PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
NM_001004334	[[36481492, 36487414], [36489133, 36489280], [36489815, 36489921], [36490586, 36490725], [36490915, 36491154], [36491473, 36491583], [36491958, 36492027], [36492860, 36493096], [36493515, 36493603], [36495299, 36495408], [36498878, 36499693]]	[[36482347, 36487414], [36489133, 36489280], [36489815, 36489921], [36490586, 36490725], [36490915, 36491154], [36491473, 36491583], [36491958, 36492027], [36492860, 36493096], [36493515, 36493603], [36495299, 36495408], [36498878, 36499672]]

Promoter

Chrom	Start	End	Description
chr17	36499833	36499844	CAGE_peak_1_at_GPR179_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr17	GH17I038348	38348978	38349600	1.07	[{'connected_gene': 'GPR179', 'score': 11.97}, {'connected_gene': 'ARHGAP23', 'score': 11.58}, {'connected_gene': 'GC17P038345', 'score': 0.77}, {'connected_gene': 'PIR56504', 'score': 0.77}]
chr17	GH17I038320	38320090	38321717	0.65	[{'connected_gene': 'GPR179', 'score': 12.35}, {'connected_gene': 'SOCS7', 'score': 12.0}, {'connected_gene': 'MRPL45', 'score': 7.89}, {'connected_gene': 'PIR49079', 'score': 0.34}, {'connected_gene': 'GC17P038300', 'score': 0.34}]
chr17	GH17I038322	38322238	38322447	0.46	[{'connected_gene': 'GPR179', 'score': 12.35}, {'connected_gene': 'SOCS7', 'score': 12.02}, {'connected_gene': 'MRPL45', 'score': 6.72}, {'connected_gene': 'PIR49079', 'score': 0.34}, {'connected_gene': 'GC17P038300', 'score': 0.34}]
chr17	GH17I038324	38322058	38322207	0.31	[{'connected_gene': 'GPR179', 'score': 12.35}, {'connected_gene': 'SOCS7', 'score': 12.02}, {'connected_gene': 'PIR49079', 'score': 0.34}, {'connected_gene': 'GC17P038300', 'score': 0.34}, {'connected_gene': 'MRPL45', 'score': 0.31}]
chr17	GH17I038333	38333778	38333927	0.74	[{'connected_gene': 'GPR179', 'score': 0.44}, {'connected_gene': 'PIR49079', 'score': 0.29}, {'connected_gene': 'GC17P038300', 'score': 0.29}]
chr17	GH17I038341	38341498	38341647	0.69	[{'connected_gene': 'GPR179', 'score': 0.77}, {'connected_gene': 'PIR49079', 'score': 0.26}, {'connected_gene': 'GC17P038300', 'score': 0.26}]
chr17	GH17I038323	38323819	38325860	0.79	[{'connected_gene': 'SOCS7', 'score': 12.64}, {'connected_gene': 'MRPL45', 'score': 9.41}, {'connected_gene': 'TBC1D3', 'score': 7.27}, {'connected_gene': 'GPR179', 'score': 0.37}, {'connected_gene': 'PIR49079', 'score': 0.31}, {'connected_gene': 'GC17P038300', 'score': 0.31}]
chr17	GH17I038350	38350577	38353321	2.06	[{'connected_gene': 'SOCS7', 'score': 550.77}, {'connected_gene': 'PIR56504', 'score': 550.77}, {'connected_gene': 'GPR179', 'score': 16.48}, {'connected_gene': 'ARHGAP23', 'score': 11.58}]
chr17	GH17I038327	38327138	38327287	0.31	[{'connected_gene': 'SOCS7', 'score': 12.67}, {'connected_gene': 'GPR179', 'score': 0.37}, {'connected_gene': 'PIR49079', 'score': 0.31}, {'connected_gene': 'GC17P038300', 'score': 0.31}]
chr17	GH17I038326	38326677	38327113	0.31	[{'connected_gene': 'SOCS7', 'score': 12.64}, {'connected_gene': 'GPR179', 'score': 0.37}, {'connected_gene': 'PIR49079', 'score': 0.31}, {'connected_gene': 'GC17P038300', 'score': 0.31}]
chr17	GH17I038419	38419617	38423178	1.31	[{'connected_gene': 'GC17M038423', 'score': 550.77}, {'connected_gene': 'PIR51176', 'score': 550.77}, {'connected_gene': 'GC17P038497', 'score': 550.77}, {'connected_gene': 'GPR179', 'score': 10.46}, {'connected_gene': 'SRCIN1', 'score': 3.86}, {'connected_gene': 'SOCS7', 'score': 2.43}, {'connected_gene': 'ARHGAP23', 'score': 2.05}]
chr17	GH17I038600	38600370	38603582	1.55	[{'connected_gene': 'ENSG00000274996', 'score': 550.77}, {'connected_gene': 'GC17P038603', 'score': 550.77}, {'connected_gene': 'LOC105371762', 'score': 18.76}, {'connected_gene': 'CDK12', 'score': 18.37}, {'connected_gene': 'MED1', 'score': 12.12}, {'connected_gene': 'RPL19', 'score': 10.22}, {'connected_gene': 'SRCIN1', 'score': 4.62}, {'connected_gene': 'PIP4K2B', 'score': 2.54}, {'connected_gene': 'SOCS7', 'score': 2.37}, {'connected_gene': 'GPR179', 'score': 1.49}, {'connected_gene': 'ARHGAP23', 'score': 1.27}]
chr17	GH17I038414	38414318	38416667	1.78	[{'connected_gene': 'GC17M038418', 'score': 550.77}, {'connected_gene': 'GC17M038417', 'score': 550.77}, {'connected_gene': 'PIR32801', 'score': 550.77}, {'connected_gene': 'LOC105371762', 'score': 27.5}, {'connected_gene': 'GPR179', 'score': 11.96}, {'connected_gene': 'RPL19', 'score': 10.22}, {'connected_gene': 'FBXL20', 'score': 9.71}, {'connected_gene': 'EPOP', 'score': 1.72}, {'connected_gene': 'GC17M038410', 'score': 0.77}, {'connected_gene': 'GC17P038493', 'score': 0.44}]