PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000380871	[[23536205, 23539152], [23540116, 23540440]]	[[23538733, 23539152], [23540116, 23540402]]
ENST00000523261	[[23538500, 23539152], [23540116, 23540144], [23540369, 23540402]]	[[23538733, 23539152], [23540116, 23540144], [23540369, 23540402]]
NM_001256339	[[23536205, 23539152], [23540116, 23540144], [23540369, 23540402]]	[[23538733, 23539152], [23540116, 23540144], [23540369, 23540402]]
NR_046072	[[23536205, 23538655], [23540416, 23540434]]	None
NM_006167	[[23536205, 23539152], [23540116, 23540450]]	[[23538733, 23539152], [23540116, 23540402]]

Promoter

Chrom	Start	End	Description
chr8	23540441	23540466	CAGE_peak_1_at_NKX3-1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I023692	23692748	23692877	0.67	[{'connected_gene': 'ENTPD4', 'score': 11.18}, {'connected_gene': 'LOC107986927', 'score': 10.55}, {'connected_gene': 'LOXL2', 'score': 10.35}, {'connected_gene': 'NKX3-1', 'score': 0.44}, {'connected_gene': 'NKX2-6', 'score': 0.39}]
chr8	GH08I023891	23891811	23893497	0.58	[{'connected_gene': 'STC1', 'score': 10.83}, {'connected_gene': 'NKX3-1', 'score': 9.83}, {'connected_gene': 'GC08P023881', 'score': 0.39}, {'connected_gene': 'GC08P023963', 'score': 0.19}]
chr8	GH08I023888	23888986	23890731	0.77	[{'connected_gene': 'STC1', 'score': 10.83}, {'connected_gene': 'NKX3-1', 'score': 9.83}, {'connected_gene': 'GC08P023881', 'score': 0.44}, {'connected_gene': 'GC08P023963', 'score': 0.19}]
chr8	GH08I023486	23486921	23488119	0.43	[{'connected_gene': 'SLC25A37', 'score': 22.3}, {'connected_gene': 'ENTPD4', 'score': 16.26}, {'connected_gene': 'ENSG00000253390', 'score': 10.95}, {'connected_gene': 'NKX3-1', 'score': 10.41}, {'connected_gene': 'LOC646708', 'score': 0.77}, {'connected_gene': 'LOC105379327', 'score': 0.44}]
chr8	GH08I023488	23488658	23488774	0.2	[{'connected_gene': 'SLC25A37', 'score': 11.57}, {'connected_gene': 'ENTPD4', 'score': 10.93}, {'connected_gene': 'ENSG00000253390', 'score': 10.93}, {'connected_gene': 'NKX3-1', 'score': 10.41}, {'connected_gene': 'LOC646708', 'score': 0.44}, {'connected_gene': 'LOC105379327', 'score': 0.44}]
chr8	GH08I023557	23557683	23562501	1.55	[{'connected_gene': 'SLC25A37', 'score': 19.15}, {'connected_gene': 'ENTPD4', 'score': 14.79}, {'connected_gene': 'ENSG00000253390', 'score': 10.67}, {'connected_gene': 'NKX3-1', 'score': 10.56}, {'connected_gene': 'RNU4-71P', 'score': 10.46}, {'connected_gene': 'ENSG00000253200', 'score': 5.06}, {'connected_gene': 'EGR3', 'score': 5.03}, {'connected_gene': 'TNFRSF10C', 'score': 1.6}, {'connected_gene': 'TNFRSF10B', 'score': 1.54}, {'connected_gene': 'GC08M023551', 'score': 0.44}]
chr8	GH08I023491	23491970	23492075	0.2	[{'connected_gene': 'SLC25A37', 'score': 11.64}, {'connected_gene': 'ENTPD4', 'score': 11.11}, {'connected_gene': 'ENSG00000253390', 'score': 11.11}, {'connected_gene': 'NKX3-1', 'score': 10.38}, {'connected_gene': 'LOC105379327', 'score': 0.77}, {'connected_gene': 'LOC646708', 'score': 0.44}]
