PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
NR_029493	[[57918626, 57918698]]	None

Promoter

Chrom	Start	End	Description
chr17	57918299	57918329	CAGE_peak_4_at_MIR21_5end
chr17	57918343	57918368	CAGE_peak_6_at_MIR21_5end
chr17	57918422	57918461	CAGE_peak_2_at_MIR21_5end
chr17	57918463	57918513	CAGE_peak_1_at_MIR21_5end
chr17	57918547	57918564	CAGE_peak_3_at_MIR21_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr17	GH17I059705	59705256	59710489	2.31	[{'connected_gene': 'VMP1', 'score': 550.77}, {'connected_gene': 'PTRH2', 'score': 550.77}, {'connected_gene': 'PPM1D', 'score': 24.62}, {'connected_gene': 'RPS6KB1', 'score': 23.93}, {'connected_gene': 'TUBD1', 'score': 21.98}, {'connected_gene': 'RNFT1', 'score': 15.24}, {'connected_gene': 'SKA2', 'score': 14.54}, {'connected_gene': 'NDUFB8P2', 'score': 14.16}, {'connected_gene': 'RNFT1-DT', 'score': 14.03}, {'connected_gene': 'LOC100996660', 'score': 14.01}, {'connected_gene': 'RNU6-450P', 'score': 10.56}, {'connected_gene': 'MIR21', 'score': 10.56}, {'connected_gene': 'HEATR6', 'score': 10.26}, {'connected_gene': 'TRIM37', 'score': 10.01}, {'connected_gene': 'DHX40', 'score': 6.7}, {'connected_gene': 'GC17M059723', 'score': 0.37}]
chr17	GH17I059751	59751300	59771668	1.75	[{'connected_gene': 'RPS6KB1', 'score': 35.02}, {'connected_gene': 'TUBD1', 'score': 23.01}, {'connected_gene': 'NDUFB8P2', 'score': 17.96}, {'connected_gene': 'APPBP2', 'score': 14.9}, {'connected_gene': 'RNFT1-DT', 'score': 14.89}, {'connected_gene': 'ENSG00000274378', 'score': 13.08}, {'connected_gene': 'PPM1D', 'score': 12.98}, {'connected_gene': 'ENSG00000224738', 'score': 12.88}, {'connected_gene': 'MIR21', 'score': 12.57}, {'connected_gene': 'RNU6-450P', 'score': 12.56}, {'connected_gene': 'LOC100996660', 'score': 11.07}, {'connected_gene': 'SKA2', 'score': 10.52}, {'connected_gene': 'HEATR6', 'score': 10.26}, {'connected_gene': 'CA4', 'score': 6.44}, {'connected_gene': 'DHX40', 'score': 5.54}, {'connected_gene': 'VMP1', 'score': 5.01}, {'connected_gene': 'RNFT1', 'score': 4.54}, {'connected_gene': 'WFDC21P', 'score': 4.38}, {'connected_gene': 'YPEL2', 'score': 1.65}, {'connected_gene': 'ENSG00000267637', 'score': 0.34}, {'connected_gene': 'GC17M059723', 'score': 0.29}]
chr17	GH17I059781	59781749	59793599	2.03	[{'connected_gene': 'RPS6KB1', 'score': 29.97}, {'connected_gene': 'TUBD1', 'score': 26.79}, {'connected_gene': 'HEATR6', 'score': 24.03}, {'connected_gene': 'PPM1D', 'score': 22.86}, {'connected_gene': 'RNFT1-DT', 'score': 16.42}, {'connected_gene': 'SKA2', 'score': 14.53}, {'connected_gene': 'LOC100996660', 'score': 14.02}, {'connected_gene': 'MIR21', 'score': 12.81}, {'connected_gene': 'RNU6-450P', 'score': 12.8}, {'connected_gene': 'TRIM37', 'score': 10.01}, {'connected_gene': 'VMP1', 'score': 7.43}, {'connected_gene': 'ENSG00000274378', 'score': 7.1}, {'connected_gene': 'DHX40', 'score': 6.53}, {'connected_gene': 'CA4', 'score': 6.25}, {'connected_gene': 'RNFT1', 'score': 5.82}, {'connected_gene': 'NDUFB8P2', 'score': 5.17}, {'connected_gene': 'WFDC21P', 'score': 4.94}, {'connected_gene': 'ENSG00000267637', 'score': 0.77}, {'connected_gene': 'GC17M059791', 'score': 0.44}]
chr17	GH17I059686	59686106	59689561	0.59	[{'connected_gene': 'RPS6KB1', 'score': 11.36}, {'connected_gene': 'TUBD1', 'score': 11.36}, {'connected_gene': 'MIR21', 'score': 10.09}, {'connected_gene': 'RNU6-450P', 'score': 10.09}, {'connected_gene': 'DHX40', 'score': 5.42}, {'connected_gene': 'PRR11', 'score': 4.77}, {'connected_gene': 'GC17M059649', 'score': 0.44}, {'connected_gene': 'GC17P059695', 'score': 0.44}, {'connected_gene': 'PTRH2', 'score': 0.37}, {'connected_gene': 'CLTC', 'score': 0.2}]
