PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
NR_029692	[[89911247, 89911337]]	None

Promoter

Chrom	Start	End	Description
chr15	89910903	89910915	CAGE_peak_1_at_MIR9-3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I089430	89430401	89431204	1.12	[{'connected_gene': 'MIR9-3', 'score': 11.53}, {'connected_gene': 'MIR9-3HG', 'score': 11.52}, {'connected_gene': 'POLG', 'score': 11.26}, {'connected_gene': 'GC15M089390', 'score': 0.77}, {'connected_gene': 'GC15P089452', 'score': 0.34}, {'connected_gene': 'LOC105371031', 'score': 0.29}]
chr15	GH15I089411	89411550	89411739	0.83	[{'connected_gene': 'MIR9-3', 'score': 12.79}, {'connected_gene': 'MIR9-3HG', 'score': 12.76}, {'connected_gene': 'POLG', 'score': 11.59}, {'connected_gene': 'LOC105371031', 'score': 0.39}, {'connected_gene': 'GC15M089390', 'score': 0.37}]
chr15	GH15I089392	89392635	89394030	0.31	[{'connected_gene': 'MIR9-3', 'score': 13.06}, {'connected_gene': 'MIR9-3HG', 'score': 13.04}, {'connected_gene': 'POLG', 'score': 11.44}, {'connected_gene': 'PIR56199', 'score': 0.77}, {'connected_gene': 'GC15P089381', 'score': 0.39}, {'connected_gene': 'GC15M089390', 'score': 0.29}]
chr15	GH15I089416	89416370	89416599	0.81	[{'connected_gene': 'MIR9-3', 'score': 12.36}, {'connected_gene': 'MIR9-3HG', 'score': 12.35}, {'connected_gene': 'GC15M089390', 'score': 0.39}, {'connected_gene': 'LOC105371031', 'score': 0.37}]
chr15	GH15I089442	89442830	89442979	0.6	[{'connected_gene': 'MIR9-3', 'score': 11.71}, {'connected_gene': 'MIR9-3HG', 'score': 11.69}, {'connected_gene': 'GC15P089452', 'score': 0.44}, {'connected_gene': 'GC15M089390', 'score': 0.37}]
chr15	GH15I089441	89441155	89442000	0.95	[{'connected_gene': 'MIR9-3', 'score': 11.71}, {'connected_gene': 'MIR9-3HG', 'score': 11.7}, {'connected_gene': 'GC15M089390', 'score': 0.39}, {'connected_gene': 'GC15P089452', 'score': 0.39}]
chr15	GH15I089368	89368383	89369717	0.52	[{'connected_gene': 'MIR9-3', 'score': 550.77}, {'connected_gene': 'GC15P089369', 'score': 550.77}, {'connected_gene': 'GC15P089367', 'score': 550.77}, {'connected_gene': 'GC15P089372', 'score': 0.77}, {'connected_gene': 'MIR9-3HG', 'score': 0.44}]
chr15	GH15I089367	89367530	89367679	0.88	[{'connected_gene': 'MIR9-3', 'score': 550.77}, {'connected_gene': 'GC15P089369', 'score': 550.77}, {'connected_gene': 'GC15P089367', 'score': 550.77}, {'connected_gene': 'MIR9-3HG', 'score': 0.44}]
chr15	GH15I089346	89346630	89346779	0.31	[{'connected_gene': 'MIR9-3', 'score': 11.69}, {'connected_gene': 'GC15P089341', 'score': 0.39}, {'connected_gene': 'ENSG00000279708', 'score': 0.39}]
chr15	GH15I089462	89462116	89463078	0.74	[{'connected_gene': 'LOC105370963', 'score': 550.77}, {'connected_gene': 'GC15P089465', 'score': 550.77}, {'connected_gene': 'GC15P089464', 'score': 550.77}, {'connected_gene': 'MIR9-3', 'score': 11.47}, {'connected_gene': 'MIR9-3HG', 'score': 11.45}, {'connected_gene': 'ENSG00000261478', 'score': 8.33}, {'connected_gene': 'LOC105370964', 'score': 0.44}]
chr15	GH15I089458	89458609	89461624	0.8	[{'connected_gene': 'LOC105370963', 'score': 550.77}, {'connected_gene': 'MIR9-3', 'score': 11.47}, {'connected_gene': 'MIR9-3HG', 'score': 11.46}, {'connected_gene': 'ENSG00000261478', 'score': 5.34}, {'connected_gene': 'GC15P089454', 'score': 0.44}, {'connected_gene': 'LOC105370964', 'score': 0.44}]
chr15	GH15I089371	89371390	89371539	0.58	[{'connected_gene': 'GC15P089372', 'score': 550.77}, {'connected_gene': 'MIR9-3', 'score': 0.77}, {'connected_gene': 'MIR9-3HG', 'score': 0.44}]
chr15	GH15I089370	89370150	89370299	0.8	[{'connected_gene': 'GC15P089372', 'score': 0.77}, {'connected_gene': 'MIR9-3', 'score': 0.77}, {'connected_gene': 'MIR9-3HG', 'score': 0.44}]
chr15	GH15I089372	89371711	89372872	0.46	[{'connected_gene': 'GC15P089372', 'score': 550.77}, {'connected_gene': 'GC15M089372', 'score': 550.77}, {'connected_gene': 'MIR9-3HG', 'score': 4.64}, {'connected_gene': 'MIR9-3', 'score': 0.77}]
chr15	GH15I089412	89412870	89413666	0.49	[{'connected_gene': 'ENSG00000173867', 'score': 19.85}, {'connected_gene': 'RPL36AP43', 'score': 13.69}, {'connected_gene': 'MIR9-3', 'score': 12.36}, {'connected_gene': 'MIR9-3HG', 'score': 12.35}, {'connected_gene': 'KIF7', 'score': 12.28}, {'connected_gene': 'DET1', 'score': 12.03}, {'connected_gene': 'ARPIN', 'score': 10.07}, {'connected_gene': 'GC15M089390', 'score': 0.39}, {'connected_gene': 'LOC105371031', 'score': 0.39}]