Visualization of regulatory element with DNMs in transcripts



Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.

Transcripts
Transcript ID Transcript exon region Coding exon region
NR_029692 [[89911247, 89911337]] None
Promoter
Chrom Start End Description
chr15 89910903 89910915 CAGE_peak_1_at_MIR9-3_5end

Enhancer
Chrom Start End Genehancer ID Score Attributes
chr15 GH15I089430 89430401 89431204 1.12 [{'connected_gene': 'MIR9-3', 'score': 11.53}, {'connected_gene': 'MIR9-3HG', 'score': 11.52}, {'connected_gene': 'POLG', 'score': 11.26}, {'connected_gene': 'GC15M089390', 'score': 0.77}, {'connected_gene': 'GC15P089452', 'score': 0.34}, {'connected_gene': 'LOC105371031', 'score': 0.29}]
chr15 GH15I089411 89411550 89411739 0.83 [{'connected_gene': 'MIR9-3', 'score': 12.79}, {'connected_gene': 'MIR9-3HG', 'score': 12.76}, {'connected_gene': 'POLG', 'score': 11.59}, {'connected_gene': 'LOC105371031', 'score': 0.39}, {'connected_gene': 'GC15M089390', 'score': 0.37}]
chr15 GH15I089392 89392635 89394030 0.31 [{'connected_gene': 'MIR9-3', 'score': 13.06}, {'connected_gene': 'MIR9-3HG', 'score': 13.04}, {'connected_gene': 'POLG', 'score': 11.44}, {'connected_gene': 'PIR56199', 'score': 0.77}, {'connected_gene': 'GC15P089381', 'score': 0.39}, {'connected_gene': 'GC15M089390', 'score': 0.29}]
chr15 GH15I089416 89416370 89416599 0.81 [{'connected_gene': 'MIR9-3', 'score': 12.36}, {'connected_gene': 'MIR9-3HG', 'score': 12.35}, {'connected_gene': 'GC15M089390', 'score': 0.39}, {'connected_gene': 'LOC105371031', 'score': 0.37}]
chr15 GH15I089442 89442830 89442979 0.6 [{'connected_gene': 'MIR9-3', 'score': 11.71}, {'connected_gene': 'MIR9-3HG', 'score': 11.69}, {'connected_gene': 'GC15P089452', 'score': 0.44}, {'connected_gene': 'GC15M089390', 'score': 0.37}]
chr15 GH15I089441 89441155 89442000 0.95 [{'connected_gene': 'MIR9-3', 'score': 11.71}, {'connected_gene': 'MIR9-3HG', 'score': 11.7}, {'connected_gene': 'GC15M089390', 'score': 0.39}, {'connected_gene': 'GC15P089452', 'score': 0.39}]
chr15 GH15I089368 89368383 89369717 0.52 [{'connected_gene': 'MIR9-3', 'score': 550.77}, {'connected_gene': 'GC15P089369', 'score': 550.77}, {'connected_gene': 'GC15P089367', 'score': 550.77}, {'connected_gene': 'GC15P089372', 'score': 0.77}, {'connected_gene': 'MIR9-3HG', 'score': 0.44}]
chr15 GH15I089367 89367530 89367679 0.88 [{'connected_gene': 'MIR9-3', 'score': 550.77}, {'connected_gene': 'GC15P089369', 'score': 550.77}, {'connected_gene': 'GC15P089367', 'score': 550.77}, {'connected_gene': 'MIR9-3HG', 'score': 0.44}]
chr15 GH15I089346 89346630 89346779 0.31 [{'connected_gene': 'MIR9-3', 'score': 11.69}, {'connected_gene': 'GC15P089341', 'score': 0.39}, {'connected_gene': 'ENSG00000279708', 'score': 0.39}]
chr15 GH15I089462 89462116 89463078 0.74 [{'connected_gene': 'LOC105370963', 'score': 550.77}, {'connected_gene': 'GC15P089465', 'score': 550.77}, {'connected_gene': 'GC15P089464', 'score': 550.77}, {'connected_gene': 'MIR9-3', 'score': 11.47}, {'connected_gene': 'MIR9-3HG', 'score': 11.45}, {'connected_gene': 'ENSG00000261478', 'score': 8.33}, {'connected_gene': 'LOC105370964', 'score': 0.44}]
chr15 GH15I089458 89458609 89461624 0.8 [{'connected_gene': 'LOC105370963', 'score': 550.77}, {'connected_gene': 'MIR9-3', 'score': 11.47}, {'connected_gene': 'MIR9-3HG', 'score': 11.46}, {'connected_gene': 'ENSG00000261478', 'score': 5.34}, {'connected_gene': 'GC15P089454', 'score': 0.44}, {'connected_gene': 'LOC105370964', 'score': 0.44}]
chr15 GH15I089371 89371390 89371539 0.58 [{'connected_gene': 'GC15P089372', 'score': 550.77}, {'connected_gene': 'MIR9-3', 'score': 0.77}, {'connected_gene': 'MIR9-3HG', 'score': 0.44}]
chr15 GH15I089370 89370150 89370299 0.8 [{'connected_gene': 'GC15P089372', 'score': 0.77}, {'connected_gene': 'MIR9-3', 'score': 0.77}, {'connected_gene': 'MIR9-3HG', 'score': 0.44}]
chr15 GH15I089372 89371711 89372872 0.46 [{'connected_gene': 'GC15P089372', 'score': 550.77}, {'connected_gene': 'GC15M089372', 'score': 550.77}, {'connected_gene': 'MIR9-3HG', 'score': 4.64}, {'connected_gene': 'MIR9-3', 'score': 0.77}]
chr15 GH15I089412 89412870 89413666 0.49 [{'connected_gene': 'ENSG00000173867', 'score': 19.85}, {'connected_gene': 'RPL36AP43', 'score': 13.69}, {'connected_gene': 'MIR9-3', 'score': 12.36}, {'connected_gene': 'MIR9-3HG', 'score': 12.35}, {'connected_gene': 'KIF7', 'score': 12.28}, {'connected_gene': 'DET1', 'score': 12.03}, {'connected_gene': 'ARPIN', 'score': 10.07}, {'connected_gene': 'GC15M089390', 'score': 0.39}, {'connected_gene': 'LOC105371031', 'score': 0.39}]