PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
NR_029610	[[9211726, 9211836]]	None

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I009237	9237717	9245937	2.09	[{'connected_gene': 'H6PD', 'score': 567.73}, {'connected_gene': 'GPR157', 'score': 11.44}, {'connected_gene': 'MIR34A', 'score': 11.11}, {'connected_gene': 'PIR53045', 'score': 0.34}]
chr1	GH01I009210	9210570	9212155	1.07	[{'connected_gene': 'H6PD', 'score': 16.87}, {'connected_gene': 'MIR34A', 'score': 11.65}, {'connected_gene': 'GPR157', 'score': 11.33}, {'connected_gene': 'LINC01759', 'score': 5.19}, {'connected_gene': 'GC01P009203', 'score': 0.44}, {'connected_gene': 'GC01M009234', 'score': 0.34}]
chr1	GH01I009207	9207100	9208252	0.85	[{'connected_gene': 'H6PD', 'score': 12.18}, {'connected_gene': 'MIR34A', 'score': 11.65}, {'connected_gene': 'GPR157', 'score': 11.34}, {'connected_gene': 'LINC01759', 'score': 5.19}, {'connected_gene': 'GC01P009203', 'score': 0.77}, {'connected_gene': 'GC01M009234', 'score': 0.31}]
chr1	GH01I009231	9231202	9232470	1.27	[{'connected_gene': 'H6PD', 'score': 18.27}, {'connected_gene': 'MIR34A', 'score': 11.45}, {'connected_gene': 'GPR157', 'score': 11.33}, {'connected_gene': 'GC01M009234', 'score': 0.77}, {'connected_gene': 'GC01P009203', 'score': 0.31}]
chr1	GH01I009257	9257073	9261027	0.66	[{'connected_gene': 'H6PD', 'score': 13.99}, {'connected_gene': 'MIR34A', 'score': 11.24}, {'connected_gene': 'GPR157', 'score': 11.0}, {'connected_gene': 'PIR53045', 'score': 0.44}]
chr1	GH01I009153	9153596	9154970	0.31	[{'connected_gene': 'GPR157', 'score': 12.17}, {'connected_gene': 'H6PD', 'score': 10.96}, {'connected_gene': 'SLC2A5', 'score': 9.53}, {'connected_gene': 'MIR34A', 'score': 0.77}, {'connected_gene': 'GC01P009164', 'score': 0.44}, {'connected_gene': 'MIR34AHG', 'score': 0.26}]
chr1	GH01I009135	9135427	9135728	0.66	[{'connected_gene': 'GPR157', 'score': 4.79}, {'connected_gene': 'SLC25A33', 'score': 1.48}, {'connected_gene': 'MIR34A', 'score': 0.37}]
chr1	GH01I009225	9225061	9226126	0.43	[{'connected_gene': 'GPR157', 'score': 11.61}, {'connected_gene': 'MIR34A', 'score': 11.34}, {'connected_gene': 'H6PD', 'score': 8.12}, {'connected_gene': 'LINC01759', 'score': 4.62}, {'connected_gene': 'GC01M009234', 'score': 0.44}, {'connected_gene': 'GC01P009203', 'score': 0.34}]
chr1	GH01I009101	9101662	9101811	0.65	[{'connected_gene': 'GPR157', 'score': 12.36}, {'connected_gene': 'MIR34A', 'score': 11.4}, {'connected_gene': 'SLC2A5', 'score': 0.39}, {'connected_gene': 'PIR42185', 'score': 0.34}]
chr1	GH01I009160	9160796	9161919	0.38	[{'connected_gene': 'GPR157', 'score': 12.04}, {'connected_gene': 'GC01P009164', 'score': 0.77}, {'connected_gene': 'MIR34A', 'score': 0.44}, {'connected_gene': 'MIR34AHG', 'score': 0.28}]
chr1	GH01I009142	9142342	9142601	0.92	[{'connected_gene': 'GPR157', 'score': 7.4}, {'connected_gene': 'MIR34A', 'score': 0.44}]
chr1	GH01I008993	8993307	8995275	0.56	[{'connected_gene': 'CA6', 'score': 13.18}, {'connected_gene': 'SLC2A7', 'score': 12.12}, {'connected_gene': 'RNU6-304P', 'score': 10.86}, {'connected_gene': 'MIR34A', 'score': 10.52}, {'connected_gene': 'LZIC', 'score': 5.7}, {'connected_gene': 'GC01M008979', 'score': 0.39}, {'connected_gene': 'RN7SL451P', 'score': 0.39}]
