PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000261483	[[109025066, 109026253], [109049220, 109049475], [109051820, 109051965], [109065042, 109065214], [109091029, 109091157], [109103235, 109103409], [109106055, 109106242], [109110488, 109110666], [109117096, 109117299], [109120444, 109120627], [109124634, 109124749], [109125160, 109125228], [109152973, 109153139], [109155369, 109155588], [109155920, 109156043], [109159423, 109159538], [109178028, 109178162], [109181565, 109181707], [109183357, 109183491], [109190840, 109191035], [109200736, 109200847], [109202546, 109202879]]	[[109026118, 109026253], [109049220, 109049475], [109051820, 109051965], [109065042, 109065214], [109091029, 109091157], [109103235, 109103409], [109106055, 109106242], [109110488, 109110666], [109117096, 109117299], [109120444, 109120627], [109124634, 109124749], [109125160, 109125228], [109152973, 109153139], [109155369, 109155588], [109155920, 109156043], [109159423, 109159538], [109178028, 109178162], [109181565, 109181707], [109183357, 109183491], [109190840, 109191035], [109200736, 109200847], [109202546, 109202699]]
ENST00000502261	[[109129875, 109129938], [109152973, 109153139], [109155369, 109155588]]	None
ENST00000508043	[[109139876, 109139978], [109152973, 109153139], [109155369, 109155588], [109155920, 109155979]]	None
ENST00000513921	[[109189281, 109191035], [109200736, 109200847], [109202546, 109202874]]	None
ENST00000505313	[[109190622, 109191035], [109200736, 109201116]]	None
ENST00000503970	[[109198028, 109200847], [109202546, 109205326]]	None
NM_002372	[[109025066, 109026253], [109049220, 109049475], [109051820, 109051965], [109065042, 109065214], [109091029, 109091157], [109103235, 109103409], [109106055, 109106242], [109110488, 109110666], [109117096, 109117299], [109120444, 109120627], [109124634, 109124749], [109125160, 109125228], [109152973, 109153139], [109155369, 109155588], [109155920, 109156043], [109159423, 109159538], [109178028, 109178162], [109181565, 109181707], [109183357, 109183491], [109190840, 109191035], [109200736, 109200847], [109202546, 109205326]]	[[109026118, 109026253], [109049220, 109049475], [109051820, 109051965], [109065042, 109065214], [109091029, 109091157], [109103235, 109103409], [109106055, 109106242], [109110488, 109110666], [109117096, 109117299], [109120444, 109120627], [109124634, 109124749], [109125160, 109125228], [109152973, 109153139], [109155369, 109155588], [109155920, 109156043], [109159423, 109159538], [109178028, 109178162], [109181565, 109181707], [109183357, 109183491], [109190840, 109191035], [109200736, 109200847], [109202546, 109202699]]

Promoter

Chrom	Start	End	Description
chr5	109025067	109025146	CAGE_peak_2_at_MAN2A1_5end
chr5	109025262	109025274	CAGE_peak_7_at_MAN2A1_5end
chr5	109025440	109025461	CAGE_peak_8_at_MAN2A1_5end
chr5	109025462	109025484	CAGE_peak_11_at_MAN2A1_5end
chr5	109025587	109025598	CAGE_peak_4_at_MAN2A1_5end
chr5	109025616	109025640	CAGE_peak_1_at_MAN2A1_5end
