PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000240055	[[104510854, 104513547], [104514177, 104514257], [104515017, 104515099], [104517003, 104517201], [104519891, 104520022], [104522201, 104522295], [104529225, 104529310], [104531918, 104532067]]	[[104513514, 104513547], [104514177, 104514257], [104515017, 104515099], [104517003, 104517201], [104519891, 104520022], [104522201, 104522295], [104529225, 104529231]]
ENST00000551727	[[104513132, 104513547], [104514177, 104514257], [104515017, 104515099], [104517003, 104517201], [104519891, 104520022], [104522201, 104522295], [104529225, 104529310], [104531153, 104531795]]	[[104513514, 104513547], [104514177, 104514257], [104515017, 104515099], [104517003, 104517201], [104519891, 104520022], [104522201, 104522295], [104529225, 104529231]]
ENST00000550189	[[104515031, 104515099], [104517003, 104517201], [104519891, 104520022], [104522201, 104522390]]	None
ENST00000551446	[[104517041, 104517201], [104519891, 104520022], [104522201, 104522295], [104525531, 104525616], [104529225, 104529310], [104531918, 104531981]]	[[104517041, 104517201], [104519891, 104520022], [104522201, 104522295], [104525531, 104525540]]
ENST00000550881	[[104524909, 104525616], [104529225, 104529310], [104531918, 104532019]]	None
NM_006166	[[104510857, 104513547], [104514177, 104514257], [104515017, 104515099], [104517003, 104517201], [104519891, 104520022], [104522201, 104522295], [104529225, 104529310], [104531918, 104532040]]	[[104513514, 104513547], [104514177, 104514257], [104515017, 104515099], [104517003, 104517201], [104519891, 104520022], [104522201, 104522295], [104529225, 104529231]]

Promoter

Chrom	Start	End	Description
chr12	104531768	104531782	CAGE_peak_7_at_NFYB_5end
chr12	104531785	104531812	CAGE_peak_3_at_NFYB_5end
chr12	104531823	104531849	CAGE_peak_5_at_NFYB_5end
chr12	104531854	104531893	CAGE_peak_2_at_NFYB_5end
chr12	104531945	104531996	CAGE_peak_1_at_NFYB_5end
chr12	104532004	104532033	CAGE_peak_4_at_NFYB_5end
chr12	104532062	104532071	CAGE_peak_6_at_NFYB_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I103964	103964391	103967512	2.11	[{'connected_gene': 'TDG', 'score': 600.16}, {'connected_gene': 'C12orf73', 'score': 563.48}, {'connected_gene': 'NFYB', 'score': 11.8}, {'connected_gene': 'TTC41P', 'score': 10.96}, {'connected_gene': 'HSP90B1', 'score': 10.96}, {'connected_gene': 'GC12P104022', 'score': 0.22}]
chr12	GH12I104254	104254876	104256860	0.63	[{'connected_gene': 'TDG', 'score': 16.98}, {'connected_gene': 'WASHC4', 'score': 14.0}, {'connected_gene': 'NFYB', 'score': 6.06}, {'connected_gene': 'EID3', 'score': 5.72}, {'connected_gene': 'RPL18AP3', 'score': 0.44}, {'connected_gene': 'TXNRD1', 'score': 0.26}]
chr12	GH12I104316	104316662	104318102	0.31	[{'connected_gene': 'EID3', 'score': 40.53}, {'connected_gene': 'NFYB', 'score': 5.92}, {'connected_gene': 'TDG', 'score': 5.25}, {'connected_gene': 'GC12P104350', 'score': 0.29}, {'connected_gene': 'PIR31122', 'score': 0.29}, {'connected_gene': 'TXNRD1', 'score': 0.15}]
