PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000366595	[[236139129, 236141288], [236142294, 236142407], [236143121, 236143245], [236143795, 236143953], [236144910, 236145082], [236148678, 236148805], [236154185, 236154358], [236156944, 236157172], [236187369, 236187513], [236189195, 236189441], [236192849, 236193050], [236195700, 236195952], [236201403, 236201553], [236205209, 236205592], [236208756, 236208983], [236211989, 236212289], [236228154, 236228409]]	[[236141166, 236141288], [236142294, 236142407], [236143121, 236143245], [236143795, 236143953], [236144910, 236145082], [236148678, 236148805], [236154185, 236154358], [236156944, 236157172], [236187369, 236187513], [236189195, 236189441], [236192849, 236193050], [236195700, 236195952], [236201403, 236201553], [236205209, 236205592], [236208756, 236208983], [236211989, 236212289], [236228154, 236228379]]
ENST00000264187	[[236139129, 236141288], [236142294, 236142407], [236143121, 236143245], [236143795, 236143953], [236144910, 236145082], [236148678, 236148805], [236154185, 236154358], [236156944, 236157172], [236175220, 236175343], [236176710, 236176860], [236180447, 236180573], [236187369, 236187513], [236189195, 236189441], [236192849, 236193050], [236195700, 236195952], [236201403, 236201553], [236205209, 236205592], [236208756, 236208983], [236211989, 236212289], [236228154, 236228462]]	[[236141166, 236141288], [236142294, 236142407], [236143121, 236143245], [236143795, 236143953], [236144910, 236145082], [236148678, 236148805], [236154185, 236154358], [236156944, 236157172], [236175220, 236175343], [236176710, 236176860], [236180447, 236180573], [236187369, 236187513], [236189195, 236189441], [236192849, 236193050], [236195700, 236195952], [236201403, 236201553], [236205209, 236205592], [236208756, 236208983], [236211989, 236212289], [236228154, 236228379]]
NM_002508	[[236139129, 236141288], [236142294, 236142407], [236143121, 236143245], [236143795, 236143953], [236144910, 236145082], [236148678, 236148805], [236154185, 236154358], [236156944, 236157172], [236175220, 236175343], [236176710, 236176860], [236180447, 236180573], [236187369, 236187513], [236189195, 236189441], [236192849, 236193050], [236195700, 236195952], [236201403, 236201553], [236205209, 236205592], [236208756, 236208983], [236211989, 236212289], [236228154, 236228481]]	[[236141166, 236141288], [236142294, 236142407], [236143121, 236143245], [236143795, 236143953], [236144910, 236145082], [236148678, 236148805], [236154185, 236154358], [236156944, 236157172], [236175220, 236175343], [236176710, 236176860], [236180447, 236180573], [236187369, 236187513], [236189195, 236189441], [236192849, 236193050], [236195700, 236195952], [236201403, 236201553], [236205209, 236205592], [236208756, 236208983], [236211989, 236212289], [236228154, 236228379]]

Promoter

Chrom	Start	End	Description
chr1	236228379	236228402	CAGE_peak_1_at_NID1_5end
chr1	236228403	236228414	CAGE_peak_3_at_NID1_5end
chr1	236228417	236228446	CAGE_peak_2_at_NID1_5end
chr1	236228490	236228507	CAGE_peak_4_at_NID1_5end
chr1	236228513	236228516	CAGE_peak_5_at_NID1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I236090	236090293	236091688	0.68	[{'connected_gene': 'ACTN2', 'score': 9.32}, {'connected_gene': 'NID1', 'score': 5.71}, {'connected_gene': 'LOC343508', 'score': 0.37}]
chr1	GH01I236062	236062800	236069062	2.79	[{'connected_gene': 'NID1', 'score': 555.45}, {'connected_gene': 'GC01P236064', 'score': 550.77}, {'connected_gene': 'ARID4B', 'score': 66.39}, {'connected_gene': 'ENSG00000273058', 'score': 43.03}, {'connected_gene': 'GGPS1', 'score': 32.23}, {'connected_gene': 'ENSG00000230325', 'score': 27.24}, {'connected_gene': 'HEATR1', 'score': 25.01}, {'connected_gene': 'RPS21P1', 'score': 23.66}, {'connected_gene': 'MTR', 'score': 19.29}, {'connected_gene': 'LYST', 'score': 2.71}, {'connected_gene': 'LGALS8', 'score': 2.56}, {'connected_gene': 'GPR137B', 'score': 2.15}, {'connected_gene': 'LOC343508', 'score': 0.26}]
chr1	GH01I236014	236014678	236017251	0.65	[{'connected_gene': 'NID1', 'score': 16.8}, {'connected_gene': 'ENSG00000252822', 'score': 11.72}, {'connected_gene': 'LYST', 'score': 4.79}, {'connected_gene': 'LOC105373212', 'score': 0.26}]
chr1	GH01I236017	236017771	236022390	0.87	[{'connected_gene': 'NID1', 'score': 15.51}, {'connected_gene': 'ENSG00000252822', 'score': 11.19}, {'connected_gene': 'LYST', 'score': 10.16}, {'connected_gene': 'LOC105373212', 'score': 0.25}]
