PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000228936	[[14978502, 14982396], [14993378, 14994087], [14995903, 14996429]]	[[14982304, 14982396], [14993378, 14994087], [14995903, 14996047]]
ENST00000430129	[[14982287, 14982396], [14994015, 14994087], [14995903, 14995996]]	[[14982363, 14982396], [14994015, 14994087], [14995903, 14995996]]
ENST00000544616	[[14982287, 14982396], [14995903, 14995996]]	[[14982363, 14982396], [14995903, 14995996]]
ENST00000420600	[[14993293, 14994087], [14995903, 14995996]]	[[14993358, 14994087], [14995903, 14995996]]
NM_021071	[[14982244, 14982396], [14993378, 14994087], [14995903, 14996413]]	[[14982304, 14982396], [14993378, 14994087], [14995903, 14996047]]

Promoter

Chrom	Start	End	Description
chr12	14996355	14996441	CAGE_peak_1_at_ART4_5end
chr12	14996451	14996472	CAGE_peak_2_at_ART4_5end
chr12	14996486	14996500	CAGE_peak_3_at_ART4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I014780	14780601	14780800	0.31	[{'connected_gene': 'WBP11', 'score': 12.57}, {'connected_gene': 'ART4', 'score': 10.61}, {'connected_gene': 'ENSG00000256339', 'score': 10.03}, {'connected_gene': 'SMCO3', 'score': 10.0}, {'connected_gene': 'PDE6H', 'score': 8.93}, {'connected_gene': 'C12orf60', 'score': 0.77}, {'connected_gene': 'GC12P014775', 'score': 0.44}, {'connected_gene': 'PIR36886', 'score': 0.44}]
chr12	GH12I014883	14883386	14886556	1.92	[{'connected_gene': 'MGP', 'score': 550.77}, {'connected_gene': 'ENSG00000256339', 'score': 36.62}, {'connected_gene': 'ERP27', 'score': 29.78}, {'connected_gene': 'PDE6H', 'score': 15.64}, {'connected_gene': 'ART4', 'score': 11.51}, {'connected_gene': 'SMCO3', 'score': 10.51}, {'connected_gene': 'ARHGDIB', 'score': 10.39}, {'connected_gene': 'HIST4H4', 'score': 10.36}, {'connected_gene': 'H2AFJ', 'score': 10.36}, {'connected_gene': 'WBP11', 'score': 10.14}, {'connected_gene': 'C12orf60', 'score': 10.11}, {'connected_gene': 'GC12M014862', 'score': 0.39}]
chr12	GH12I014999	14999507	14999684	0.38	[{'connected_gene': 'ART4', 'score': 11.73}, {'connected_gene': 'PDE6H', 'score': 11.34}, {'connected_gene': 'ENSG00000256339', 'score': 11.12}, {'connected_gene': 'ARHGDIB', 'score': 11.11}, {'connected_gene': 'ERP27', 'score': 10.53}, {'connected_gene': 'SMCO3', 'score': 10.49}, {'connected_gene': 'C12orf60', 'score': 9.95}, {'connected_gene': 'MGP', 'score': 9.69}, {'connected_gene': 'LINC01489', 'score': 0.77}, {'connected_gene': 'LOC105369670', 'score': 0.44}]
chr12	GH12I014846	14846001	14846739	0.58	[{'connected_gene': 'ART4', 'score': 0.77}, {'connected_gene': 'GC12M014862', 'score': 0.31}, {'connected_gene': 'C12orf60', 'score': 0.21}]
chr12	GH12I014980	14980773	14984199	0.99	[{'connected_gene': 'ART4', 'score': 11.22}, {'connected_gene': 'ENSG00000256339', 'score': 10.74}, {'connected_gene': 'ERP27', 'score': 10.2}, {'connected_gene': 'WBP11', 'score': 10.15}, {'connected_gene': 'C12orf60', 'score': 10.14}, {'connected_gene': 'HIST4H4', 'score': 9.94}, {'connected_gene': 'H2AFJ', 'score': 9.86}, {'connected_gene': 'SMCO3', 'score': 9.51}, {'connected_gene': 'ARHGDIB', 'score': 7.16}, {'connected_gene': 'PDE6H', 'score': 5.62}, {'connected_gene': 'GC12P014973', 'score': 0.44}, {'connected_gene': 'GC12P014974', 'score': 0.44}, {'connected_gene': 'LOC105369670', 'score': 0.44}]
chr12	GH12I014931	14931507	14932649	0.2	[{'connected_gene': 'ART4', 'score': 11.47}, {'connected_gene': 'HIST4H4', 'score': 11.04}, {'connected_gene': 'MGP', 'score': 10.79}, {'connected_gene': 'C12orf60', 'score': 10.65}, {'connected_gene': 'PDE6H', 'score': 10.29}, {'connected_gene': 'ENSG00000256339', 'score': 9.51}, {'connected_gene': 'ERP27', 'score': 0.44}, {'connected_gene': 'GC12M014903', 'score': 0.31}]
