PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000244930	[[61976139, 61976258], [61977884, 61978072], [61981197, 61981408]]	[[61976203, 61976258], [61977884, 61978072], [61981197, 61981242]]
NM_002407	[[61976139, 61976258], [61977884, 61978072], [61981197, 61981411]]	[[61976203, 61976258], [61977884, 61978072], [61981197, 61981242]]

Promoter

Chrom	Start	End	Description
chr11	61976137	61976152	CAGE_peak_1_at_SCGB2A1_5end
chr11	61976154	61976157	CAGE_peak_2_at_SCGB2A1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I062311	62311016	62312000	1.04	[{'connected_gene': 'ASRGL1', 'score': 21.87}, {'connected_gene': 'SCGB2A1', 'score': 4.89}, {'connected_gene': 'SCGB1D4', 'score': 0.39}, {'connected_gene': 'NPM1P35', 'score': 0.37}]
chr11	GH11I062270	62270109	62270168	0.61	[{'connected_gene': 'SCGB2A2', 'score': 550.77}, {'connected_gene': 'SCGB2A1', 'score': 4.71}, {'connected_gene': 'SCGB1D4', 'score': 0.31}]
chr11	GH11I062208	62208624	62208683	0.76	[{'connected_gene': 'SCGB2A1', 'score': 550.77}, {'connected_gene': 'SCGB1D1', 'score': 0.37}]
chr11	GH11I062412	62412828	62414422	0.31	[{'connected_gene': 'INCENP', 'score': 5.89}, {'connected_gene': 'ASRGL1', 'score': 4.94}, {'connected_gene': 'SCGB2A1', 'score': 4.58}, {'connected_gene': 'SCGB1A1', 'score': 0.44}, {'connected_gene': 'LOC102723765', 'score': 0.39}]
chr11	GH11I062410	62410487	62412778	0.43	[{'connected_gene': 'INCENP', 'score': 5.88}, {'connected_gene': 'ASRGL1', 'score': 5.29}, {'connected_gene': 'SCGB2A1', 'score': 4.51}, {'connected_gene': 'SCGB1A1', 'score': 0.44}, {'connected_gene': 'LOC102723765', 'score': 0.37}]
chr11	GH11I062394	62394449	62403278	1.71	[{'connected_gene': 'NXF1', 'score': 20.35}, {'connected_gene': 'CPSF7', 'score': 19.58}, {'connected_gene': 'CSKMT', 'score': 18.95}, {'connected_gene': 'ASRGL1', 'score': 18.86}, {'connected_gene': 'GANAB', 'score': 17.67}, {'connected_gene': 'SNHG1', 'score': 17.03}, {'connected_gene': 'EML3', 'score': 16.2}, {'connected_gene': 'RN7SL23P', 'score': 15.64}, {'connected_gene': 'INTS5', 'score': 13.82}, {'connected_gene': 'STX5', 'score': 13.74}, {'connected_gene': 'MTA2', 'score': 12.84}, {'connected_gene': 'TUT1', 'score': 11.66}, {'connected_gene': 'TAF6L', 'score': 11.58}, {'connected_gene': 'LOC105369332', 'score': 11.5}, {'connected_gene': 'TMEM179B', 'score': 10.34}, {'connected_gene': 'UBXN1', 'score': 10.16}, {'connected_gene': 'SCGB2A1', 'score': 5.74}, {'connected_gene': 'INCENP', 'score': 5.72}, {'connected_gene': 'DAGLA', 'score': 4.23}, {'connected_gene': 'ENSG00000255126', 'score': 0.44}, {'connected_gene': 'SCGB1A1', 'score': 0.44}]
chr11	GH11I062386	62386229	62386358	0.31	[{'connected_gene': 'LOC102723765', 'score': 11.08}, {'connected_gene': 'ENSG00000250659', 'score': 11.0}, {'connected_gene': 'ENSG00000257058', 'score': 11.0}, {'connected_gene': 'AHNAK', 'score': 10.99}, {'connected_gene': 'EEF1G', 'score': 10.63}, {'connected_gene': 'ENSG00000255508', 'score': 10.62}, {'connected_gene': 'TUT1', 'score': 10.62}, {'connected_gene': 'SCGB2A1', 'score': 5.4}, {'connected_gene': 'GC11P062385', 'score': 0.77}, {'connected_gene': 'PIR59932', 'score': 0.77}, {'connected_gene': 'ENSG00000255126', 'score': 0.44}, {'connected_gene': 'ASRGL1', 'score': 0.25}]