PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000404209	[[43256837, 43257528], [43258484, 43258739], [43259139, 43259418], [43262153, 43262432], [43268067, 43268433], [43269669, 43269830]]	[[43257511, 43257528], [43258484, 43258739], [43259139, 43259418], [43262153, 43262432], [43268067, 43268433], [43269669, 43269733]]
ENST00000466163	[[43256842, 43257528], [43258484, 43260276]]	None
ENST00000600709	[[43256843, 43257528], [43258484, 43258739], [43262153, 43262432], [43262753, 43263047]]	None
ENST00000406636	[[43256876, 43257528], [43258484, 43258739], [43259139, 43259418], [43262153, 43262432], [43269669, 43269814]]	[[43257511, 43257528], [43258484, 43258739], [43259139, 43259418], [43262153, 43262432], [43269669, 43269733]]
ENST00000401467	[[43256878, 43257528], [43258484, 43258739], [43259139, 43259418], [43268067, 43268433], [43359707, 43359843]]	[[43257511, 43257528], [43258484, 43258739], [43259139, 43259418], [43268067, 43268433], [43359707, 43359771]]
ENST00000306511	[[43258384, 43258739], [43259139, 43259418], [43262153, 43262432], [43268067, 43268433], [43269669, 43269831]]	[[43258446, 43258739], [43259139, 43259418], [43262153, 43262432], [43268067, 43268433], [43269669, 43269733]]
ENST00000469260	[[43259139, 43259418], [43262153, 43262432], [43262753, 43263063], [43269669, 43269819]]	None
ENST00000478387	[[43259143, 43259418], [43262153, 43262432], [43262753, 43263093], [43269669, 43269821]]	[[43263034, 43263093], [43269669, 43269733]]
ENST00000593692	[[43267843, 43268433], [43269669, 43269815]]	None
NM_001130167	[[43256838, 43257528], [43258484, 43258739], [43259139, 43259418], [43262153, 43262432], [43268067, 43268433], [43269669, 43269831]]	[[43257511, 43257528], [43258484, 43258739], [43259139, 43259418], [43262153, 43262432], [43268067, 43268433], [43269669, 43269733]]
NM_001130168	[[43256838, 43257528], [43258484, 43258739], [43259139, 43259418], [43262153, 43262432], [43269669, 43269831]]	[[43257511, 43257528], [43258484, 43258739], [43259139, 43259418], [43262153, 43262432], [43269669, 43269733]]
NM_182707	[[43258384, 43258739], [43259139, 43259418], [43262153, 43262432], [43268067, 43268433], [43269669, 43269831]]	[[43258446, 43258739], [43259139, 43259418], [43262153, 43262432], [43268067, 43268433], [43269669, 43269733]]

Promoter

Chrom	Start	End	Description
chr19	43269809	43269838	CAGE_peak_1_at_PSG8_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I042917	42917884	42917943	0.5	[{'connected_gene': 'PSG6', 'score': 550.77}, {'connected_gene': 'PSG1', 'score': 0.28}]
chr19	GH19I042900	42900489	42901097	0.38	[{'connected_gene': 'PSG6', 'score': 0.37}, {'connected_gene': 'PSG1', 'score': 0.34}]
chr19	GH19I042896	42896913	42899461	0.49	[{'connected_gene': 'PSG4', 'score': 4.78}, {'connected_gene': 'PSG1', 'score': 0.37}, {'connected_gene': 'PSG6', 'score': 0.34}]
chr19	GH19I042830	42830909	42834093	0.74	[{'connected_gene': 'PSG4', 'score': 5.36}, {'connected_gene': 'ENSG00000231412', 'score': 4.28}, {'connected_gene': 'GC19P042828', 'score': 0.77}, {'connected_gene': 'PSG8', 'score': 0.34}]
chr19	GH19I042874	42874129	42877976	1.03	[{'connected_gene': 'PSG4', 'score': 5.17}, {'connected_gene': 'ENSG00000231412', 'score': 5.17}, {'connected_gene': 'MEGF8', 'score': 4.31}, {'connected_gene': 'PSG5', 'score': 2.02}, {'connected_gene': 'GC19P042872', 'score': 0.77}, {'connected_gene': 'PSG1', 'score': 0.77}]