chr1	GH01I009145	9145037	9145846	0.95	[{'connected_gene': 'SLC2A5', 'score': 11.62}, {'connected_gene': 'GPR157', 'score': 9.02}, {'connected_gene': 'MIR34A', 'score': 0.44}]
chr1	GH01I009252	9252730	9254017	1.03	[{'connected_gene': 'MIR34A', 'score': 10.8}, {'connected_gene': 'PIR53045', 'score': 0.39}, {'connected_gene': 'H6PD', 'score': 0.37}]
chr1	GH01I009365	9365513	9367014	0.38	[{'connected_gene': 'MIR34A', 'score': 10.25}, {'connected_gene': 'ENSG00000284652', 'score': 0.22}, {'connected_gene': 'SPSB1', 'score': 0.19}]
chr1	GH01I009326	9324542	9324691	0.4	[{'connected_gene': 'MIR34A', 'score': 10.21}, {'connected_gene': 'SPSB1', 'score': 0.29}, {'connected_gene': 'ENSG00000284652', 'score': 0.15}]
chr1	GH01I009368	9368221	9369014	0.31	[{'connected_gene': 'MIR34A', 'score': 10.25}, {'connected_gene': 'ENSG00000284652', 'score': 0.23}, {'connected_gene': 'SPSB1', 'score': 0.18}]
chr1	GH01I009322	9322982	9323529	0.43	[{'connected_gene': 'MIR34A', 'score': 10.21}, {'connected_gene': 'SPSB1', 'score': 0.29}, {'connected_gene': 'ENSG00000284652', 'score': 0.15}]
chr1	GH01I009324	9324732	9325085	0.2	[{'connected_gene': 'MIR34A', 'score': 10.21}, {'connected_gene': 'SPSB1', 'score': 0.29}, {'connected_gene': 'ENSG00000284652', 'score': 0.15}]
chr1	GH01I009319	9319220	9322431	1	[{'connected_gene': 'MIR34A', 'score': 10.22}, {'connected_gene': 'SPSB1', 'score': 0.31}, {'connected_gene': 'ENSG00000284652', 'score': 0.15}]
chr1	GH01I009255	9255560	9256947	0.2	[{'connected_gene': 'MIR34A', 'score': 11.25}, {'connected_gene': 'GPR157', 'score': 11.0}, {'connected_gene': 'PIR53045', 'score': 0.44}, {'connected_gene': 'H6PD', 'score': 0.34}]
chr1	GH01I009530	9530952	9531805	0.57	[{'connected_gene': 'MIR34A', 'score': 9.9}, {'connected_gene': 'GPR157', 'score': 9.73}, {'connected_gene': 'SLC25A33', 'score': 0.44}, {'connected_gene': 'ENSG00000235263', 'score': 0.31}]
chr1	GH01I009532	9532482	9533687	0.71	[{'connected_gene': 'MIR34A', 'score': 9.9}, {'connected_gene': 'GPR157', 'score': 9.73}, {'connected_gene': 'SLC25A33', 'score': 0.44}, {'connected_gene': 'ENSG00000235263', 'score': 0.31}]
chr1	GH01I009351	9351138	9353742	0.59	[{'connected_gene': 'MIR34A', 'score': 10.81}, {'connected_gene': 'GPR157', 'score': 10.61}, {'connected_gene': 'SPSB1', 'score': 0.22}, {'connected_gene': 'ENSG00000284652', 'score': 0.19}]
chr1	GH01I009143	9143001	9144051	1.06	[{'connected_gene': 'MIR34A', 'score': 0.44}, {'connected_gene': 'GPR157', 'score': 0.39}]
chr1	GH01I009149	9149496	9152259	1.09	[{'connected_gene': 'MIR34A', 'score': 550.77}, {'connected_gene': 'SLC2A5', 'score': 8.26}, {'connected_gene': 'GPR157', 'score': 7.46}, {'connected_gene': 'MIR34AHG', 'score': 0.25}]
chr1	GH01I009314	9314241	9318799	1.22	[{'connected_gene': 'MIR34A', 'score': 10.21}, {'connected_gene': 'PIK3CD', 'score': 4.27}, {'connected_gene': 'SPSB1', 'score': 0.34}, {'connected_gene': 'ENSG00000284652', 'score': 0.14}]