chr17	GH17I059710	59710622	59710778	0.43	[{'connected_gene': 'RPS6KB1', 'score': 10.6}, {'connected_gene': 'TUBD1', 'score': 10.6}, {'connected_gene': 'RNU6-450P', 'score': 10.56}, {'connected_gene': 'MIR21', 'score': 10.56}, {'connected_gene': 'VMP1', 'score': 4.42}, {'connected_gene': 'CA4', 'score': 2.53}, {'connected_gene': 'DHX40', 'score': 1.36}, {'connected_gene': 'PTRH2', 'score': 0.77}, {'connected_gene': 'GC17M059723', 'score': 0.37}]
chr17	GH17I059775	59775146	59777711	0.8	[{'connected_gene': 'RPS6KB1', 'score': 34.68}, {'connected_gene': 'TUBD1', 'score': 22.67}, {'connected_gene': 'RNFT1-DT', 'score': 16.41}, {'connected_gene': 'APPBP2', 'score': 14.72}, {'connected_gene': 'NDUFB8P2', 'score': 14.21}, {'connected_gene': 'MIR21', 'score': 12.99}, {'connected_gene': 'PPM1D', 'score': 12.98}, {'connected_gene': 'RNU6-450P', 'score': 12.98}, {'connected_gene': 'ENSG00000224738', 'score': 12.87}, {'connected_gene': 'VMP1', 'score': 10.77}, {'connected_gene': 'PTRH2', 'score': 10.77}, {'connected_gene': 'HEATR6', 'score': 10.26}, {'connected_gene': 'ENSG00000274378', 'score': 6.53}, {'connected_gene': 'DHX40', 'score': 5.15}, {'connected_gene': 'RNFT1', 'score': 4.73}, {'connected_gene': 'ENSG00000267637', 'score': 0.44}, {'connected_gene': 'GC17M059723', 'score': 0.25}]
chr17	GH17I059780	59780792	59781569	0.46	[{'connected_gene': 'MIR21', 'score': 12.79}, {'connected_gene': 'RNU6-450P', 'score': 12.78}, {'connected_gene': 'ENSG00000274378', 'score': 7.1}, {'connected_gene': 'ENSG00000267637', 'score': 0.77}, {'connected_gene': 'GC17M059723', 'score': 0.23}, {'connected_gene': 'VMP1', 'score': 0.19}]
chr17	GH17I059778	59778767	59779389	0.66	[{'connected_gene': 'MIR21', 'score': 12.54}, {'connected_gene': 'RNU6-450P', 'score': 12.54}, {'connected_gene': 'ENSG00000267637', 'score': 0.44}, {'connected_gene': 'GC17M059723', 'score': 0.23}, {'connected_gene': 'VMP1', 'score': 0.19}]
chr17	GH17I059746	59746940	59747129	0.88	[{'connected_gene': 'MIR21', 'score': 12.29}, {'connected_gene': 'RNU6-450P', 'score': 12.28}, {'connected_gene': 'RPS6KB1', 'score': 11.61}, {'connected_gene': 'TUBD1', 'score': 11.61}, {'connected_gene': 'VMP1', 'score': 11.27}, {'connected_gene': 'PTRH2', 'score': 11.27}, {'connected_gene': 'GC17M059723', 'score': 0.37}, {'connected_gene': 'ENSG00000267637', 'score': 0.28}]
chr17	GH17I059773	59773222	59774500	0.8	[{'connected_gene': 'MIR21', 'score': 12.99}, {'connected_gene': 'RNU6-450P', 'score': 12.98}, {'connected_gene': 'RPS6KB1', 'score': 11.29}, {'connected_gene': 'TUBD1', 'score': 11.29}, {'connected_gene': 'HEATR6', 'score': 10.48}, {'connected_gene': 'DHX40', 'score': 5.94}, {'connected_gene': 'USP32', 'score': 4.86}, {'connected_gene': 'ENSG00000267637', 'score': 0.39}, {'connected_gene': 'GC17M059723', 'score': 0.25}, {'connected_gene': 'VMP1', 'score': 0.2}]
chr17	GH17I059872	59872420	59872649	0.58	[{'connected_gene': 'RNU6-450P', 'score': 11.57}, {'connected_gene': 'MIR21', 'score': 11.53}, {'connected_gene': 'NDUFB8P2', 'score': 0.39}, {'connected_gene': 'TUBD1', 'score': 0.34}, {'connected_gene': 'GC17M059848', 'score': 0.34}]
chr17	GH17I059819	59819572	59821431	0.49	[{'connected_gene': 'RNFT1-DT', 'score': 16.65}, {'connected_gene': 'MIR21', 'score': 12.77}, {'connected_gene': 'RNU6-450P', 'score': 12.74}, {'connected_gene': 'GC17M059826', 'score': 0.44}, {'connected_gene': 'GC17M059791', 'score': 0.31}, {'connected_gene': 'VMP1', 'score': 0.14}]
