PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000297689	[[94171326, 94173188], [94185921, 94186144]]	[[94171627, 94173016]]
NM_005384	[[94171326, 94173188], [94185921, 94186144]]	[[94171627, 94173016]]
NM_001289999	[[94171326, 94173188], [94186542, 94186908]]	[[94171627, 94173016]]
NM_001290000	[[94171326, 94173188], [94186690, 94186908]]	[[94171627, 94173016]]

Promoter

Chrom	Start	End	Description
chr9	94173193	94173206	CAGE_peak_5_at_NFIL3_5end
chr9	94173455	94173468	CAGE_peak_4_at_NFIL3_5end
chr9	94173479	94173486	CAGE_peak_8_at_NFIL3_5end
chr9	94186085	94186096	CAGE_peak_3_at_NFIL3_5end
chr9	94186101	94186122	CAGE_peak_1_at_NFIL3_5end
chr9	94186131	94186174	CAGE_peak_2_at_NFIL3_5end
chr9	94186324	94186355	CAGE_peak_10_at_NFIL3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I091059	91059469	91062645	1.65	[{'connected_gene': 'SYK', 'score': 5.86}, {'connected_gene': 'ENSG00000228216', 'score': 4.58}, {'connected_gene': 'NFIL3', 'score': 3.15}, {'connected_gene': 'GC09M091073', 'score': 0.39}, {'connected_gene': 'LOC105376144', 'score': 0.21}]
chr9	GH09I090769	90769547	90771020	0.6	[{'connected_gene': 'SYK', 'score': 29.82}, {'connected_gene': 'NFIL3', 'score': 4.44}, {'connected_gene': 'GC09P090934', 'score': 0.77}]
chr9	GH09I091416	91416201	91416648	1.15	[{'connected_gene': 'NFIL3', 'score': 2.12}, {'connected_gene': 'AUH', 'score': 0.23}]
chr9	GH09I091415	91415070	91416128	1.03	[{'connected_gene': 'NFIL3', 'score': 18.98}, {'connected_gene': 'AUH', 'score': 0.23}]
chr9	GH09I091410	91410801	91411800	0.83	[{'connected_gene': 'NFIL3', 'score': 0.39}, {'connected_gene': 'AUH', 'score': 0.25}]
chr9	GH09I091407	91407424	91409768	0.46	[{'connected_gene': 'NFIL3', 'score': 5.3}, {'connected_gene': 'SPTLC1', 'score': 4.65}, {'connected_gene': 'LOC105376146', 'score': 4.57}, {'connected_gene': 'AUH', 'score': 0.25}]
chr9	GH09I091098	91098628	91102487	1.48	[{'connected_gene': 'NFIL3', 'score': 12.85}, {'connected_gene': 'LOC105376146', 'score': 10.62}, {'connected_gene': 'ENSG00000229694', 'score': 5.62}, {'connected_gene': 'SYK', 'score': 2.33}, {'connected_gene': 'LINC00484', 'score': 0.37}, {'connected_gene': 'LOC100129316', 'score': 0.31}]
chr9	GH09I090983	90983819	90985053	0.2	[{'connected_gene': 'NFIL3', 'score': 10.73}, {'connected_gene': 'LOC105376146', 'score': 10.73}, {'connected_gene': 'ENSG00000228216', 'score': 6.75}, {'connected_gene': 'ROR2', 'score': 4.01}, {'connected_gene': 'LOC105376144', 'score': 0.39}]
chr9	GH09I091394	91394824	91397139	1.35	[{'connected_gene': 'NFIL3', 'score': 12.61}, {'connected_gene': 'LOC105376146', 'score': 12.61}, {'connected_gene': 'AUH', 'score': 11.76}, {'connected_gene': 'LINC00484', 'score': 5.87}]
chr9	GH09I091089	91089279	91090714	0.57	[{'connected_gene': 'NFIL3', 'score': 12.21}, {'connected_gene': 'LOC105376146', 'score': 12.21}, {'connected_gene': 'AUH', 'score': 10.41}, {'connected_gene': 'ENSG00000228216', 'score': 4.34}, {'connected_gene': 'LOC100129316', 'score': 0.39}, {'connected_gene': 'LINC00484', 'score': 0.31}]
chr9	GH09I091374	91374999	91375148	0.38	[{'connected_gene': 'NFIL3', 'score': 12.12}, {'connected_gene': 'LOC105376146', 'score': 12.12}, {'connected_gene': 'AUH', 'score': 0.39}]
chr9	GH09I091378	91378206	91379328	0.46	[{'connected_gene': 'NFIL3', 'score': 12.12}, {'connected_gene': 'LOC105376146', 'score': 12.12}, {'connected_gene': 'ENSG00000273381', 'score': 5.58}, {'connected_gene': 'AUH', 'score': 0.37}]
chr9	GH09I091417	91417181	91425856	2.78	[{'connected_gene': 'NFIL3', 'score': 580.97}, {'connected_gene': 'LOC105376146', 'score': 11.66}, {'connected_gene': 'LINC00475', 'score': 10.76}, {'connected_gene': 'SPTLC1', 'score': 4.8}, {'connected_gene': 'AUH', 'score': 0.22}]