chr5	109025646	109025655	CAGE_peak_5_at_MAN2A1_5end
chr5	109025744	109025756	CAGE_peak_3_at_MAN2A1_5end
chr5	109025860	109025871	CAGE_peak_9_at_MAN2A1_5end
chr5	109025976	109026006	CAGE_peak_12_at_MAN2A1_5end
chr5	109026049	109026067	CAGE_peak_13_at_MAN2A1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr5	GH05I109406	109406888	109412486	2.59	[{'connected_gene': 'PJA2', 'score': 563.32}, {'connected_gene': 'LOC285638', 'score': 40.62}, {'connected_gene': 'LINC01023', 'score': 12.29}, {'connected_gene': 'MAN2A1', 'score': 3.6}, {'connected_gene': 'GC05P109401', 'score': 0.44}]
chr5	GH05I109643	109643828	109646644	0.72	[{'connected_gene': 'MAN2A1', 'score': 5.89}, {'connected_gene': 'PJA2', 'score': 5.56}, {'connected_gene': 'RN7SKP230', 'score': 4.45}, {'connected_gene': 'LOC105379118', 'score': 0.34}, {'connected_gene': 'PIR59063', 'score': 0.29}]
chr5	GH05I109652	109652926	109654143	0.38	[{'connected_gene': 'MAN2A1', 'score': 12.73}, {'connected_gene': 'LOC285638', 'score': 6.0}, {'connected_gene': 'LOC105379118', 'score': 0.39}, {'connected_gene': 'PIR59063', 'score': 0.26}]
chr5	GH05I109688	109688343	109697332	2.49	[{'connected_gene': 'MAN2A1', 'score': 550.77}, {'connected_gene': 'RN7SKP230', 'score': 11.39}, {'connected_gene': 'ENSG00000271849', 'score': 7.56}, {'connected_gene': 'LOC285638', 'score': 4.58}, {'connected_gene': 'GC05M109700', 'score': 0.44}]
chr5	GH05I109649	109649196	109650091	0.31	[{'connected_gene': 'MAN2A1', 'score': 12.73}, {'connected_gene': 'LOC105379118', 'score': 0.37}, {'connected_gene': 'PIR59063', 'score': 0.28}]
chr5	GH05I109654	109654550	109655001	0.31	[{'connected_gene': 'MAN2A1', 'score': 12.75}, {'connected_gene': 'LOC105379118', 'score': 0.39}, {'connected_gene': 'PIR59063', 'score': 0.26}]
chr5	GH05I109655	109655744	109657882	1.3	[{'connected_gene': 'MAN2A1', 'score': 16.89}, {'connected_gene': 'ENSG00000271849', 'score': 5.62}, {'connected_gene': 'LOC105379118', 'score': 0.44}, {'connected_gene': 'PIR59063', 'score': 0.26}]
chr5	GH05I109628	109628303	109631078	0.38	[{'connected_gene': 'LOC285638', 'score': 9.05}, {'connected_gene': 'PJA2', 'score': 5.57}, {'connected_gene': 'ENSG00000271849', 'score': 4.99}, {'connected_gene': 'MAN2A1', 'score': 4.9}, {'connected_gene': 'PIR59063', 'score': 0.37}, {'connected_gene': 'LOC105379118', 'score': 0.28}]
chr5	GH05I109863	109863491	109867260	1.04	[{'connected_gene': 'LOC285638', 'score': 5.75}, {'connected_gene': 'RN7SKP230', 'score': 5.33}, {'connected_gene': 'ENSG00000271849', 'score': 4.52}, {'connected_gene': 'GC05P109871', 'score': 0.44}, {'connected_gene': 'CT45B1P', 'score': 0.34}, {'connected_gene': 'MAN2A1', 'score': 0.1}]
chr5	GH05I109742	109742006	109745220	1.07	[{'connected_gene': 'RN7SKP230', 'score': 11.6}, {'connected_gene': 'MAN2A1', 'score': 11.14}, {'connected_gene': 'ENSG00000271849', 'score': 4.94}, {'connected_gene': 'GC05P109723', 'score': 0.37}, {'connected_gene': 'GC05M109796', 'score': 0.22}]