chr1	GH01I009369	9369550	9377696	1.47	[{'connected_gene': 'MIR34A', 'score': 10.31}, {'connected_gene': 'RBP7', 'score': 6.42}, {'connected_gene': 'ENSG00000284652', 'score': 0.25}, {'connected_gene': 'SPSB1', 'score': 0.18}]
chr1	GH01I009121	9121900	9122755	0.89	[{'connected_gene': 'MIR34A', 'score': 11.79}, {'connected_gene': 'RNU6-304P', 'score': 9.36}, {'connected_gene': 'GPR157', 'score': 7.38}, {'connected_gene': 'SLC2A5', 'score': 5.2}, {'connected_gene': 'PIR42185', 'score': 0.77}]
chr1	GH01I009119	9119781	9119991	0.98	[{'connected_gene': 'MIR34A', 'score': 11.78}, {'connected_gene': 'RNU6-304P', 'score': 9.36}, {'connected_gene': 'PIR42185', 'score': 0.44}, {'connected_gene': 'GPR157', 'score': 0.44}, {'connected_gene': 'SLC2A5', 'score': 0.29}]
chr1	GH01I009117	9117803	9118877	0.2	[{'connected_gene': 'MIR34A', 'score': 11.78}, {'connected_gene': 'RNU6-304P', 'score': 9.36}, {'connected_gene': 'PIR42185', 'score': 0.44}, {'connected_gene': 'GPR157', 'score': 0.39}, {'connected_gene': 'SLC2A5', 'score': 0.31}]
chr1	GH01I009051	9051019	9051045	0.33	[{'connected_gene': 'SLC2A7', 'score': 13.39}, {'connected_gene': 'SLC2A5', 'score': 12.47}, {'connected_gene': 'GPR157', 'score': 10.75}, {'connected_gene': 'MIR34A', 'score': 10.73}, {'connected_gene': 'RNU6-304P', 'score': 10.61}, {'connected_gene': 'RERE', 'score': 1.65}, {'connected_gene': 'PIR51806', 'score': 0.37}, {'connected_gene': 'GC01P009083', 'score': 0.29}]
chr1	GH01I009005	9005001	9005594	0.98	[{'connected_gene': 'SLC2A7', 'score': 13.37}, {'connected_gene': 'SLC2A5', 'score': 12.17}, {'connected_gene': 'RNU6-304P', 'score': 10.86}, {'connected_gene': 'MIR34A', 'score': 10.19}, {'connected_gene': 'GC01M008979', 'score': 0.31}, {'connected_gene': 'RN7SL451P', 'score': 0.31}]
chr1	GH01I009434	9434238	9445127	1.6	[{'connected_gene': 'RNA5SP40', 'score': 550.77}, {'connected_gene': 'LOC100506022', 'score': 550.77}, {'connected_gene': 'GPR157', 'score': 10.48}, {'connected_gene': 'MIR34A', 'score': 10.31}, {'connected_gene': 'SPSB1', 'score': 2.34}]
chr1	GH01I009123	9123812	9124384	0.38	[{'connected_gene': 'PIR42185', 'score': 550.77}, {'connected_gene': 'MIR34A', 'score': 11.79}, {'connected_gene': 'RNU6-304P', 'score': 9.36}, {'connected_gene': 'GPR157', 'score': 0.44}, {'connected_gene': 'SLC2A5', 'score': 0.28}]
chr1	GH01I009124	9124439	9124700	0.64	[{'connected_gene': 'PIR42185', 'score': 550.77}, {'connected_gene': 'MIR34A', 'score': 11.79}, {'connected_gene': 'RNU6-304P', 'score': 9.36}, {'connected_gene': 'GPR157', 'score': 0.77}, {'connected_gene': 'SLC2A5', 'score': 0.28}]
chr1	GH01I009128	9126201	9126400	0.66	[{'connected_gene': 'PIR42185', 'score': 550.77}, {'connected_gene': 'MIR34A', 'score': 11.79}, {'connected_gene': 'RNU6-304P', 'score': 9.36}, {'connected_gene': 'PIR37771', 'score': 0.77}, {'connected_gene': 'GPR157', 'score': 0.77}]
chr1	GH01I008907	8907135	8907961	0.2	[{'connected_gene': 'ENSG00000232208', 'score': 550.77}, {'connected_gene': 'RNU6-304P', 'score': 12.96}, {'connected_gene': 'GPR157', 'score': 10.32}, {'connected_gene': 'MIR34A', 'score': 10.23}, {'connected_gene': 'ENSG00000221083', 'score': 8.69}, {'connected_gene': 'ENO1', 'score': 6.6}, {'connected_gene': 'HMGN2P17', 'score': 0.39}]