chr9	GH09I090987	90987456	90989381	0.49	[{'connected_gene': 'NFIL3', 'score': 10.73}, {'connected_gene': 'LOC105376146', 'score': 10.73}, {'connected_gene': 'LOC105376144', 'score': 0.44}, {'connected_gene': 'ENSG00000228216', 'score': 0.34}]
chr9	GH09I090985	90985261	90986562	0.72	[{'connected_gene': 'NFIL3', 'score': 10.73}, {'connected_gene': 'LOC105376146', 'score': 10.73}, {'connected_gene': 'LOC105376144', 'score': 0.39}, {'connected_gene': 'ENSG00000228216', 'score': 0.34}]
chr9	GH09I090952	90952639	90955051	0.38	[{'connected_gene': 'NFIL3', 'score': 10.69}, {'connected_gene': 'LOC105376146', 'score': 10.69}, {'connected_gene': 'ENSG00000228216', 'score': 9.72}, {'connected_gene': 'LOC105376143', 'score': 0.34}]
chr9	GH09I090951	90951489	90952575	0.2	[{'connected_gene': 'NFIL3', 'score': 10.69}, {'connected_gene': 'LOC105376146', 'score': 10.69}, {'connected_gene': 'ENSG00000228216', 'score': 9.32}, {'connected_gene': 'LOC105376143', 'score': 0.34}]
chr9	GH09I091297	91297859	91299983	0.2	[{'connected_gene': 'NFIL3', 'score': 10.61}, {'connected_gene': 'LOC105376146', 'score': 10.61}, {'connected_gene': 'LINC00484', 'score': 10.02}, {'connected_gene': 'ENSG00000273381', 'score': 5.78}, {'connected_gene': 'GC09M091273', 'score': 0.34}, {'connected_gene': 'AUH', 'score': 0.21}]
chr9	GH09I091300	91300891	91304262	0.92	[{'connected_gene': 'NFIL3', 'score': 14.91}, {'connected_gene': 'LOC105376146', 'score': 10.61}, {'connected_gene': 'LINC00484', 'score': 10.45}, {'connected_gene': 'ENSG00000273381', 'score': 5.52}, {'connected_gene': 'GC09M091273', 'score': 0.31}, {'connected_gene': 'AUH', 'score': 0.22}]
chr9	GH09I091126	91126569	91127529	0.51	[{'connected_gene': 'NFIL3', 'score': 11.04}, {'connected_gene': 'LOC105376146', 'score': 11.04}, {'connected_gene': 'ENSG00000229694', 'score': 0.44}, {'connected_gene': 'LINC00484', 'score': 0.44}, {'connected_gene': 'ENSG00000237422', 'score': 0.28}, {'connected_gene': 'LOC100507103', 'score': 0.28}]
chr9	GH09I091070	91070818	91073203	1.51	[{'connected_gene': 'NFIL3', 'score': 10.58}, {'connected_gene': 'LOC105376146', 'score': 10.58}, {'connected_gene': 'GC09M091073', 'score': 0.77}, {'connected_gene': 'LOC100129316', 'score': 0.77}, {'connected_gene': 'LOC105376144', 'score': 0.19}]
chr9	GH09I091085	91085074	91085148	0.2	[{'connected_gene': 'NFIL3', 'score': 11.87}, {'connected_gene': 'LOC105376146', 'score': 11.87}, {'connected_gene': 'LOC100129316', 'score': 0.44}, {'connected_gene': 'LINC00484', 'score': 0.29}]
chr9	GH09I090907	90907838	90912389	0.65	[{'connected_gene': 'NFIL3', 'score': 11.17}, {'connected_gene': 'LOC105376146', 'score': 11.17}, {'connected_gene': 'ENSG00000228216', 'score': 9.34}, {'connected_gene': 'GC09P090926', 'score': 0.39}, {'connected_gene': 'PIR33467', 'score': 0.21}]
chr9	GH09I091426	91426200	91426600	1	[{'connected_gene': 'NFIL3', 'score': 561.63}, {'connected_gene': 'LOC105376146', 'score': 550.77}, {'connected_gene': 'PIR33956', 'score': 0.21}]
chr9	GH09I091191	91191030	91200201	1.87	[{'connected_gene': 'NFIL3', 'score': 18.75}, {'connected_gene': 'LINC00484', 'score': 11.35}, {'connected_gene': 'LOC105376146', 'score': 11.08}, {'connected_gene': 'LINC00475', 'score': 10.64}, {'connected_gene': 'MTND4P15', 'score': 10.4}, {'connected_gene': 'SYK', 'score': 7.46}, {'connected_gene': 'ENSG00000273381', 'score': 6.62}, {'connected_gene': 'LOC100507103', 'score': 6.24}, {'connected_gene': 'ENSG00000230147', 'score': 0.31}]