chr1	GH01I236008	236008982	236011169	0.97	[{'connected_gene': 'NID1', 'score': 16.15}, {'connected_gene': 'ENSG00000252822', 'score': 11.69}, {'connected_gene': 'LOC105373212', 'score': 0.28}]
chr1	GH01I236039	236039512	236040616	1.1	[{'connected_gene': 'NID1', 'score': 17.65}, {'connected_gene': 'ENSG00000252822', 'score': 12.55}, {'connected_gene': 'RNU5E-2P', 'score': 10.0}, {'connected_gene': 'LOC105373212', 'score': 0.2}]
chr1	GH01I236516	236516618	236518914	1.8	[{'connected_gene': 'LGALS8', 'score': 557.13}, {'connected_gene': 'HEATR1', 'score': 40.47}, {'connected_gene': 'ENSG00000230325', 'score': 31.02}, {'connected_gene': 'ENSG00000273058', 'score': 22.55}, {'connected_gene': 'MTR', 'score': 20.37}, {'connected_gene': 'NID1', 'score': 12.39}, {'connected_gene': 'RPL35P1', 'score': 10.34}, {'connected_gene': 'LDHAP2', 'score': 10.32}, {'connected_gene': 'GC01P236501', 'score': 0.37}]
chr1	GH01I236096	236096641	236098161	0.43	[{'connected_gene': 'LGALS8', 'score': 20.8}, {'connected_gene': 'LGALS8-AS1', 'score': 10.65}, {'connected_gene': 'ARID4B', 'score': 10.27}, {'connected_gene': 'LOC343508', 'score': 0.39}, {'connected_gene': 'NID1', 'score': 0.29}]
chr1	GH01I236109	236109401	236109800	0.95	[{'connected_gene': 'LOC343508', 'score': 557.11}, {'connected_gene': 'NID1', 'score': 0.26}]
chr1	GH01I236003	236003581	236004476	0.54	[{'connected_gene': 'LOC105373212', 'score': 0.29}, {'connected_gene': 'ENSG00000252822', 'score': 0.22}, {'connected_gene': 'NID1', 'score': 0.21}]
chr1	GH01I235986	235986800	235987600	1.2	[{'connected_gene': 'RNU5E-2P', 'score': 10.39}, {'connected_gene': 'GPR137B', 'score': 2.25}, {'connected_gene': 'LOC105373212', 'score': 0.39}, {'connected_gene': 'ENSG00000252822', 'score': 0.19}, {'connected_gene': 'NID1', 'score': 0.18}]
chr1	GH01I235990	235990582	235990730	0.38	[{'connected_gene': 'RNU5E-2P', 'score': 10.9}, {'connected_gene': 'LOC105373212', 'score': 0.37}, {'connected_gene': 'NID1', 'score': 0.19}, {'connected_gene': 'ENSG00000252822', 'score': 0.19}]
chr1	GH01I236103	236103741	236103910	0.73	[{'connected_gene': 'LGALS8-AS1', 'score': 10.65}, {'connected_gene': 'LGALS8', 'score': 10.65}, {'connected_gene': 'LOC343508', 'score': 0.44}, {'connected_gene': 'NID1', 'score': 0.28}]
chr1	GH01I235997	235997715	236002302	1.59	[{'connected_gene': 'ENSG00000273058', 'score': 10.62}, {'connected_gene': 'ENSG00000229291', 'score': 4.91}, {'connected_gene': 'GPR137B', 'score': 2.31}, {'connected_gene': 'LOC105373212', 'score': 0.31}, {'connected_gene': 'ENSG00000252822', 'score': 0.21}, {'connected_gene': 'NID1', 'score': 0.2}]
chr1	GH01I236514	236514578	236516354	1.09	[{'connected_gene': 'ENSG00000230325', 'score': 21.92}, {'connected_gene': 'HEATR1', 'score': 19.21}, {'connected_gene': 'ENSG00000273058', 'score': 13.92}, {'connected_gene': 'NID1', 'score': 12.39}, {'connected_gene': 'LGALS8', 'score': 8.55}, {'connected_gene': 'GC01P236501', 'score': 0.39}]
chr1	GH01I236026	236026475	236026698	0.22	[{'connected_gene': 'ENSG00000252822', 'score': 0.29}, {'connected_gene': 'NID1', 'score': 0.28}, {'connected_gene': 'LOC105373212', 'score': 0.23}]
chr1	GH01I236035	236035642	236036134	0.31	[{'connected_gene': 'ENSG00000252822', 'score': 0.34}, {'connected_gene': 'NID1', 'score': 0.31}, {'connected_gene': 'LOC105373212', 'score': 0.21}]
chr1	GH01I236051	236051262	236051859	0.31	[{'connected_gene': 'ENSG00000252822', 'score': 0.44}, {'connected_gene': 'NID1', 'score': 0.39}, {'connected_gene': 'LOC105373212', 'score': 0.18}]
chr1	GH01I236057	236057867	236058868	1.2	[{'connected_gene': 'ENSG00000252822', 'score': 0.77}, {'connected_gene': 'NID1', 'score': 0.44}, {'connected_gene': 'LOC105373212', 'score': 0.17}]
chr1	GH01I236030	236030701	236030850	0.2	[{'connected_gene': 'ENSG00000252822', 'score': 0.31}, {'connected_gene': 'NID1', 'score': 0.29}, {'connected_gene': 'LOC105373212', 'score': 0.22}]
chr1	GH01I235983	235983037	235986118	1.24	[{'connected_gene': 'ENSG00000252822', 'score': 11.25}, {'connected_gene': 'NID1', 'score': 11.25}, {'connected_gene': 'RNU5E-2P', 'score': 11.19}, {'connected_gene': 'GNG4', 'score': 10.44}, {'connected_gene': 'ENSG00000229291', 'score': 4.58}, {'connected_gene': 'GPR137B', 'score': 2.73}, {'connected_gene': 'LOC105373212', 'score': 0.39}]
chr1	GH01I235980	235980401	235981400	0.58	[{'connected_gene': 'ENSG00000252822', 'score': 11.24}, {'connected_gene': 'NID1', 'score': 11.23}, {'connected_gene': 'RNU5E-2P', 'score': 11.19}, {'connected_gene': 'GNG4', 'score': 10.44}, {'connected_gene': 'LOC105373212', 'score': 0.44}]