PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000486890	[[19923476, 19923603], [19927280, 19927465], [19948593, 19948641], [19949967, 19950284]]	None
ENST00000322753	[[19923483, 19923603], [19948593, 19948641], [19949967, 19950077], [19952880, 19956314]]	[[19923539, 19923603], [19948593, 19948641], [19949967, 19950077], [19952880, 19952895]]
ENST00000498067	[[19923484, 19923603], [19924327, 19924689]]	None
ENST00000462646	[[19923488, 19923603], [19940994, 19941088], [19948593, 19948641], [19949967, 19950045]]	None
ENST00000467029	[[19923494, 19923603], [19943751, 19943830], [19948593, 19948641], [19949967, 19950077], [19952880, 19953117]]	None
ENST00000481464	[[19923532, 19923603], [19927280, 19927465], [19948593, 19948641], [19949967, 19950077], [19952880, 19953123]]	None
ENST00000498642	[[19923534, 19923603], [19948593, 19948641], [19949967, 19950077], [19951885, 19952126], [19952880, 19953081]]	None
ENST00000479642	[[19923545, 19923603], [19927280, 19927798]]	None
ENST00000485362	[[19923563, 19923603], [19924327, 19924347], [19948593, 19948641], [19949967, 19950077], [19952880, 19953100]]	None
NM_001204082	[[19923470, 19923603], [19949967, 19950077], [19952880, 19956315]]	[[19923539, 19923603], [19949967, 19950077], [19952880, 19952895]]
NM_001032363	[[19923470, 19923603], [19948593, 19948641], [19949967, 19950077], [19952880, 19956315]]	[[19923539, 19923603], [19948593, 19948641], [19949967, 19950077], [19952880, 19952895]]
NM_001204083	[[19923470, 19923603], [19948593, 19948641], [19949967, 19950077], [19951885, 19952126], [19952880, 19956315]]	[[19923539, 19923603], [19948593, 19948641], [19949967, 19950077], [19951885, 19952086]]
NR_033758	[[19923470, 19923603], [19943751, 19943830], [19948593, 19948641], [19949967, 19950077], [19952880, 19956315]]	None
NR_033757	[[19923470, 19923603], [19927280, 19927465], [19948593, 19948641], [19949967, 19950077], [19952880, 19956315]]	None

Promoter

Chrom	Start	End	Description
chr1	19923454	19923553	CAGE_peak_1_at_MINOS1_5end,CAGE_peak_2_at_NBL1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I019383	19383527	19388146	1.3	[{'connected_gene': 'CAPZB', 'score': 22.87}, {'connected_gene': 'AKR7A2', 'score': 12.61}, {'connected_gene': 'MINOS1', 'score': 11.87}, {'connected_gene': 'LOC105378614', 'score': 11.87}, {'connected_gene': 'RNU4-28P', 'score': 11.13}, {'connected_gene': 'NBL1', 'score': 10.57}, {'connected_gene': 'HTR6', 'score': 10.46}, {'connected_gene': 'PQLC2', 'score': 6.94}, {'connected_gene': 'GC01P019361', 'score': 0.34}, {'connected_gene': 'RN7SL277P', 'score': 0.28}]
chr1	GH01I019609	19608092	19608654	0.2	[{'connected_gene': 'RPS14P3', 'score': 550.77}, {'connected_gene': 'NBL1', 'score': 6.26}, {'connected_gene': 'MINOS1', 'score': 0.39}, {'connected_gene': 'MINOS1-NBL1', 'score': 0.39}]
chr1	GH01I019605	19605940	19606709	0.31	[{'connected_gene': 'RPS14P3', 'score': 550.77}, {'connected_gene': 'NBL1', 'score': 6.23}, {'connected_gene': 'MINOS1', 'score': 0.44}, {'connected_gene': 'MINOS1-NBL1', 'score': 0.44}]
chr1	GH01I019606	19606927	19607076	0.51	[{'connected_gene': 'RPS14P3', 'score': 550.77}, {'connected_gene': 'MINOS1', 'score': 0.39}, {'connected_gene': 'MINOS1-NBL1', 'score': 0.39}]
