PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000268668	[[2009508, 2009755], [2011153, 2011292], [2011497, 2011637], [2011797, 2011976]]	[[2009625, 2009755], [2011153, 2011292], [2011497, 2011637], [2011797, 2011907]]
ENST00000543683	[[2009543, 2009755], [2011153, 2011292], [2011497, 2011976]]	[[2009625, 2009755], [2011153, 2011292], [2011497, 2011735]]
ENST00000565031	[[2009544, 2009755], [2011153, 2011900]]	None
ENST00000569148	[[2009552, 2009755], [2011153, 2011259], [2011497, 2011637], [2011797, 2011976]]	[[2009625, 2009755], [2011153, 2011259], [2011497, 2011637], [2011797, 2011907]]
ENST00000570172	[[2009558, 2009755], [2011153, 2011292], [2011497, 2011612], [2011797, 2011841]]	[[2009625, 2009755], [2011153, 2011292], [2011497, 2011612], [2011797, 2011841]]
NM_004548	[[2009516, 2009755], [2011153, 2011292], [2011497, 2011637], [2011797, 2011976]]	[[2009625, 2009755], [2011153, 2011292], [2011497, 2011637], [2011797, 2011907]]

Promoter

Chrom	Start	End	Description
chr16	2009500	2009584	CAGE_peak_1_at_NDUFB10_5end
chr16	2009598	2009610	CAGE_peak_2_at_NDUFB10_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr16	GH16I001900	1900240	1900409	0.62	[{'connected_gene': 'FAHD1', 'score': 33.47}, {'connected_gene': 'HS3ST6', 'score': 12.58}, {'connected_gene': 'MSRB1', 'score': 11.69}, {'connected_gene': 'RPL3L', 'score': 11.65}, {'connected_gene': 'NDUFB10', 'score': 11.65}, {'connected_gene': 'GC16P001892', 'score': 0.44}, {'connected_gene': 'PIR49138', 'score': 0.44}]
chr16	GH16I001901	1900480	1900629	0.52	[{'connected_gene': 'FAHD1', 'score': 31.59}, {'connected_gene': 'HS3ST6', 'score': 12.58}, {'connected_gene': 'MSRB1', 'score': 11.69}, {'connected_gene': 'RPL3L', 'score': 11.65}, {'connected_gene': 'NDUFB10', 'score': 11.65}, {'connected_gene': 'GC16P001892', 'score': 0.44}, {'connected_gene': 'PIR49138', 'score': 0.44}]
chr16	GH16I001863	1863820	1863969	0.62	[{'connected_gene': 'HS3ST6', 'score': 12.47}, {'connected_gene': 'MEIOB', 'score': 12.45}, {'connected_gene': 'MSRB1', 'score': 12.2}, {'connected_gene': 'RPL3L', 'score': 12.18}, {'connected_gene': 'NDUFB10', 'score': 12.17}, {'connected_gene': 'SYNGR3', 'score': 10.5}, {'connected_gene': 'LOC102723890', 'score': 0.44}, {'connected_gene': 'GC16M001851', 'score': 0.44}]
chr16	GH16I001958	1958839	1962037	2.07	[{'connected_gene': 'NDUFB10', 'score': 550.77}, {'connected_gene': 'ENSG00000255513', 'score': 55.62}, {'connected_gene': 'SNHG9', 'score': 46.26}, {'connected_gene': 'ENSG00000261505', 'score': 24.58}, {'connected_gene': 'RPL3L', 'score': 24.16}, {'connected_gene': 'CRAMP1', 'score': 22.94}, {'connected_gene': 'SRRM2', 'score': 21.64}, {'connected_gene': 'ENSG00000260051', 'score': 20.7}, {'connected_gene': 'TELO2', 'score': 19.18}, {'connected_gene': 'TSC2', 'score': 16.59}, {'connected_gene': 'E4F1', 'score': 16.5}, {'connected_gene': 'NUBP2', 'score': 16.3}, {'connected_gene': 'UNKL', 'score': 14.63}, {'connected_gene': 'ERVK13-1', 'score': 14.35}, {'connected_gene': 'IFT140', 'score': 13.64}, {'connected_gene': 'LOC105371055', 'score': 12.95}, {'connected_gene': 'ENSG00000260646', 'score': 12.28}, {'connected_gene': 'UBE2I', 'score': 11.86}, {'connected_gene': 'SPSB3', 'score': 11.58}, {'connected_gene': 'ENSG00000260954', 'score': 11.5}, {'connected_gene': 'ENSG00000261123', 'score': 11.02}, {'connected_gene': 'SNORA64', 'score': 10.73}, {'connected_gene': 'SNHG19', 'score': 10.72}, {'connected_gene': 'NME3', 'score': 10.71}, {'connected_gene': 'TRAF7', 'score': 10.61}, {'connected_gene': 'TBL3', 'score': 10.6}, {'connected_gene': 'LOC105371049', 'score': 10.59}, {'connected_gene': 'ZNF598', 'score': 10.3}, {'connected_gene': 'ENSG00000269937', 'score': 10.01}, {'connected_gene': 'AMDHD2', 'score': 9.77}, {'connected_gene': 'ENSG00000260447', 'score': 9.76}, {'connected_gene': 'GC16M001963', 'score': 0.77}, {'connected_gene': 'GC16M001965', 'score': 0.77}, {'connected_gene': 'SNORA10', 'score': 0.77}]
chr16	GH16I001895	1895872	1896344	0.43	[{'connected_gene': 'PIR49138', 'score': 550.77}, {'connected_gene': 'GC16M001894', 'score': 550.77}, {'connected_gene': 'FAHD1', 'score': 42.65}, {'connected_gene': 'HS3ST6', 'score': 12.55}, {'connected_gene': 'MSRB1', 'score': 12.32}, {'connected_gene': 'RPL3L', 'score': 12.28}, {'connected_gene': 'NDUFB10', 'score': 12.28}, {'connected_gene': 'IGFALS', 'score': 11.28}, {'connected_gene': 'HAGH', 'score': 11.21}, {'connected_gene': 'GC16P001892', 'score': 0.77}]
chr16	GH16I001855	1855330	1856102	0.2	[{'connected_gene': 'GC16M001851', 'score': 550.77}, {'connected_gene': 'FAHD1', 'score': 61.17}, {'connected_gene': 'HAGH', 'score': 34.0}, {'connected_gene': 'HS3ST6', 'score': 12.14}, {'connected_gene': 'MEIOB', 'score': 12.08}, {'connected_gene': 'IGFALS', 'score': 11.96}, {'connected_gene': 'MSRB1', 'score': 11.86}, {'connected_gene': 'RPL3L', 'score': 11.84}, {'connected_gene': 'NDUFB10', 'score': 11.84}, {'connected_gene': 'ENSG00000260541', 'score': 0.39}]