PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
NM_001291784	[[2514771, 2514951], [2515288, 2515382], [2515384, 2515462], [2515553, 2515633], [2516005, 2516017]]	[[2514771, 2514951], [2515288, 2515382], [2515384, 2515462], [2515553, 2515633], [2516005, 2516017]]

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I002417	2417276	2419104	0.43	[{'connected_gene': 'EIF3B', 'score': 17.7}, {'connected_gene': 'LOC645357', 'score': 12.8}, {'connected_gene': 'TTYH3', 'score': 10.91}, {'connected_gene': 'CHST12', 'score': 9.58}, {'connected_gene': 'GC07P002406', 'score': 0.39}, {'connected_gene': 'GRIFIN', 'score': 0.22}]
chr7	GH07I002408	2408602	2410930	0.99	[{'connected_gene': 'EIF3B', 'score': 17.99}, {'connected_gene': 'CHST12', 'score': 13.16}, {'connected_gene': 'LOC645357', 'score': 13.11}, {'connected_gene': 'BRAT1', 'score': 11.01}, {'connected_gene': 'GC07P002406', 'score': 0.77}, {'connected_gene': 'GRIFIN', 'score': 0.2}]
chr7	GH07I002411	2411597	2413235	1	[{'connected_gene': 'LOC645357', 'score': 13.09}, {'connected_gene': 'EIF3B', 'score': 13.02}, {'connected_gene': 'CHST12', 'score': 11.89}, {'connected_gene': 'BRAT1', 'score': 11.01}, {'connected_gene': 'GC07P002406', 'score': 0.44}, {'connected_gene': 'GRIFIN', 'score': 0.21}]
chr7	GH07I002413	2413546	2413695	0.54	[{'connected_gene': 'LOC645357', 'score': 13.09}, {'connected_gene': 'EIF3B', 'score': 13.02}, {'connected_gene': 'BRAT1', 'score': 11.01}, {'connected_gene': 'GC07P002406', 'score': 0.44}, {'connected_gene': 'CHST12', 'score': 0.39}, {'connected_gene': 'GRIFIN', 'score': 0.21}]
chr7	GH07I002432	2432206	2432215	0.38	[{'connected_gene': 'CHST12', 'score': 13.17}, {'connected_gene': 'LOC645357', 'score': 13.09}, {'connected_gene': 'EIF3B', 'score': 13.04}, {'connected_gene': 'GC07P002406', 'score': 0.31}, {'connected_gene': 'GRIFIN', 'score': 0.26}]
chr7	GH07I002425	2425826	2426081	0.31	[{'connected_gene': 'CHST12', 'score': 13.2}, {'connected_gene': 'LOC645357', 'score': 13.12}, {'connected_gene': 'EIF3B', 'score': 13.05}, {'connected_gene': 'GC07P002406', 'score': 0.37}, {'connected_gene': 'GRIFIN', 'score': 0.23}]
chr7	GH07I002431	2431546	2431755	0.49	[{'connected_gene': 'CHST12', 'score': 13.17}, {'connected_gene': 'LOC645357', 'score': 13.11}, {'connected_gene': 'EIF3B', 'score': 13.04}, {'connected_gene': 'GC07P002406', 'score': 0.31}, {'connected_gene': 'GRIFIN', 'score': 0.25}]
chr7	GH07I002438	2438246	2439160	0.2	[{'connected_gene': 'CHST12', 'score': 21.78}, {'connected_gene': 'LOC645357', 'score': 12.08}, {'connected_gene': 'EIF3B', 'score': 12.04}, {'connected_gene': 'LFNG', 'score': 12.01}, {'connected_gene': 'BRAT1', 'score': 11.12}, {'connected_gene': 'IQCE', 'score': 11.12}, {'connected_gene': 'GC07P002406', 'score': 0.29}, {'connected_gene': 'GRIFIN', 'score': 0.28}]
chr7	GH07I002426	2425446	2425655	0.62	[{'connected_gene': 'CHST12', 'score': 11.74}, {'connected_gene': 'GC07P002406', 'score': 0.37}, {'connected_gene': 'GRIFIN', 'score': 0.23}]
