PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000264888	[[76922427, 76924852], [76925961, 76926046], [76927300, 76927427], [76928538, 76928641]]	[[76924750, 76924852], [76925961, 76926046], [76927300, 76927427], [76928538, 76928602]]
NM_002416	[[76922494, 76924852], [76925961, 76926046], [76927300, 76927427], [76928538, 76928676]]	[[76924750, 76924852], [76925961, 76926046], [76927300, 76927427], [76928538, 76928602]]

Promoter

Chrom	Start	End	Description
chr4	76928654	76928668	CAGE_peak_1_at_CXCL9_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I076037	76036136	76036195	0.73	[{'connected_gene': 'RPL36P8', 'score': 550.77}, {'connected_gene': 'CXCL11', 'score': 550.44}, {'connected_gene': 'CXCL9', 'score': 11.86}, {'connected_gene': 'ART3', 'score': 11.74}, {'connected_gene': 'GC04M075923', 'score': 0.39}]
chr4	GH04I076036	76036801	76037000	0.31	[{'connected_gene': 'RPL36P8', 'score': 550.77}, {'connected_gene': 'ART3', 'score': 68.68}, {'connected_gene': 'NAAA', 'score': 23.55}, {'connected_gene': 'CXCL9', 'score': 11.95}, {'connected_gene': 'CXCL11', 'score': 0.77}, {'connected_gene': 'GC04M075923', 'score': 0.39}]
chr4	GH04I076042	76042351	76042517	0.49	[{'connected_gene': 'CXCL11', 'score': 574.24}, {'connected_gene': 'CXCL9', 'score': 72.9}, {'connected_gene': 'CXCL10', 'score': 57.96}, {'connected_gene': 'NAAA', 'score': 2.05}, {'connected_gene': 'ART3', 'score': 0.29}, {'connected_gene': 'GC04P076101', 'score': 0.22}]
chr4	GH04I076584	76584279	76597915	2.06	[{'connected_gene': 'SHROOM3', 'score': 14.17}, {'connected_gene': 'RNU6-145P', 'score': 10.72}, {'connected_gene': 'CXCL9', 'score': 4.55}, {'connected_gene': 'FAM47E', 'score': 4.42}, {'connected_gene': 'SOWAHB', 'score': 1.5}, {'connected_gene': 'GC04P076578', 'score': 0.39}, {'connected_gene': 'ENSG00000231335', 'score': 0.25}]
chr4	GH04I075901	75901332	75902002	1.04	[{'connected_gene': 'PPEF2', 'score': 550.77}, {'connected_gene': 'NAAA', 'score': 30.92}, {'connected_gene': 'CXCL10', 'score': 3.55}, {'connected_gene': 'CXCL9', 'score': 3.17}, {'connected_gene': 'CXCL11', 'score': 2.78}, {'connected_gene': 'THAP6', 'score': 1.46}, {'connected_gene': 'RCHY1', 'score': 1.45}, {'connected_gene': 'LOC105377285', 'score': 0.34}]
chr4	GH04I076089	76089277	76091385	1.44	[{'connected_gene': 'NUP54', 'score': 38.7}, {'connected_gene': 'CXCL10', 'score': 12.48}, {'connected_gene': 'CXCL9', 'score': 12.23}, {'connected_gene': 'SDAD1', 'score': 11.07}, {'connected_gene': 'ART3', 'score': 10.99}, {'connected_gene': 'NAAA', 'score': 8.88}, {'connected_gene': 'CXCL11', 'score': 1.56}, {'connected_gene': 'GC04P076101', 'score': 0.39}]
chr4	GH04I076088	76088597	76088729	0.39	[{'connected_gene': 'CXCL9', 'score': 11.12}, {'connected_gene': 'SDAD1', 'score': 11.07}, {'connected_gene': 'NUP54', 'score': 11.01}, {'connected_gene': 'ART3', 'score': 10.99}, {'connected_gene': 'CXCL10', 'score': 10.94}, {'connected_gene': 'GC04P076101', 'score': 0.39}, {'connected_gene': 'CXCL11', 'score': 0.25}]
chr4	GH04I076087	76087001	76087457	1.12	[{'connected_gene': 'CXCL9', 'score': 11.12}, {'connected_gene': 'SDAD1', 'score': 11.07}, {'connected_gene': 'NUP54', 'score': 11.0}, {'connected_gene': 'ART3', 'score': 10.99}, {'connected_gene': 'CXCL10', 'score': 10.95}, {'connected_gene': 'GC04P076101', 'score': 0.39}, {'connected_gene': 'CXCL11', 'score': 0.25}]
chr4	GH04I075916	75916200	75916640	0.84	[{'connected_gene': 'CXCL9', 'score': 10.01}, {'connected_gene': 'ART3', 'score': 10.01}, {'connected_gene': 'PPEF2', 'score': 0.39}, {'connected_gene': 'PIR50646', 'score': 0.34}, {'connected_gene': 'NAAA', 'score': 0.34}, {'connected_gene': 'GC04M075942', 'score': 0.34}]
chr4	GH04I075909	75909307	75909868	0.31	[{'connected_gene': 'CXCL9', 'score': 10.46}, {'connected_gene': 'ART3', 'score': 9.81}, {'connected_gene': 'PPEF2', 'score': 8.68}, {'connected_gene': 'PIR50646', 'score': 0.29}, {'connected_gene': 'GC04M075942', 'score': 0.29}]
