PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr8	16035454	16035468	CAGE_peak_10_at_MSR1_5end
chr8	16043780	16043783	CAGE_peak_6_at_MSR1_5end
chr8	16050142	16050168	CAGE_peak_1_at_MSR1_5end
chr8	16050214	16050227	CAGE_peak_2_at_MSR1_5end
chr8	16050288	16050299	CAGE_peak_4_at_MSR1_5end
chr8	16424975	16425011	CAGE_peak_3_at_MSR1_5end
chr8	16425014	16425019	CAGE_peak_13_at_MSR1_5end
chr8	16425043	16425061	CAGE_peak_5_at_MSR1_5end
chr8	16425067	16425095	CAGE_peak_7_at_MSR1_5end
chr8	16425118	16425128	CAGE_peak_12_at_MSR1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I016283	16283402	16285495	0.43	[{'connected_gene': 'CCT3P1', 'score': 0.44}, {'connected_gene': 'GC08P016314', 'score': 0.29}, {'connected_gene': 'MSR1', 'score': 0.06}]
chr8	GH08I016264	16264108	16265693	0.2	[{'connected_gene': 'CCT3P1', 'score': 0.39}, {'connected_gene': 'GC08M016126', 'score': 0.26}, {'connected_gene': 'MSR1', 'score': 0.06}]
chr8	GH08I016423	16423272	16423858	0.43	[{'connected_gene': 'MSR1', 'score': 12.64}, {'connected_gene': 'GC08M016443', 'score': 0.34}, {'connected_gene': 'MRPL49P2', 'score': 0.25}, {'connected_gene': 'LOC101929028', 'score': 0.07}]
chr8	GH08I016364	16364737	16364915	0.47	[{'connected_gene': 'MSR1', 'score': 7.65}, {'connected_gene': 'MRPL49P2', 'score': 0.44}, {'connected_gene': 'GC08M016350', 'score': 0.39}]
chr8	GH08I016361	16361522	16363400	0.67	[{'connected_gene': 'MSR1', 'score': 11.14}, {'connected_gene': 'MRPL49P2', 'score': 0.39}, {'connected_gene': 'GC08M016350', 'score': 0.39}]
chr8	GH08I016631	16631801	16632774	0.42	[{'connected_gene': 'MSR1', 'score': 13.07}, {'connected_gene': 'GC08M016637', 'score': 0.39}, {'connected_gene': 'GC08P016619', 'score': 0.39}, {'connected_gene': 'ENSG00000253184', 'score': 0.31}, {'connected_gene': 'LOC101929028', 'score': 0.23}]
chr8	GH08I016546	16546869	16548877	0.6	[{'connected_gene': 'MSR1', 'score': 18.95}, {'connected_gene': 'GC08M016443', 'score': 0.15}, {'connected_gene': 'LOC101929028', 'score': 0.12}]
chr8	GH08I016578	16578600	16579001	0.56	[{'connected_gene': 'MSR1', 'score': 0.39}, {'connected_gene': 'PIR53677', 'score': 0.37}, {'connected_gene': 'LOC101929028', 'score': 0.14}]
chr8	GH08I016518	16518132	16518301	0.2	[{'connected_gene': 'MSR1', 'score': 6.02}, {'connected_gene': 'GC08M016443', 'score': 0.19}, {'connected_gene': 'LOC101929028', 'score': 0.1}]
chr8	GH08I016197	16196962	16197293	0.29	[{'connected_gene': 'MSR1', 'score': 16.4}, {'connected_gene': 'GC08M016126', 'score': 0.34}, {'connected_gene': 'GC08P016135', 'score': 0.21}]
chr8	GH08I016328	16328159	16328353	0.23	[{'connected_gene': 'MSR1', 'score': 11.43}, {'connected_gene': 'GC08M016329', 'score': 0.44}, {'connected_gene': 'GC08P016314', 'score': 0.39}]
chr8	GH08I016163	16163801	16164800	0.31	[{'connected_gene': 'MSR1', 'score': 4.38}, {'connected_gene': 'GC08P016135', 'score': 0.31}, {'connected_gene': 'GC08M016126', 'score': 0.22}]
chr8	GH08I016185	16185801	16186800	0.7	[{'connected_gene': 'MSR1', 'score': 550.05}, {'connected_gene': 'GC08M016126', 'score': 0.29}, {'connected_gene': 'GC08P016135', 'score': 0.23}]
chr8	GH08I016192	16192641	16192700	0.5	[{'connected_gene': 'MSR1', 'score': 550.05}, {'connected_gene': 'GC08M016126', 'score': 0.31}, {'connected_gene': 'GC08P016135', 'score': 0.22}]
chr8	GH08I016193	16192775	16192834	0.5	[{'connected_gene': 'MSR1', 'score': 550.05}, {'connected_gene': 'GC08M016126', 'score': 0.31}, {'connected_gene': 'GC08P016135', 'score': 0.22}]