chr9	GH09I091265	91265189	91268744	0.31	[{'connected_gene': 'LOC105376146', 'score': 10.92}, {'connected_gene': 'NFIL3', 'score': 10.92}, {'connected_gene': 'LINC00484', 'score': 10.04}, {'connected_gene': 'ENSG00000229694', 'score': 5.98}, {'connected_gene': 'ENSG00000273381', 'score': 5.83}, {'connected_gene': 'LOC100507103', 'score': 5.03}, {'connected_gene': 'GC09M091273', 'score': 0.39}, {'connected_gene': 'AUH', 'score': 0.16}]
chr9	GH09I090929	90929816	90930697	0.2	[{'connected_gene': 'LOC105376143', 'score': 550.77}, {'connected_gene': 'NFIL3', 'score': 10.91}, {'connected_gene': 'LOC105376146', 'score': 10.91}, {'connected_gene': 'GC09P090926', 'score': 0.44}]
chr9	GH09I091186	91186307	91188728	1.27	[{'connected_gene': 'LINC00484', 'score': 12.13}, {'connected_gene': 'ENSG00000229694', 'score': 6.1}, {'connected_gene': 'NFIL3', 'score': 5.31}, {'connected_gene': 'SYK', 'score': 4.19}, {'connected_gene': 'ENSG00000230147', 'score': 0.37}, {'connected_gene': 'ENSG00000273381', 'score': 0.34}]
chr9	GH09I091174	91174359	91175605	0.63	[{'connected_gene': 'LINC00484', 'score': 11.68}, {'connected_gene': 'NFIL3', 'score': 10.82}, {'connected_gene': 'LOC105376146', 'score': 10.82}, {'connected_gene': 'LOC100507103', 'score': 8.34}, {'connected_gene': 'ENSG00000230147', 'score': 0.77}, {'connected_gene': 'ENSG00000273381', 'score': 0.28}, {'connected_gene': 'ENSG00000229694', 'score': 0.22}]
chr9	GH09I091177	91177340	91181164	0.69	[{'connected_gene': 'LINC00484', 'score': 12.12}, {'connected_gene': 'LOC105376146', 'score': 10.82}, {'connected_gene': 'NFIL3', 'score': 10.82}, {'connected_gene': 'LOC100507103', 'score': 6.84}, {'connected_gene': 'AUH', 'score': 5.24}, {'connected_gene': 'ENSG00000230147', 'score': 0.44}, {'connected_gene': 'ENSG00000273381', 'score': 0.29}, {'connected_gene': 'ENSG00000229694', 'score': 0.21}]
chr9	GH09I091150	91150067	91153000	1.49	[{'connected_gene': 'LINC00484', 'score': 12.66}, {'connected_gene': 'LOC100507103', 'score': 7.15}, {'connected_gene': 'SYK', 'score': 5.48}, {'connected_gene': 'NFIL3', 'score': 3.0}, {'connected_gene': 'ENSG00000237422', 'score': 0.39}, {'connected_gene': 'ENSG00000229694', 'score': 0.29}]
chr9	GH09I091146	91146973	91148400	1.5	[{'connected_gene': 'LINC00484', 'score': 12.54}, {'connected_gene': 'ENSG00000229694', 'score': 10.64}, {'connected_gene': 'LOC100507103', 'score': 9.11}, {'connected_gene': 'SYK', 'score': 4.9}, {'connected_gene': 'NFIL3', 'score': 3.1}, {'connected_gene': 'ENSG00000237422', 'score': 0.37}]
chr9	GH09I091147	91146590	91146906	0.63	[{'connected_gene': 'ENSG00000229694', 'score': 13.42}, {'connected_gene': 'SYK', 'score': 3.61}, {'connected_gene': 'NFIL3', 'score': 1.99}, {'connected_gene': 'ENSG00000237422', 'score': 0.37}, {'connected_gene': 'LOC100507103', 'score': 0.37}, {'connected_gene': 'LINC00484', 'score': 0.31}]
chr9	GH09I090964	90964173	90967280	0.85	[{'connected_gene': 'ENSG00000228216', 'score': 572.46}, {'connected_gene': 'NFIL3', 'score': 11.22}, {'connected_gene': 'LOC105376146', 'score': 11.22}, {'connected_gene': 'ROR2', 'score': 4.07}, {'connected_gene': 'LOC105376144', 'score': 0.29}]
chr9	GH09I090969	90969167	90971649	0.51	[{'connected_gene': 'ENSG00000228216', 'score': 20.12}, {'connected_gene': 'NFIL3', 'score': 11.22}, {'connected_gene': 'LOC105376146', 'score': 11.22}, {'connected_gene': 'LOC105376144', 'score': 0.31}]
chr9	GH09I091073	91073219	91073337	0.51	[{'connected_gene': 'GC09M091073', 'score': 550.77}, {'connected_gene': 'LOC100129316', 'score': 550.77}, {'connected_gene': 'NFIL3', 'score': 10.58}, {'connected_gene': 'LOC105376146', 'score': 10.58}, {'connected_gene': 'LOC105376144', 'score': 0.18}]