chr19	GH19I042888	42888129	42888278	0.2	[{'connected_gene': 'PSG1', 'score': 0.44}, {'connected_gene': 'GC19P042872', 'score': 0.37}, {'connected_gene': 'PSG6', 'score': 0.29}]
chr19	GH19I042884	42884851	42885638	0.6	[{'connected_gene': 'PSG1', 'score': 0.44}, {'connected_gene': 'GC19P042872', 'score': 0.39}, {'connected_gene': 'PSG6', 'score': 0.29}]
chr19	GH19I042760	42760143	42763591	1.17	[{'connected_gene': 'PSG8', 'score': 15.87}, {'connected_gene': 'PSG5', 'score': 2.26}, {'connected_gene': 'CEACAM1', 'score': 1.43}, {'connected_gene': 'GC19M042749', 'score': 0.44}, {'connected_gene': 'PSG3', 'score': 0.34}]
chr19	GH19I042765	42765668	42765727	0.5	[{'connected_gene': 'PSG8', 'score': 550.17}, {'connected_gene': 'GC19M042749', 'score': 0.77}, {'connected_gene': 'PSG3', 'score': 0.31}]
chr19	GH19I042735	42735600	42738140	0.77	[{'connected_gene': 'PSG8', 'score': 10.41}, {'connected_gene': 'PSG3', 'score': 0.77}, {'connected_gene': 'PIR38528', 'score': 0.26}]
chr19	GH19I042879	42879670	42879729	0.5	[{'connected_gene': 'PSG1', 'score': 550.77}, {'connected_gene': 'GC19P042872', 'score': 0.44}]
chr19	GH19I042449	42449480	42451178	1.7	[{'connected_gene': 'LIPE', 'score': 22.07}, {'connected_gene': 'RNU4-60P', 'score': 11.94}, {'connected_gene': 'PSG8', 'score': 5.06}, {'connected_gene': 'CD177', 'score': 4.34}, {'connected_gene': 'CEACAM1', 'score': 1.26}, {'connected_gene': 'CXCL17', 'score': 0.44}, {'connected_gene': 'PIR51613', 'score': 0.39}, {'connected_gene': 'LIPE-AS1', 'score': 0.23}]
chr19	GH19I042440	42440289	42445617	2.03	[{'connected_gene': 'CXCL17', 'score': 559.05}, {'connected_gene': 'ZNF574', 'score': 14.47}, {'connected_gene': 'LIPE-AS1', 'score': 11.7}, {'connected_gene': 'CNFN', 'score': 9.76}, {'connected_gene': 'PSG8', 'score': 5.07}, {'connected_gene': 'ENSG00000268355', 'score': 4.95}, {'connected_gene': 'CD177', 'score': 4.82}, {'connected_gene': 'GC19P042435', 'score': 0.44}]
chr19	GH19I042849	42849760	42854049	1.16	[{'connected_gene': 'ZNF526', 'score': 12.78}, {'connected_gene': 'PSG4', 'score': 5.55}, {'connected_gene': 'ENSG00000231412', 'score': 4.65}, {'connected_gene': 'MEGF8', 'score': 4.05}, {'connected_gene': 'PSG10P', 'score': 0.77}, {'connected_gene': 'PSG8', 'score': 0.77}, {'connected_gene': 'GC19P042828', 'score': 0.34}]
chr19	GH19I042819	42819124	42821304	0.6	[{'connected_gene': 'PSG8-AS1', 'score': 550.77}, {'connected_gene': 'ZNF526', 'score': 17.32}, {'connected_gene': 'XRCC1', 'score': 10.61}, {'connected_gene': 'ZNF574', 'score': 9.85}, {'connected_gene': 'PSG4', 'score': 5.39}, {'connected_gene': 'CEACAMP6', 'score': 0.29}, {'connected_gene': 'PSG8', 'score': 0.28}]
chr19	GH19I042793	42793574	42794402	0.65	[{'connected_gene': 'ZNF576', 'score': 13.71}, {'connected_gene': 'PINLYP', 'score': 10.71}, {'connected_gene': 'IRGQ', 'score': 9.94}, {'connected_gene': 'CEACAMP6', 'score': 0.44}, {'connected_gene': 'PSG8-AS1', 'score': 0.31}, {'connected_gene': 'PSG8', 'score': 0.21}]
chr19	GH19I042889	42888573	42890984	0.82	[{'connected_gene': 'ENSG00000231412', 'score': 4.28}, {'connected_gene': 'PSG1', 'score': 0.44}, {'connected_gene': 'GC19P042872', 'score': 0.37}, {'connected_gene': 'PSG6', 'score': 0.31}]
chr19	GH19I042480	42480450	42481874	1.32	[{'connected_gene': 'GC19M042479', 'score': 550.77}, {'connected_gene': 'CXCL17', 'score': 7.71}, {'connected_gene': 'PSG8', 'score': 4.79}, {'connected_gene': 'ENSG00000268355', 'score': 4.35}, {'connected_gene': 'RNU4-60P', 'score': 0.44}, {'connected_gene': 'LIPE-AS1', 'score': 0.18}]