chr8	GH08I016371	16371457	16371788	0.2	[{'connected_gene': 'MRPL49P2', 'score': 0.77}, {'connected_gene': 'GC08M016350', 'score': 0.34}, {'connected_gene': 'MSR1', 'score': 0.08}, {'connected_gene': 'LOC101929028', 'score': 0.06}]
chr8	GH08I016407	16407008	16410830	0.8	[{'connected_gene': 'MRPL49P2', 'score': 0.29}, {'connected_gene': 'GC08M016443', 'score': 0.28}, {'connected_gene': 'MSR1', 'score': 0.1}, {'connected_gene': 'LOC101929028', 'score': 0.06}]
chr8	GH08I016603	16603427	16604838	1.18	[{'connected_gene': 'ENSG00000253184', 'score': 550.77}, {'connected_gene': 'MSR1', 'score': 21.22}, {'connected_gene': 'PIR53677', 'score': 0.44}, {'connected_gene': 'LOC101929028', 'score': 0.18}]
chr8	GH08I016477	16477411	16478168	0.43	[{'connected_gene': 'GC08M016443', 'score': 0.29}, {'connected_gene': 'MSR1', 'score': 0.17}, {'connected_gene': 'LOC101929028', 'score': 0.08}]
chr8	GH08I016198	16196601	16196800	0.2	[{'connected_gene': 'GC08M016126', 'score': 0.34}, {'connected_gene': 'GC08P016135', 'score': 0.21}, {'connected_gene': 'MSR1', 'score': 0.05}]
chr8	GH08I016196	16196201	16196400	0.2	[{'connected_gene': 'GC08M016126', 'score': 0.34}, {'connected_gene': 'GC08P016135', 'score': 0.21}, {'connected_gene': 'MSR1', 'score': 0.05}]
chr8	GH08I016322	16322589	16322793	0.22	[{'connected_gene': 'GC08P016314', 'score': 0.44}, {'connected_gene': 'GC08M016329', 'score': 0.37}, {'connected_gene': 'MSR1', 'score': 0.07}]
chr8	GH08I016214	16214326	16215621	0.31	[{'connected_gene': 'GC08M016126', 'score': 0.44}, {'connected_gene': 'GC08P016135', 'score': 0.18}, {'connected_gene': 'MSR1', 'score': 0.05}]
chr8	GH08I016415	16415840	16416846	0.4	[{'connected_gene': 'GC08M016443', 'score': 0.31}, {'connected_gene': 'MRPL49P2', 'score': 0.26}, {'connected_gene': 'MSR1', 'score': 0.1}, {'connected_gene': 'LOC101929028', 'score': 0.06}]
chr8	GH08I016413	16413068	16415230	0.31	[{'connected_gene': 'GC08M016443', 'score': 0.29}, {'connected_gene': 'MRPL49P2', 'score': 0.28}, {'connected_gene': 'MSR1', 'score': 0.1}, {'connected_gene': 'LOC101929028', 'score': 0.06}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000350896	[[15965386, 15967727], [16001066, 16001120], [16007739, 16007820], [16012572, 16012653], [16021573, 16021760], [16025966, 16026379], [16032695, 16032809], [16035394, 16035501], [16050106, 16050300]]	[[15967593, 15967727], [16001066, 16001120], [16007739, 16007820], [16012572, 16012653], [16021573, 16021760], [16025966, 16026379], [16032695, 16032809], [16035394, 16035497]]
ENST00000262101	[[15966939, 15967727], [15977926, 15978115], [16001066, 16001120], [16007739, 16007820], [16012572, 16012653], [16021573, 16021760], [16025966, 16026379], [16032695, 16032809], [16035394, 16035501], [16050106, 16050224]]	[[15967593, 15967727], [15977926, 15978115], [16001066, 16001120], [16007739, 16007820], [16012572, 16012653], [16021573, 16021760], [16025966, 16026379], [16032695, 16032809], [16035394, 16035497]]
ENST00000445506	[[15967554, 15967727], [15977926, 15978115], [16001066, 16001120], [16007739, 16007820], [16012572, 16012653], [16021573, 16021760], [16025966, 16026379], [16032695, 16032809], [16035394, 16035501], [16043667, 16043781]]	[[15967593, 15967727], [15977926, 15978115], [16001066, 16001120], [16007739, 16007820], [16012572, 16012653], [16021573, 16021760], [16025966, 16026379], [16032695, 16032809], [16035394, 16035501], [16043667, 16043717]]
