene': 'KLHL31', 'score': 7.66}, {'connected_gene': 'PIR32511', 'score': 0.22}, {'connected_gene': 'GC06M053813', 'score': 0.19}]
chr6	GH06I053635	53635463	53635612	0.58	[{'connected_gene': 'LINC01564', 'score': 0.44}, {'connected_gene': 'KLHL31', 'score': 0.29}]
chr6	GH06I053627	53627115	53630054	1.25	[{'connected_gene': 'LINC01564', 'score': 564.43}, {'connected_gene': 'KLHL31', 'score': 0.28}]
chr6	GH06I053740	53740993	53742185	0.63	[{'connected_gene': 'MLIP-IT1', 'score': 9.69}, {'connected_gene': 'LRRC1', 'score': 7.41}, {'connected_gene': 'KLHL31', 'score': 7.16}, {'connected_gene': 'ENSG00000227885', 'score': 4.59}]
chr6	GH06I053722	53722477	53725538	0.6	[{'connected_gene': 'MLIP-IT1', 'score': 9.1}, {'connected_gene': 'KLHL31', 'score': 8.42}, {'connected_gene': 'ENSG00000227885', 'score': 5.88}, {'connected_gene': 'LRRC1', 'score': 4.49}]
chr6	GH06I053751	53751884	53753978	0.56	[{'connected_gene': 'MLIP-IT1', 'score': 10.29}, {'connected_gene': 'ENSG00000227885', 'score': 9.04}, {'connected_gene': 'KLHL31', 'score': 8.59}, {'connected_gene': 'LRRC1', 'score': 8.0}, {'connected_gene': 'ENSG00000228614', 'score': 0.26}]
chr6	GH06I053861	53861404	53865128	0.66	[{'connected_gene': 'MLIP-IT1', 'score': 11.92}, {'connected_gene': 'LOC101927189', 'score': 5.36}, {'connected_gene': 'KLHL31', 'score': 5.29}, {'connected_gene': 'LRRC1', 'score': 4.64}, {'connected_gene': 'PIR32511', 'score': 0.34}, {'connected_gene': 'GC06M053813', 'score': 0.28}]
chr6	GH06I053982	53982141	53985138	0.76	[{'connected_gene': 'GC06P053984', 'score': 550.77}, {'connected_gene': 'MLIP', 'score': 23.12}, {'connected_gene': 'MLIP-IT1', 'score': 18.0}, {'connected_gene': 'LOC101927189', 'score': 10.78}, {'connected_gene': 'MLIP-AS1', 'score': 10.62}, {'connected_gene': 'KLHL31', 'score': 4.73}, {'connected_gene': 'PIR57668', 'score': 0.26}]
chr6	GH06I053494	53494990	53498012	0.64	[{'connected_gene': 'GC06M053483', 'score': 550.77}, {'connected_gene': 'KLHL31', 'score': 10.77}, {'connected_gene': 'LOC105375095', 'score': 6.79}, {'connected_gene': 'GCLC', 'score': 6.12}, {'connected_gene': 'GC06P053483', 'score': 0.39}]
chr6	GH06I053746	53746421	53747225	0.52	[{'connected_gene': 'ENSG00000227885', 'score': 550.77}, {'connected_gene': 'KLHL31', 'score': 8.6}]
chr6	GH06I053727	53727863	53728012	0.31	[{'connected_gene': 'ENSG00000227885', 'score': 0.37}, {'connected_gene': 'KLHL31', 'score': 0.21}]
chr6	GH06I052877	52877303	52877492	0.6	[{'connected_gene': 'GC06P052876', 'score': 550.77}, {'connected_gene': 'GSTA3', 'score': 11.09}, {'connected_gene': 'KLHL31', 'score': 6.96}, {'connected_gene': 'LOC105375091', 'score': 0.77}, {'connected_gene': 'GSTA10P', 'score': 0.39}]