chr17	GH17I059748	59748700	59750129	0.6	[{'connected_gene': 'RNFT1-DT', 'score': 13.99}, {'connected_gene': 'MIR21', 'score': 12.29}, {'connected_gene': 'RNU6-450P', 'score': 12.28}, {'connected_gene': 'RPS6KB1', 'score': 11.61}, {'connected_gene': 'TUBD1', 'score': 11.61}, {'connected_gene': 'VMP1', 'score': 11.26}, {'connected_gene': 'PTRH2', 'score': 11.26}, {'connected_gene': 'ENSG00000274378', 'score': 5.94}, {'connected_gene': 'DHX40', 'score': 5.85}, {'connected_gene': 'RNFT1', 'score': 4.96}, {'connected_gene': 'GC17M059723', 'score': 0.34}, {'connected_gene': 'ENSG00000267637', 'score': 0.28}]
chr17	GH17I059899	59899220	59899369	0.78	[{'connected_gene': 'RNFT1-DT', 'score': 17.06}, {'connected_gene': 'RNU6-450P', 'score': 11.21}, {'connected_gene': 'MIR21', 'score': 11.2}, {'connected_gene': 'VMP1', 'score': 10.65}, {'connected_gene': 'PTRH2', 'score': 10.65}, {'connected_gene': 'HEATR6', 'score': 10.59}, {'connected_gene': 'ENSG00000274378', 'score': 8.9}, {'connected_gene': 'RPS6KB1', 'score': 0.44}, {'connected_gene': 'GC17P059894', 'score': 0.44}, {'connected_gene': 'RPS29P21', 'score': 0.39}]
chr17	GH17I059874	59874981	59875603	0.2	[{'connected_gene': 'RNFT1-DT', 'score': 14.27}, {'connected_gene': 'RNU6-450P', 'score': 11.55}, {'connected_gene': 'MIR21', 'score': 11.53}, {'connected_gene': 'NDUFB8P2', 'score': 0.44}, {'connected_gene': 'TUBD1', 'score': 0.37}, {'connected_gene': 'GC17M059848', 'score': 0.31}]
chr17	GH17I059727	59727201	59727400	0.38	[{'connected_gene': 'GC17M059723', 'score': 550.77}, {'connected_gene': 'VMP1', 'score': 11.54}, {'connected_gene': 'RPS6KB1', 'score': 11.34}, {'connected_gene': 'TUBD1', 'score': 11.34}, {'connected_gene': 'MIR21', 'score': 11.2}, {'connected_gene': 'RNU6-450P', 'score': 11.19}, {'connected_gene': 'ENSG00000267637', 'score': 0.22}]
chr17	GH17I059725	59725001	59726489	1.09	[{'connected_gene': 'GC17M059723', 'score': 550.77}, {'connected_gene': 'RPS6KB1', 'score': 11.81}, {'connected_gene': 'TUBD1', 'score': 11.81}, {'connected_gene': 'MIR21', 'score': 10.87}, {'connected_gene': 'RNU6-450P', 'score': 10.87}, {'connected_gene': 'HEATR6', 'score': 10.47}, {'connected_gene': 'VMP1', 'score': 0.37}, {'connected_gene': 'PTRH2', 'score': 0.37}]
chr17	GH17I059824	59824790	59860981	2.82	[{'connected_gene': 'GC17M059841', 'score': 550.77}, {'connected_gene': 'GC17M059843', 'score': 550.77}, {'connected_gene': 'GC17P059842', 'score': 550.77}, {'connected_gene': 'GC17P059845', 'score': 550.77}, {'connected_gene': 'GC17P059844', 'score': 550.77}, {'connected_gene': 'MIR21', 'score': 550.77}, {'connected_gene': 'GC17P059843', 'score': 550.77}, {'connected_gene': 'GC17M059842', 'score': 550.77}, {'connected_gene': 'PPM1D', 'score': 69.38}, {'connected_gene': 'TUBD1', 'score': 57.04}, {'connected_gene': 'RPS6KB1', 'score': 50.8}, {'connected_gene': 'NDUFB8P2', 'score': 37.69}, {'connected_gene': 'HEATR6', 'score': 32.24}, {'connected_gene': 'RNFT1-DT', 'score': 16.67}, {'connected_gene': 'DHX40', 'score': 15.39}, {'connected_gene': 'VMP1', 'score': 12.38}, {'connected_gene': 'PTRH2', 'score': 11.98}, {'connected_gene': 'ENSG00000274378', 'score': 9.8}, {'connected_gene': 'RNFT1', 'score': 8.51}, {'connected_gene': 'CLTC', 'score': 5.52}, {'connected_gene': 'SKA2', 'score': 4.55}, {'connected_gene': 'CA4', 'score': 1.98}, {'connected_gene': 'YPEL2', 'score': 1.28}, {'connected_gene': 'RNU6-450P', 'score': 0.77}, {'connected_gene': 'GC17M059848', 'score': 0.77}, {'connected_gene': 'GC17P059837', 'score': 0.44}, {'connected_gene': 'GC17M059826', 'score': 0.37}]