chr7	GH07I002451	2451151	2452975	1.09	[{'connected_gene': 'CHST12', 'score': 12.25}, {'connected_gene': 'BRAT1', 'score': 12.22}, {'connected_gene': 'IQCE', 'score': 12.22}, {'connected_gene': 'LOC645357', 'score': 12.2}, {'connected_gene': 'EIF3B', 'score': 12.16}, {'connected_gene': 'SNX8', 'score': 11.81}, {'connected_gene': 'TTYH3', 'score': 11.76}, {'connected_gene': 'AMZ1', 'score': 11.74}, {'connected_gene': 'LFNG', 'score': 7.44}, {'connected_gene': 'GRIFIN', 'score': 0.34}, {'connected_gene': 'GC07P002406', 'score': 0.25}]
chr7	GH07I002476	2476062	2479527	0.99	[{'connected_gene': 'GRIFIN', 'score': 550.77}, {'connected_gene': 'LFNG', 'score': 5.43}]
chr7	GH07I002469	2469601	2470000	0.52	[{'connected_gene': 'GRIFIN', 'score': 0.44}, {'connected_gene': 'GC07P002406', 'score': 0.21}]
chr7	GH07I002471	2471108	2471937	0.76	[{'connected_gene': 'GRIFIN', 'score': 0.44}, {'connected_gene': 'GC07P002406', 'score': 0.2}]
chr7	GH07I002468	2468986	2469135	0.72	[{'connected_gene': 'GRIFIN', 'score': 0.44}, {'connected_gene': 'GC07P002406', 'score': 0.21}]
chr7	GH07I002458	2458200	2458315	0.52	[{'connected_gene': 'GRIFIN', 'score': 0.37}, {'connected_gene': 'GC07P002406', 'score': 0.23}]
chr7	GH07I002489	2489500	2490778	0.2	[{'connected_gene': 'LFNG', 'score': 22.74}, {'connected_gene': 'TTYH3', 'score': 11.76}, {'connected_gene': 'AMZ1', 'score': 11.17}, {'connected_gene': 'GRIFIN', 'score': 0.39}]
chr7	GH07I002487	2487498	2489041	0.66	[{'connected_gene': 'LFNG', 'score': 22.91}, {'connected_gene': 'TTYH3', 'score': 11.76}, {'connected_gene': 'AMZ1', 'score': 11.67}, {'connected_gene': 'BRAT1', 'score': 11.31}, {'connected_gene': 'GRIFIN', 'score': 0.39}]
chr7	GH07I002497	2497148	2500889	0.43	[{'connected_gene': 'LFNG', 'score': 7.59}, {'connected_gene': 'NUDT1', 'score': 7.21}, {'connected_gene': 'GRIFIN', 'score': 0.34}]
chr7	GH07I002439	2439975	2442122	0.75	[{'connected_gene': 'LFNG', 'score': 12.01}, {'connected_gene': 'BRAT1', 'score': 10.87}, {'connected_gene': 'GC07P002406', 'score': 0.29}, {'connected_gene': 'CHST12', 'score': 0.28}, {'connected_gene': 'GRIFIN', 'score': 0.28}]
chr7	GH07I002444	2444606	2444755	0.2	[{'connected_gene': 'LFNG', 'score': 12.02}, {'connected_gene': 'BRAT1', 'score': 10.87}, {'connected_gene': 'GRIFIN', 'score': 0.29}, {'connected_gene': 'GC07P002406', 'score': 0.28}, {'connected_gene': 'CHST12', 'score': 0.26}]
chr7	GH07I002445	2444400	2444601	0.2	[{'connected_gene': 'LFNG', 'score': 12.02}, {'connected_gene': 'BRAT1', 'score': 10.87}, {'connected_gene': 'GRIFIN', 'score': 0.29}, {'connected_gene': 'GC07P002406', 'score': 0.28}, {'connected_gene': 'CHST12', 'score': 0.26}]
chr7	GH07I002507	2507706	2513728	2.12	[{'connected_gene': 'LFNG', 'score': 561.6}, {'connected_gene': 'BRAT1', 'score': 6.52}, {'connected_gene': 'GRIFIN', 'score': 0.29}]
chr7	GH07I002496	2496027	2496216	0.43	[{'connected_gene': 'BRAT1', 'score': 11.36}, {'connected_gene': 'LFNG', 'score': 0.37}, {'connected_gene': 'GRIFIN', 'score': 0.37}]
chr7	GH07I002409	2408406	2408555	0.38	[{'connected_gene': 'GC07P002406', 'score': 550.77}, {'connected_gene': 'LOC645357', 'score': 13.11}, {'connected_gene': 'EIF3B', 'score': 13.03}, {'connected_gene': 'BRAT1', 'score': 11.01}, {'connected_gene': 'CHST12', 'score': 0.77}, {'connected_gene': 'GRIFIN', 'score': 0.2}]