chr5	GH05I109697	109697400	109697601	0.56	[{'connected_gene': 'RN7SKP230', 'score': 0.77}, {'connected_gene': 'GC05M109700', 'score': 0.77}, {'connected_gene': 'MAN2A1', 'score': 0.44}]
chr5	GH05I109758	109758810	109759841	0.63	[{'connected_gene': 'RN7SKP230', 'score': 9.44}, {'connected_gene': 'ENSG00000271849', 'score': 4.74}, {'connected_gene': 'GC05P109723', 'score': 0.28}, {'connected_gene': 'GC05M109796', 'score': 0.26}, {'connected_gene': 'MAN2A1', 'score': 0.2}]
chr5	GH05I109739	109739280	109741649	0.8	[{'connected_gene': 'RN7SKP230', 'score': 9.94}, {'connected_gene': 'LOC285638', 'score': 5.49}, {'connected_gene': 'ENSG00000271849', 'score': 5.3}, {'connected_gene': 'GC05P109723', 'score': 0.37}, {'connected_gene': 'MAN2A1', 'score': 0.23}, {'connected_gene': 'GC05M109796', 'score': 0.21}]
chr5	GH05I109704	109704057	109710486	1.11	[{'connected_gene': 'RN7SKP230', 'score': 12.16}, {'connected_gene': 'LOC285638', 'score': 5.49}, {'connected_gene': 'ENSG00000271849', 'score': 5.12}, {'connected_gene': 'GC05M109698', 'score': 0.77}, {'connected_gene': 'GC05P109723', 'score': 0.37}, {'connected_gene': 'MAN2A1', 'score': 0.37}]
chr5	GH05I109837	109837760	109838602	0.46	[{'connected_gene': 'CT45B1P', 'score': 0.77}, {'connected_gene': 'GC05M109796', 'score': 0.28}, {'connected_gene': 'MAN2A1', 'score': 0.11}]
chr5	GH05I109849	109849130	109850016	0.31	[{'connected_gene': 'LINC01848', 'score': 11.03}, {'connected_gene': 'MAN2A1', 'score': 10.4}, {'connected_gene': 'LOC285638', 'score': 5.08}, {'connected_gene': 'ENSG00000271849', 'score': 4.56}, {'connected_gene': 'CT45B1P', 'score': 0.44}, {'connected_gene': 'GC05P109871', 'score': 0.34}]
chr5	GH05I109844	109844364	109845347	0.54	[{'connected_gene': 'LINC01848', 'score': 10.49}, {'connected_gene': 'MAN2A1', 'score': 10.13}, {'connected_gene': 'RN7SKP230', 'score': 7.94}, {'connected_gene': 'LOC285638', 'score': 5.47}, {'connected_gene': 'CT45B1P', 'score': 0.77}, {'connected_gene': 'GC05P109871', 'score': 0.31}]
chr5	GH05I109920	109920757	109923955	1.04	[{'connected_gene': 'LINC01848', 'score': 11.3}, {'connected_gene': 'MAN2A1', 'score': 1.28}, {'connected_gene': 'GC05P109911', 'score': 0.39}, {'connected_gene': 'PIR60171', 'score': 0.08}]
chr5	GH05I109856	109856221	109859101	0.74	[{'connected_gene': 'LINC01848', 'score': 11.0}, {'connected_gene': 'RN7SKP230', 'score': 6.4}, {'connected_gene': 'LOC285638', 'score': 5.44}, {'connected_gene': 'ENSG00000271849', 'score': 4.48}, {'connected_gene': 'GC05P109871', 'score': 0.39}, {'connected_gene': 'CT45B1P', 'score': 0.37}, {'connected_gene': 'MAN2A1', 'score': 0.1}]
chr5	GH05I109612	109612432	109612831	0.63	[{'connected_gene': 'PIR59063', 'score': 550.77}, {'connected_gene': 'MAN2A1', 'score': 12.51}, {'connected_gene': 'LOC285638', 'score': 4.32}, {'connected_gene': 'LOC105379118', 'score': 0.23}]
chr5	GH05I109748	109748600	109748801	0.31	[{'connected_gene': 'GC05P109723', 'score': 0.34}, {'connected_gene': 'GC05M109796', 'score': 0.23}, {'connected_gene': 'MAN2A1', 'score': 0.22}]