PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000384898	[[4770681, 4770791]]	None
NR_029607	[[4770681, 4770791]]	None

Promoter

Chrom	Start	End	Description
chr19	4770772	4770775	CAGE_peak_1_at_MIR7-3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I004769	4769589	4769798	1.08	[{'connected_gene': 'MIR7-3HG', 'score': 556.09}, {'connected_gene': 'MIR7-3', 'score': 550.77}, {'connected_gene': 'GC19P004774', 'score': 550.77}, {'connected_gene': 'GC19P004786', 'score': 550.77}, {'connected_gene': 'ENSG00000267030', 'score': 27.2}, {'connected_gene': 'ENSG00000267769', 'score': 24.85}, {'connected_gene': 'SAFB', 'score': 23.95}, {'connected_gene': 'PTPRS', 'score': 22.5}, {'connected_gene': 'CCDC94', 'score': 13.89}, {'connected_gene': 'DPP9-AS1', 'score': 11.66}, {'connected_gene': 'SAFB2', 'score': 11.12}, {'connected_gene': 'SH3GL1', 'score': 10.8}, {'connected_gene': 'ENSG00000267255', 'score': 9.78}, {'connected_gene': 'PIAS4', 'score': 9.75}]
chr19	GH19I004744	4744536	4745658	0.98	[{'connected_gene': 'MIR7-3HG', 'score': 13.5}, {'connected_gene': 'MIR7-3', 'score': 13.48}, {'connected_gene': 'FEM1A', 'score': 13.41}, {'connected_gene': 'DPP9', 'score': 11.98}, {'connected_gene': 'PLIN3', 'score': 10.91}, {'connected_gene': 'GC19M004737', 'score': 0.34}, {'connected_gene': 'TRV-CAC3-1', 'score': 0.34}]
chr19	GH19I004741	4741992	4743436	0.68	[{'connected_gene': 'MIR7-3HG', 'score': 13.48}, {'connected_gene': 'MIR7-3', 'score': 13.48}, {'connected_gene': 'FEM1A', 'score': 13.41}, {'connected_gene': 'HDGFL2', 'score': 12.55}, {'connected_gene': 'PIAS4', 'score': 12.02}, {'connected_gene': 'PLIN3', 'score': 10.91}, {'connected_gene': 'GC19M004737', 'score': 0.37}, {'connected_gene': 'TRV-CAC3-1', 'score': 0.37}]
chr19	GH19I004770	4769009	4769158	0.62	[{'connected_gene': 'MIR7-3HG', 'score': 550.77}, {'connected_gene': 'GC19P004786', 'score': 550.77}, {'connected_gene': 'MIR7-3', 'score': 550.77}, {'connected_gene': 'GC19P004774', 'score': 550.77}, {'connected_gene': 'GC19M004737', 'score': 0.26}, {'connected_gene': 'TRV-CAC3-1', 'score': 0.26}]
chr19	GH19I004828	4828857	4833475	2.23	[{'connected_gene': 'TICAM1', 'score': 557.87}, {'connected_gene': 'GC19P004832', 'score': 550.77}, {'connected_gene': 'SAFB2', 'score': 16.45}, {'connected_gene': 'PLIN3', 'score': 12.17}, {'connected_gene': 'SAFB', 'score': 11.68}, {'connected_gene': 'ARRDC5', 'score': 11.63}, {'connected_gene': 'FEM1A', 'score': 11.59}, {'connected_gene': 'MIR7-3HG', 'score': 11.52}, {'connected_gene': 'MIR7-3', 'score': 11.52}, {'connected_gene': 'SNRPEP4', 'score': 10.55}, {'connected_gene': 'CCDC94', 'score': 10.33}, {'connected_gene': 'DUS3L', 'score': 10.27}, {'connected_gene': 'ENSG00000269807', 'score': 10.04}, {'connected_gene': 'DPP9-AS1', 'score': 9.98}, {'connected_gene': 'ENSG00000269604', 'score': 0.28}]