PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000367889	[[165600097, 165600530], [165619077, 165619201], [165620250, 165620324], [165621214, 165621272], [165623515, 165623588], [165624604, 165624857]]	[[165619084, 165619201], [165620250, 165620324], [165621214, 165621272], [165623515, 165623588], [165624604, 165624741]]
ENST00000367888	[[165600449, 165600530], [165619077, 165619201], [165620250, 165620324], [165621214, 165621272], [165623515, 165623588], [165630665, 165631033]]	[[165619084, 165619201], [165620250, 165620324], [165621214, 165621272], [165623515, 165623588], [165630665, 165630733]]
ENST00000461308	[[165600462, 165600530], [165619077, 165620011]]	None
ENST00000460632	[[165600473, 165600530], [165606011, 165606386]]	None
ENST00000495447	[[165600475, 165600530], [165618991, 165619201], [165620250, 165620324], [165621214, 165621272], [165623515, 165623588], [165624604, 165624854]]	None
ENST00000367885	[[165600476, 165600530], [165601467, 165601511], [165619077, 165619201], [165620250, 165620324], [165621214, 165621272], [165623515, 165623588], [165624604, 165624857]]	[[165601476, 165601511], [165619077, 165619201], [165620250, 165620324], [165621214, 165621272], [165623515, 165623588], [165624604, 165624741]]
ENST00000367884	[[165600491, 165600529], [165604963, 165605059], [165619077, 165619201], [165620250, 165620324], [165621214, 165621272], [165623515, 165623588], [165624604, 165624857]]	[[165619084, 165619201], [165620250, 165620324], [165621214, 165621272], [165623515, 165623588], [165624604, 165624741]]
ENST00000488688	[[165600494, 165600530], [165619077, 165619201], [165620250, 165620831]]	None
ENST00000367883	[[165601299, 165601379], [165601467, 165601511], [165619077, 165619201], [165620250, 165620324], [165621214, 165621272], [165623515, 165623588], [165624604, 165624857]]	[[165601476, 165601511], [165619077, 165619201], [165620250, 165620324], [165621214, 165621272], [165623515, 165623588], [165624604, 165624741]]
ENST00000367886	[[165601476, 165601511], [165619077, 165619201], [165620250, 165620324], [165621214, 165621272], [165623515, 165623588], [165624604, 165624853]]	[[165601476, 165601511], [165619077, 165619201], [165620250, 165620324], [165621214, 165621272], [165623515, 165623588], [165624604, 165624741]]
ENST00000461759	[[165614897, 165617132], [165617686, 165617907]]	None
ENST00000609263	[[165618028, 165621129]]	None
ENST00000477450	[[165619074, 165619201], [165620250, 165620324], [165621214, 165621272], [165622933, 165623038]]	None
ENST00000494074	[[165623069, 165623588], [165624604, 165624857]]	None
NM_004528	[[165600109, 165600530], [165619077, 165619201], [165620250, 165620324], [165621214, 165621272], [165623515, 165623588], [165624604, 165625373]]	[[165619084, 165619201], [165620250, 165620324], [165621214, 165621272], [165623515, 165623588], [165624604, 165624741]]

Promoter

Chrom	Start	End	Description
chr1	165600083	165600134	CAGE_peak_2_at_MGST3_5end
chr1	165600436	165600508	CAGE_peak_1_at_MGST3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I165398	165398084	165398233	0.38	[{'connected_gene': 'RXRG', 'score': 10.75}, {'connected_gene': 'MGST3', 'score': 10.4}, {'connected_gene': 'LMX1A', 'score': 0.26}, {'connected_gene': 'GC01M165392', 'score': 0.26}]