chr12	GH12I104054	104054907	104055712	0.38	[{'connected_gene': 'NFYB', 'score': 11.22}, {'connected_gene': 'TDG', 'score': 11.09}, {'connected_gene': 'C12orf73', 'score': 6.0}, {'connected_gene': 'GC12M104037', 'score': 0.44}, {'connected_gene': 'GLT8D2', 'score': 0.44}, {'connected_gene': 'GC12M104050', 'score': 0.39}, {'connected_gene': 'PIR60229', 'score': 0.34}, {'connected_gene': 'GC12P104035', 'score': 0.34}, {'connected_gene': 'GC12P104034', 'score': 0.34}, {'connected_gene': 'GC12P104033', 'score': 0.34}, {'connected_gene': 'GC12P104032', 'score': 0.34}, {'connected_gene': 'GC12P104022', 'score': 0.29}]
chr12	GH12I104055	104055800	104057399	0.79	[{'connected_gene': 'NFYB', 'score': 11.22}, {'connected_gene': 'TDG', 'score': 11.09}, {'connected_gene': 'NT5DC3', 'score': 9.45}, {'connected_gene': 'GC12M104037', 'score': 0.44}, {'connected_gene': 'GC12M104050', 'score': 0.44}, {'connected_gene': 'GLT8D2', 'score': 0.44}, {'connected_gene': 'PIR60229', 'score': 0.31}, {'connected_gene': 'GC12P104035', 'score': 0.31}, {'connected_gene': 'GC12P104034', 'score': 0.31}, {'connected_gene': 'GC12P104033', 'score': 0.31}, {'connected_gene': 'GC12P104032', 'score': 0.31}, {'connected_gene': 'GC12P104022', 'score': 0.29}]
chr12	GH12I104136	104136133	104139386	1.98	[{'connected_gene': 'NFYB', 'score': 556.21}, {'connected_gene': 'TDG', 'score': 27.79}, {'connected_gene': 'WASHC4', 'score': 21.03}, {'connected_gene': 'RNA5SP370', 'score': 0.39}]
chr12	GH12I104351	104351840	104352682	0.46	[{'connected_gene': 'NFYB', 'score': 5.9}, {'connected_gene': 'TDG', 'score': 5.24}, {'connected_gene': 'GC12P104350', 'score': 0.77}, {'connected_gene': 'PIR31122', 'score': 0.77}, {'connected_gene': 'GC12P104371', 'score': 0.37}]
chr12	GH12I104093	104093798	104094939	0.2	[{'connected_gene': 'NFYB', 'score': 11.59}, {'connected_gene': 'GC12M104073', 'score': 0.39}, {'connected_gene': 'HCFC2', 'score': 0.31}, {'connected_gene': 'RNA5SP370', 'score': 0.29}]
chr12	GH12I104135	104135001	104135200	0.43	[{'connected_gene': 'NFYB', 'score': 0.77}, {'connected_gene': 'RNA5SP370', 'score': 0.44}]
chr12	GH12I104985	104985619	104987903	1.98	[{'connected_gene': 'C12orf45', 'score': 561.39}, {'connected_gene': 'LOC105369952', 'score': 550.77}, {'connected_gene': 'SLC41A2', 'score': 15.43}, {'connected_gene': 'NFYB', 'score': 11.73}, {'connected_gene': 'ALDH1L2', 'score': 10.58}, {'connected_gene': 'PIR60982', 'score': 0.77}, {'connected_gene': 'GC12M104965', 'score': 0.44}]
chr12	GH12I104119	104119365	104119569	0.4	[{'connected_gene': 'RNA5SP370', 'score': 0.44}, {'connected_gene': 'NFYB', 'score': 0.37}, {'connected_gene': 'GC12M104073', 'score': 0.28}]
chr12	GH12I104120	104120459	104121971	0.49	[{'connected_gene': 'RNA5SP370', 'score': 0.77}, {'connected_gene': 'NFYB', 'score': 0.37}, {'connected_gene': 'GC12M104073', 'score': 0.28}]
chr12	GH12I104063	104063204	104066012	2.06	[{'connected_gene': 'GC12M104037', 'score': 550.77}, {'connected_gene': 'GLT8D2', 'score': 550.77}, {'connected_gene': 'GC12M104050', 'score': 550.77}, {'connected_gene': 'HCFC2', 'score': 550.77}, {'connected_gene': 'NFYB', 'score': 15.84}, {'connected_gene': 'C12orf73', 'score': 6.09}]