chr1	GH01I019608	19608030	19608089	0.5	[{'connected_gene': 'RPS14P3', 'score': 550.77}, {'connected_gene': 'MINOS1-NBL1', 'score': 550.39}, {'connected_gene': 'MINOS1', 'score': 0.39}, {'connected_gene': 'NBL1', 'score': 0.29}]
chr1	GH01I019612	19612351	19614396	0.83	[{'connected_gene': 'NBL1', 'score': 6.23}, {'connected_gene': 'AKR7A3', 'score': 5.4}, {'connected_gene': 'AKR7A2', 'score': 4.92}, {'connected_gene': 'RPS14P3', 'score': 0.44}, {'connected_gene': 'MINOS1', 'score': 0.37}, {'connected_gene': 'MINOS1-NBL1', 'score': 0.37}]
chr1	GH01I019622	19622475	19624369	0.83	[{'connected_gene': 'MINOS1', 'score': 13.14}, {'connected_gene': 'LOC105378614', 'score': 13.14}, {'connected_gene': 'RNU4-28P', 'score': 10.27}, {'connected_gene': 'CDA', 'score': 5.29}, {'connected_gene': 'AKR7A2', 'score': 4.92}, {'connected_gene': 'NBL1', 'score': 0.37}, {'connected_gene': 'RPS14P3', 'score': 0.37}, {'connected_gene': 'MINOS1-NBL1', 'score': 0.31}]
chr1	GH01I019388	19388244	19389549	0.31	[{'connected_gene': 'MINOS1', 'score': 11.87}, {'connected_gene': 'LOC105378614', 'score': 11.87}, {'connected_gene': 'RNU4-28P', 'score': 11.13}, {'connected_gene': 'CAPZB', 'score': 8.98}, {'connected_gene': 'PQLC2', 'score': 6.98}, {'connected_gene': 'GC01P019361', 'score': 0.31}, {'connected_gene': 'RN7SL277P', 'score': 0.28}]
chr1	GH01I019621	19621025	19621056	0.2	[{'connected_gene': 'MINOS1', 'score': 13.17}, {'connected_gene': 'LOC105378614', 'score': 13.17}, {'connected_gene': 'RNU4-28P', 'score': 10.27}, {'connected_gene': 'RPS14P3', 'score': 0.39}, {'connected_gene': 'NBL1', 'score': 0.37}, {'connected_gene': 'MINOS1-NBL1', 'score': 0.34}]
chr1	GH01I019619	19619716	19620612	1.26	[{'connected_gene': 'MINOS1', 'score': 13.17}, {'connected_gene': 'LOC105378614', 'score': 13.17}, {'connected_gene': 'RNU4-28P', 'score': 10.28}, {'connected_gene': 'RPS14P3', 'score': 0.39}, {'connected_gene': 'NBL1', 'score': 0.34}, {'connected_gene': 'MINOS1-NBL1', 'score': 0.34}]
chr1	GH01I019623	19621069	19622456	0.2	[{'connected_gene': 'MINOS1', 'score': 13.17}, {'connected_gene': 'LOC105378614', 'score': 13.17}, {'connected_gene': 'RNU4-28P', 'score': 10.27}, {'connected_gene': 'NBL1', 'score': 6.22}, {'connected_gene': 'CDA', 'score': 5.3}, {'connected_gene': 'RPS14P3', 'score': 0.39}, {'connected_gene': 'MINOS1-NBL1', 'score': 0.34}]
chr1	GH01I019595	19595414	19598764	2.29	[{'connected_gene': 'MINOS1', 'score': 550.77}, {'connected_gene': 'GC01P019599', 'score': 550.77}, {'connected_gene': 'LOC105378614', 'score': 550.77}, {'connected_gene': 'MINOS1-NBL1', 'score': 550.77}, {'connected_gene': 'NBL1', 'score': 6.97}, {'connected_gene': 'AKR7A2', 'score': 4.93}, {'connected_gene': 'RPS14P3', 'score': 0.39}]
chr1	GH01I019600	19600317	19600478	0.7	[{'connected_gene': 'TMCO4', 'score': 1.43}, {'connected_gene': 'MINOS1', 'score': 0.77}, {'connected_gene': 'MINOS1-NBL1', 'score': 0.77}, {'connected_gene': 'RPS14P3', 'score': 0.44}]
chr1	GH01I019389	19389839	19394075	1.25	[{'connected_gene': 'LOC105378614', 'score': 11.87}, {'connected_gene': 'MINOS1', 'score': 11.87}, {'connected_gene': 'CAPZB', 'score': 11.85}, {'connected_gene': 'RNU4-28P', 'score': 11.13}, {'connected_gene': 'PQLC2', 'score': 9.6}, {'connected_gene': 'AKR7A2', 'score': 9.55}, {'connected_gene': 'AKR7A3', 'score': 9.0}, {'connected_gene': 'RN7SL277P', 'score': 0.29}, {'connected_gene': 'GC01P019361', 'score': 0.29}]