chr1	GH01I165538	165538770	165540314	0.72	[{'connected_gene': 'LRRC52', 'score': 10.84}, {'connected_gene': 'RXRG', 'score': 10.4}, {'connected_gene': 'MGST3', 'score': 5.76}, {'connected_gene': 'LOC105371565', 'score': 0.77}, {'connected_gene': 'LOC400794', 'score': 0.26}]
chr1	GH01I165593	165593044	165593213	0.65	[{'connected_gene': 'MGST3', 'score': 11.06}, {'connected_gene': 'RXRG', 'score': 10.17}, {'connected_gene': 'LMX1A', 'score': 10.01}, {'connected_gene': 'TRK-CTT13-1', 'score': 0.77}, {'connected_gene': 'LOC400794', 'score': 0.39}]
chr1	GH01I165601	165601764	165602001	0.93	[{'connected_gene': 'MGST3', 'score': 17.49}, {'connected_gene': 'RXRG', 'score': 9.73}, {'connected_gene': 'ENSG00000236206', 'score': 0.77}]
chr1	GH01I165392	165392938	165393773	1.15	[{'connected_gene': 'MGST3', 'score': 11.39}, {'connected_gene': 'LMX1A', 'score': 0.28}, {'connected_gene': 'GC01M165392', 'score': 0.25}]
chr1	GH01I165629	165629812	165634437	2.3	[{'connected_gene': 'MGST3', 'score': 593.92}, {'connected_gene': 'LOC284685', 'score': 50.62}, {'connected_gene': 'LRRC52', 'score': 11.84}, {'connected_gene': 'ALDH9A1', 'score': 5.89}, {'connected_gene': 'GC01M165662', 'score': 0.29}, {'connected_gene': 'ENSG00000206990', 'score': 0.29}]
chr1	GH01I165634	165634602	165635400	0.69	[{'connected_gene': 'MGST3', 'score': 7.92}, {'connected_gene': 'ALDH9A1', 'score': 6.12}, {'connected_gene': 'GC01M165662', 'score': 0.31}, {'connected_gene': 'ENSG00000206990', 'score': 0.31}]
chr1	GH01I165705	165705537	165705846	0.26	[{'connected_gene': 'MGST3', 'score': 11.88}, {'connected_gene': 'LOC105371581', 'score': 0.77}, {'connected_gene': 'LOC440700', 'score': 0.44}, {'connected_gene': 'ALDH9A1', 'score': 0.44}]
chr1	GH01I165644	165644780	165647931	0.98	[{'connected_gene': 'MGST3', 'score': 21.02}, {'connected_gene': 'GC01M165662', 'score': 0.37}, {'connected_gene': 'ENSG00000206990', 'score': 0.37}]
chr1	GH01I165636	165636209	165638664	1.05	[{'connected_gene': 'MGST3', 'score': 21.8}, {'connected_gene': 'GC01M165662', 'score': 0.31}, {'connected_gene': 'ENSG00000206990', 'score': 0.31}]
chr1	GH01I165695	165695564	165699265	2.05	[{'connected_gene': 'ALDH9A1', 'score': 582.54}, {'connected_gene': 'LOC440700', 'score': 550.77}, {'connected_gene': 'LOC284685', 'score': 23.64}, {'connected_gene': 'MGST3', 'score': 11.86}, {'connected_gene': 'UCK2', 'score': 9.99}, {'connected_gene': 'GC01M165672', 'score': 0.37}]
chr1	GH01I165685	165685725	165687566	0.6	[{'connected_gene': 'ALDH9A1', 'score': 19.88}, {'connected_gene': 'MGST3', 'score': 11.38}, {'connected_gene': 'GC01M165672', 'score': 0.44}, {'connected_gene': 'LOC440700', 'score': 0.39}]
chr1	GH01I165594	165594740	165595902	0.31	[{'connected_gene': 'TRK-CTT13-1', 'score': 550.77}, {'connected_gene': 'MGST3', 'score': 19.35}, {'connected_gene': 'LOC400794', 'score': 0.39}]
chr1	GH01I165670	165670801	165672026	0.2	[{'connected_gene': 'RPS13P1', 'score': 550.77}, {'connected_gene': 'MGST3', 'score': 16.07}, {'connected_gene': 'RPL21P27', 'score': 0.77}, {'connected_gene': 'ALDH9A1', 'score': 0.31}]
chr1	GH01I165597	165597450	165599412	1.51	[{'connected_gene': 'ENSG00000236206', 'score': 562.09}, {'connected_gene': 'TRK-CTT13-1', 'score': 550.77}, {'connected_gene': 'LOC284685', 'score': 17.9}, {'connected_gene': 'LRRC52', 'score': 8.49}, {'connected_gene': 'MGST3', 'score': 7.05}]