PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000263187	[[76262566, 76262914], [76269415, 76269598], [76272665, 76272826], [76276381, 76276492], [76280705, 76280821], [76282057, 76282231], [76288093, 76288266], [76313893, 76313961], [76333198, 76333273], [76342620, 76342685], [76343833, 76344003], [76344676, 76344813], [76345734, 76345838], [76346930, 76347055], [76349305, 76349506], [76354935, 76355054], [76356380, 76356509], [76363591, 76363766], [76365302, 76365391], [76378380, 76378923]]	[[76262670, 76262914], [76269415, 76269598], [76272665, 76272826], [76276381, 76276492], [76280705, 76280821], [76282057, 76282231], [76288093, 76288266], [76313893, 76313961], [76333198, 76333273], [76342620, 76342685], [76343833, 76344003], [76344676, 76344813], [76345734, 76345838], [76346930, 76347055], [76349305, 76349506], [76354935, 76355054], [76356380, 76356509], [76363591, 76363766], [76365302, 76365391], [76378380, 76378572]]
NM_002440	[[76262555, 76262914], [76269415, 76269598], [76272665, 76272826], [76276381, 76276492], [76280705, 76280821], [76282057, 76282231], [76288093, 76288266], [76313893, 76313961], [76333198, 76333273], [76342620, 76342685], [76343833, 76344003], [76344676, 76344813], [76345734, 76345838], [76346930, 76347055], [76349305, 76349506], [76354935, 76355054], [76356380, 76356509], [76363591, 76363766], [76365302, 76365391], [76378380, 76378923]]	[[76262670, 76262914], [76269415, 76269598], [76272665, 76272826], [76276381, 76276492], [76280705, 76280821], [76282057, 76282231], [76288093, 76288266], [76313893, 76313961], [76333198, 76333273], [76342620, 76342685], [76343833, 76344003], [76344676, 76344813], [76345734, 76345838], [76346930, 76347055], [76349305, 76349506], [76354935, 76355054], [76356380, 76356509], [76363591, 76363766], [76365302, 76365391], [76378380, 76378572]]

Promoter

Chrom	Start	End	Description
chr1	76262552	76262588	CAGE_peak_1_at_MSH4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I075784	75784084	75791804	2.35	[{'connected_gene': 'RABGGTB', 'score': 559.18}, {'connected_gene': 'SNORD45B', 'score': 550.77}, {'connected_gene': 'GC01P075797', 'score': 550.77}, {'connected_gene': 'GC01P075800', 'score': 550.77}, {'connected_gene': 'GC01P075799', 'score': 550.77}, {'connected_gene': 'SNORD45C', 'score': 550.77}, {'connected_gene': 'SNORD45A', 'score': 550.77}, {'connected_gene': 'MSH4', 'score': 22.49}, {'connected_gene': 'DLSTP1', 'score': 10.1}, {'connected_gene': 'ACADM', 'score': 7.46}]
chr1	GH01I075765	75765070	75766712	0.66	[{'connected_gene': 'MSH4', 'score': 11.63}, {'connected_gene': 'ACADM', 'score': 9.78}, {'connected_gene': 'RABGGTB', 'score': 7.22}, {'connected_gene': 'DLSTP1', 'score': 0.34}]
chr1	GH01I075797	75796769	75796905	1.3	[{'connected_gene': 'MSH4', 'score': 550.77}, {'connected_gene': 'SNORD45B', 'score': 0.44}]
chr1	GH01I075614	75614469	75617019	1.36	[{'connected_gene': 'MSH4', 'score': 8.94}, {'connected_gene': 'GC01M075617', 'score': 0.44}, {'connected_gene': 'GC01M075599', 'score': 0.37}, {'connected_gene': 'SLC44A5', 'score': 0.14}]
chr1	GH01I075796	75796916	75797205	0.78	[{'connected_gene': 'MSH4', 'score': 550.77}, {'connected_gene': 'DLSTP1', 'score': 10.07}, {'connected_gene': 'GC01M075828', 'score': 0.26}]
chr1	GH01I075969	75969696	75969845	0.38	[{'connected_gene': 'MSH4', 'score': 6.6}, {'connected_gene': 'LOC105378806', 'score': 0.29}, {'connected_gene': 'LOC101927342', 'score': 0.28}]
chr1	GH01I075964	75964496	75964645	0.59	[{'connected_gene': 'MSH4', 'score': 9.77}, {'connected_gene': 'LOC101927342', 'score': 0.29}, {'connected_gene': 'LOC105378806', 'score': 0.28}]
chr1	GH01I076267	76267555	76270054	0.72	[{'connected_gene': 'MSH4', 'score': 3.99}, {'connected_gene': 'GC01M076190', 'score': 0.18}, {'connected_gene': 'LOC100418965', 'score': 0.17}, {'connected_gene': 'ST6GALNAC3', 'score': 0.08}]
chr1	GH01I075722	75722101	75728122	2.29	[{'connected_gene': 'ACADM', 'score': 568.97}, {'connected_gene': 'SLC44A5', 'score': 550.77}, {'connected_gene': 'ENSG00000178193', 'score': 550.77}, {'connected_gene': 'RABGGTB', 'score': 18.63}, {'connected_gene': 'SNORD45C', 'score': 12.18}, {'connected_gene': 'SNORD45A', 'score': 12.18}, {'connected_gene': 'MSH4', 'score': 11.61}, {'connected_gene': 'PIR54256', 'score': 0.37}]
chr1	GH01I076002	76002865	76003019	0.22	[{'connected_gene': 'LOC105378806', 'score': 550.77}, {'connected_gene': 'ST6GALNAC3', 'score': 10.51}, {'connected_gene': 'SLC44A5', 'score': 8.75}, {'connected_gene': 'ASB17', 'score': 8.09}, {'connected_gene': 'MSH4', 'score': 7.37}, {'connected_gene': 'ENSG00000230027', 'score': 0.28}, {'connected_gene': 'LOC101927342', 'score': 0.19}]
chr1	GH01I075671	75671945	75673743	0.9	[{'connected_gene': 'PIR63059', 'score': 550.77}, {'connected_gene': 'GC01P075675', 'score': 550.77}, {'connected_gene': 'ACADM', 'score': 17.7}, {'connected_gene': 'DLSTP1', 'score': 10.16}, {'connected_gene': 'MSH4', 'score': 8.4}, {'connected_gene': 'LOC100421536', 'score': 7.99}, {'connected_gene': 'SLC44A5', 'score': 0.23}]
chr1	GH01I076040	76040066	76041629	0.62	[{'connected_gene': 'ENSG00000230027', 'score': 550.77}, {'connected_gene': 'ST6GALNAC3', 'score': 24.87}, {'connected_gene': 'LOC101927342', 'score': 6.4}, {'connected_gene': 'ACADM', 'score': 5.25}, {'connected_gene': 'MSH4', 'score': 5.16}, {'connected_gene': 'LOC105378806', 'score': 0.28}]
chr1	GH01I075909	75908756	75908945	0.56	[{'connected_gene': 'GC01P075906', 'score': 0.77}, {'connected_gene': 'ASB17', 'score': 0.34}, {'connected_gene': 'MSH4', 'score': 0.14}]
chr1	GH01I075908	75908956	75909105	0.49	[{'connected_gene': 'GC01P075906', 'score': 0.77}, {'connected_gene': 'ASB17', 'score': 0.34}, {'connected_gene': 'MSH4', 'score': 0.14}]