ENST00000355282	[[15967593, 15967727], [16001066, 16001120], [16007739, 16007820], [16012572, 16012653], [16021573, 16021760], [16025966, 16026379], [16032695, 16032809], [16035394, 16035497]]	[[15967593, 15967727], [16001066, 16001120], [16007739, 16007820], [16012572, 16012653], [16021573, 16021760], [16025966, 16026379], [16032695, 16032809], [16035394, 16035497]]
ENST00000522672	[[15978397, 15978689], [16001066, 16001120], [16007739, 16007820], [16012572, 16012653], [16021573, 16021760]]	[[15978642, 15978689], [16001066, 16001120], [16007739, 16007820], [16012572, 16012653], [16021573, 16021760]]
ENST00000518026	[[16032771, 16032809], [16035394, 16035501], [16122681, 16122840], [16240787, 16240836], [16369355, 16369419], [16424758, 16424871]]	[[16032771, 16032809], [16035394, 16035501], [16122681, 16122710]]
ENST00000521876	[[16107906, 16108001], [16113752, 16113919], [16122681, 16122840], [16240787, 16240836], [16369355, 16369425]]	None
ENST00000518343	[[16113839, 16113919], [16122681, 16122840], [16353301, 16353455], [16355382, 16355493], [16369355, 16369419], [16424900, 16424929]]	None
ENST00000522130	[[16325272, 16325545], [16369355, 16369419], [16423043, 16423096], [16424900, 16424999]]	None
ENST00000381998	[[15996827, 15998554], [16001066, 16001120], [16007739, 16007820], [16012572, 16012653], [16021573, 16021760], [16025966, 16026379], [16032695, 16032809], [16035394, 16035501], [16050106, 16050168]]	[[15998510, 15998554], [16001066, 16001120], [16007739, 16007820], [16012572, 16012653], [16021573, 16021760], [16025966, 16026379], [16032695, 16032809], [16035394, 16035497]]
ENST00000519060	[[15998163, 15998608], [16001066, 16001120], [16007739, 16007820], [16012572, 16012653], [16021573, 16021760], [16035394, 16035501], [16050106, 16050160]]	[[16021749, 16021760], [16035394, 16035497]]
ENST00000536385	[[15998163, 15998554], [16001066, 16001120], [16007739, 16007820], [16012572, 16012653], [16021573, 16021760], [16035394, 16035501], [16050106, 16050160]]	[[15998510, 15998554], [16001066, 16001120], [16007739, 16007820], [16012572, 16012653], [16021573, 16021712]]
ENST00000518960	[[16032718, 16032809], [16035394, 16035501], [16072321, 16072403], [16072510, 16072583]]	[[16032718, 16032809], [16035394, 16035497]]
ENST00000517522	[[16225594, 16225947], [16240787, 16240837]]	None
ENST00000520846	[[16325260, 16325545], [16353301, 16353389]]	None
NM_138715	[[15965386, 15967727], [15977926, 15978115], [16001066, 16001120], [16007739, 16007820], [16012572, 16012653], [16021573, 16021760], [16025966, 16026379], [16032695, 16032809], [16035394, 16035501], [16050106, 16050300]]	[[15967593, 15967727], [15977926, 15978115], [16001066, 16001120], [16007739, 16007820], [16012572, 16012653], [16021573, 16021760], [16025966, 16026379], [16032695, 16032809], [16035394, 16035497]]
NM_138716	[[15965386, 15967727], [16001066, 16001120], [16007739, 16007820], [16012572, 16012653], [16021573, 16021760], [16025966, 16026379], [16032695, 16032809], [16035394, 16035501], [16050106, 16050300]]	[[15967593, 15967727], [16001066, 16001120], [16007739, 16007820], [16012572, 16012653], [16021573, 16021760], [16025966, 16026379], [16032695, 16032809], [16035394, 16035497]]
NM_002445	[[15996825, 15998554], [16001066, 16001120], [16007739, 16007820], [16012572, 16012653], [16021573, 16021760], [16025966, 16026379], [16032695, 16032809], [16035394, 16035501], [16050106, 16050300]]	[[15998510, 15998554], [16001066, 16001120], [16007739, 16007820], [16012572, 16012653], [16021573, 16021760], [16025966, 16026379], [16032695, 16032809], [16035394, 16035497]]