chr4	GH04I076007	76007499	76007558	0.76	[{'connected_gene': 'CXCL9', 'score': 550.77}, {'connected_gene': 'ART3', 'score': 0.77}, {'connected_gene': 'GC04M075923', 'score': 0.37}]
chr4	GH04I076029	76029377	76029603	0.39	[{'connected_gene': 'CXCL9', 'score': 46.9}, {'connected_gene': 'CXCL10', 'score': 36.97}, {'connected_gene': 'CXCL11', 'score': 26.01}, {'connected_gene': 'SDAD1', 'score': 11.33}, {'connected_gene': 'ART3', 'score': 5.96}, {'connected_gene': 'NAAA', 'score': 1.91}, {'connected_gene': 'GC04M075923', 'score': 0.77}, {'connected_gene': 'RPL36P8', 'score': 0.44}]
chr4	GH04I076072	76072307	76073694	0.38	[{'connected_gene': 'ART3', 'score': 21.34}, {'connected_gene': 'CXCL9', 'score': 11.43}, {'connected_gene': 'SDAD1', 'score': 11.01}, {'connected_gene': 'CXCL10', 'score': 11.0}, {'connected_gene': 'LOC101928809', 'score': 11.0}, {'connected_gene': 'PPEF2', 'score': 10.5}, {'connected_gene': 'GC04P076101', 'score': 0.31}, {'connected_gene': 'CXCL11', 'score': 0.29}]
chr4	GH04I076074	76074664	76074723	0.5	[{'connected_gene': 'ART3', 'score': 561.44}, {'connected_gene': 'CXCL9', 'score': 11.43}, {'connected_gene': 'SDAD1', 'score': 11.01}, {'connected_gene': 'LOC101928809', 'score': 11.0}, {'connected_gene': 'CXCL10', 'score': 10.98}, {'connected_gene': 'PPEF2', 'score': 10.5}, {'connected_gene': 'GC04P076101', 'score': 0.31}, {'connected_gene': 'CXCL11', 'score': 0.29}]
chr4	GH04I076027	76027868	76029000	1.05	[{'connected_gene': 'ART3', 'score': 61.73}, {'connected_gene': 'CXCL9', 'score': 27.37}, {'connected_gene': 'CXCL10', 'score': 19.98}, {'connected_gene': 'CXCL11', 'score': 18.72}, {'connected_gene': 'SDAD1', 'score': 11.33}, {'connected_gene': 'NAAA', 'score': 2.53}, {'connected_gene': 'GC04M075923', 'score': 0.77}, {'connected_gene': 'RPL36P8', 'score': 0.44}]
chr4	GH04I076059	76059390	76060560	0.86	[{'connected_gene': 'ART3', 'score': 75.17}, {'connected_gene': 'CXCL10', 'score': 32.82}, {'connected_gene': 'CXCL9', 'score': 29.59}, {'connected_gene': 'NAAA', 'score': 26.79}, {'connected_gene': 'CXCL11', 'score': 18.55}, {'connected_gene': 'SDAD1', 'score': 11.76}, {'connected_gene': 'LOC101928809', 'score': 11.44}, {'connected_gene': 'GC04P076101', 'score': 0.26}]
chr4	GH04I075845	75845762	75845923	0.33	[{'connected_gene': 'CXCL10', 'score': 27.54}, {'connected_gene': 'CXCL9', 'score': 27.3}, {'connected_gene': 'CXCL11', 'score': 19.21}, {'connected_gene': 'NAAA', 'score': 1.86}, {'connected_gene': 'GC04P075831', 'score': 0.37}, {'connected_gene': 'LOC105377285', 'score': 0.29}]
chr4	GH04I076055	76055188	76055337	0.74	[{'connected_gene': 'NAAA', 'score': 26.0}, {'connected_gene': 'CXCL10', 'score': 11.8}, {'connected_gene': 'CXCL9', 'score': 11.26}, {'connected_gene': 'SDAD1', 'score': 11.17}, {'connected_gene': 'ART3', 'score': 11.08}, {'connected_gene': 'CXCL11', 'score': 0.39}, {'connected_gene': 'GC04P076101', 'score': 0.25}]
chr4	GH04I076561	76561396	76564992	1.15	[{'connected_gene': 'RNU6-145P', 'score': 11.13}, {'connected_gene': 'ENSG00000233860', 'score': 10.1}, {'connected_gene': 'NAAA', 'score': 6.51}, {'connected_gene': 'CXCL9', 'score': 5.04}, {'connected_gene': 'MIR4450', 'score': 0.39}, {'connected_gene': 'GC04M076533', 'score': 0.29}, {'connected_gene': 'SHROOM3', 'score': 0.13}]
chr4	GH04I076579	76579361	76581977	0.9	[{'connected_gene': 'GC04P076578', 'score': 550.77}, {'connected_gene': 'SHROOM3', 'score': 25.1}, {'connected_gene': 'RNU6-145P', 'score': 10.96}, {'connected_gene': 'ENSG00000233860', 'score': 10.45}, {'connected_gene': 'CXCL9', 'score': 4.67}, {'connected_gene': 'ENSG00000231335', 'score': 0.22}]
chr4	GH04I076028	76027395	76027509	0.26	[{'connected_gene': 'GC04M075923', 'score': 550.77}, {'connected_gene': 'ART3', 'score': 61.73}, {'connected_gene': 'CXCL10', 'score': 23.77}, {'connected_gene': 'CXCL9', 'score': 20.43}, {'connected_gene': 'CXCL11', 'score': 19.68}, {'connected_gene': 'NUP54', 'score': 9.84}, {'connected_gene': 'NAAA', 'score': 1.82}, {'connected_gene': 'RPL36P8', 'score': 0.44}]