chr12	GH12I014945	14945763	14964864	2.65	[{'connected_gene': 'ARHGDIB', 'score': 572.66}, {'connected_gene': 'ERP27', 'score': 16.91}, {'connected_gene': 'PDE6H', 'score': 16.09}, {'connected_gene': 'WBP11', 'score': 12.28}, {'connected_gene': 'ART4', 'score': 11.35}, {'connected_gene': 'HIST4H4', 'score': 10.69}, {'connected_gene': 'H2AFJ', 'score': 10.69}, {'connected_gene': 'SMCO3', 'score': 10.41}, {'connected_gene': 'C12orf60', 'score': 10.32}, {'connected_gene': 'ENSG00000256339', 'score': 10.26}, {'connected_gene': 'MGP', 'score': 10.15}, {'connected_gene': 'PLBD1', 'score': 2.18}, {'connected_gene': 'LOC105369670', 'score': 0.29}]
chr12	GH12I014896	14896047	14897378	0.91	[{'connected_gene': 'ERP27', 'score': 43.47}, {'connected_gene': 'ART4', 'score': 11.36}, {'connected_gene': 'SMCO3', 'score': 10.16}, {'connected_gene': 'ENSG00000256339', 'score': 10.16}, {'connected_gene': 'PDE6H', 'score': 9.63}, {'connected_gene': 'GC12M014889', 'score': 0.44}, {'connected_gene': 'GC12M014903', 'score': 0.39}, {'connected_gene': 'C12orf60', 'score': 0.14}]
chr12	GH12I014892	14892472	14894388	0.58	[{'connected_gene': 'ERP27', 'score': 39.58}, {'connected_gene': 'ART4', 'score': 12.24}, {'connected_gene': 'ENSG00000256339', 'score': 9.93}, {'connected_gene': 'SMCO3', 'score': 9.9}, {'connected_gene': 'GC12M014889', 'score': 0.77}, {'connected_gene': 'GC12M014903', 'score': 0.39}, {'connected_gene': 'C12orf60', 'score': 0.14}]
chr12	GH12I014834	14834004	14838259	0.99	[{'connected_gene': 'ERP27', 'score': 29.75}, {'connected_gene': 'ENSG00000256339', 'score': 24.73}, {'connected_gene': 'ART4', 'score': 0.44}, {'connected_gene': 'GC12P014829', 'score': 0.44}, {'connected_gene': 'C12orf60', 'score': 0.23}]
chr12	GH12I015001	15001687	15002394	0.31	[{'connected_gene': 'LINC01489', 'score': 550.77}, {'connected_gene': 'ART4', 'score': 12.04}, {'connected_gene': 'PDE6H', 'score': 10.92}, {'connected_gene': 'ENSG00000256339', 'score': 10.71}, {'connected_gene': 'ARHGDIB', 'score': 10.63}, {'connected_gene': 'SMCO3', 'score': 10.28}, {'connected_gene': 'H2AFJ', 'score': 10.16}, {'connected_gene': 'HIST4H4', 'score': 10.16}, {'connected_gene': 'MGP', 'score': 10.11}, {'connected_gene': 'C12orf60', 'score': 10.1}, {'connected_gene': 'GC12M015095', 'score': 0.16}]
chr12	GH12I015000	15000087	15000236	0.31	[{'connected_gene': 'LINC01489', 'score': 550.77}, {'connected_gene': 'ART4', 'score': 11.73}, {'connected_gene': 'PDE6H', 'score': 11.34}, {'connected_gene': 'ENSG00000256339', 'score': 11.12}, {'connected_gene': 'ARHGDIB', 'score': 11.11}, {'connected_gene': 'ERP27', 'score': 10.53}, {'connected_gene': 'SMCO3', 'score': 10.49}, {'connected_gene': 'C12orf60', 'score': 9.95}, {'connected_gene': 'MGP', 'score': 9.69}, {'connected_gene': 'LOC105369670', 'score': 0.39}]
chr12	GH12I014853	14853777	14855208	0.66	[{'connected_gene': 'ENSG00000256339', 'score': 29.97}, {'connected_gene': 'PDE6H', 'score': 5.77}, {'connected_gene': 'ART4', 'score': 0.39}, {'connected_gene': 'GC12M014862', 'score': 0.34}, {'connected_gene': 'C12orf60', 'score': 0.2}]
chr12	GH12I014848	14848834	14850396	0.46	[{'connected_gene': 'ENSG00000256339', 'score': 30.38}, {'connected_gene': 'ART4', 'score': 0.44}, {'connected_gene': 'GC12M014862', 'score': 0.31}, {'connected_gene': 'C12orf60', 'score': 0.21}]
chr12	GH12I014840	14840628	14844210	1.89	[{'connected_gene': 'ENSG00000256339', 'score': 575.24}, {'connected_gene': 'ART4', 'score': 553.73}, {'connected_gene': 'GC12M014843', 'score': 550.77}, {'connected_gene': 'GC12M014844', 'score': 550.77}, {'connected_gene': 'ERP27', 'score': 30.38}, {'connected_gene': 'H2AFJ', 'score': 4.07}, {'connected_gene': 'SMCO3', 'score': 2.03}, {'connected_gene': 'C12orf60', 'score': 0.22}]
chr12	GH12I014845	14845201	14845800	0.93	[{'connected_gene': 'ENSG00000261324', 'score': 14.13}, {'connected_gene': 'HIST4H4', 'score': 12.65}, {'connected_gene': 'ATF7IP', 'score': 12.27}, {'connected_gene': 'H2AFJ', 'score': 11.16}, {'connected_gene': 'ART4', 'score': 0.77}, {'connected_gene': 'GC12M014862', 'score': 0.31}, {'connected_gene': 'C12orf60', 'score': 0.21}]