chr8	GH08I023489	23489504	23490513	0.85	[{'connected_gene': 'SLC25A37', 'score': 24.54}, {'connected_gene': 'ENTPD4', 'score': 11.11}, {'connected_gene': 'ENSG00000253390', 'score': 11.11}, {'connected_gene': 'NKX3-1', 'score': 10.41}, {'connected_gene': 'LOC105379327', 'score': 0.77}, {'connected_gene': 'LOC646708', 'score': 0.44}]
chr8	GH08I023490	23490588	23490737	0.63	[{'connected_gene': 'SLC25A37', 'score': 11.64}, {'connected_gene': 'ENTPD4', 'score': 11.11}, {'connected_gene': 'ENSG00000253390', 'score': 11.11}, {'connected_gene': 'NKX3-1', 'score': 10.38}, {'connected_gene': 'LOC105379327', 'score': 0.77}, {'connected_gene': 'LOC646708', 'score': 0.44}]
chr8	GH08I023499	23498207	23498396	0.62	[{'connected_gene': 'SLC25A37', 'score': 16.55}, {'connected_gene': 'NKX3-1', 'score': 10.89}, {'connected_gene': 'ENSG00000253390', 'score': 10.44}, {'connected_gene': 'ENTPD4', 'score': 10.43}, {'connected_gene': 'LOXL2', 'score': 4.9}, {'connected_gene': 'LOC105379327', 'score': 0.77}]
chr8	GH08I023502	23498428	23498577	0.82	[{'connected_gene': 'SLC25A37', 'score': 12.3}, {'connected_gene': 'NKX3-1', 'score': 10.89}, {'connected_gene': 'ENSG00000253390', 'score': 10.44}, {'connected_gene': 'ENTPD4', 'score': 10.43}, {'connected_gene': 'LOXL2', 'score': 4.9}, {'connected_gene': 'LOC105379327', 'score': 0.77}]
chr8	GH08I023501	23496902	23497028	0.31	[{'connected_gene': 'SLC25A37', 'score': 12.3}, {'connected_gene': 'NKX3-1', 'score': 10.88}, {'connected_gene': 'ENTPD4', 'score': 10.68}, {'connected_gene': 'ENSG00000253390', 'score': 10.68}, {'connected_gene': 'LOC105379327', 'score': 0.77}]
chr8	GH08I023566	23566067	23569271	0.58	[{'connected_gene': 'SLC25A37', 'score': 19.22}, {'connected_gene': 'NKX3-1', 'score': 10.42}, {'connected_gene': 'GC08M023551', 'score': 0.39}, {'connected_gene': 'RNU4-71P', 'score': 0.29}]
chr8	GH08I023760	23760818	23763735	1.53	[{'connected_gene': 'NKX3-1', 'score': 11.05}, {'connected_gene': 'STC1', 'score': 10.17}, {'connected_gene': 'SLC25A37', 'score': 9.66}, {'connected_gene': 'ENTPD4', 'score': 2.04}, {'connected_gene': 'LOC101929258', 'score': 0.37}, {'connected_gene': 'ENSG00000271118', 'score': 0.26}, {'connected_gene': 'ENSG00000253471', 'score': 0.22}]
chr8	GH08I023754	23754868	23755831	1.33	[{'connected_gene': 'NKX3-1', 'score': 10.47}, {'connected_gene': 'SLC25A37', 'score': 10.1}, {'connected_gene': 'ENTPD4', 'score': 1.68}, {'connected_gene': 'LOC101929258', 'score': 0.39}, {'connected_gene': 'ENSG00000253471', 'score': 0.25}, {'connected_gene': 'ENSG00000271118', 'score': 0.23}]
chr8	GH08I023513	23513077	23513213	0.2	[{'connected_gene': 'NKX3-1', 'score': 10.37}, {'connected_gene': 'SLC25A37', 'score': 0.37}, {'connected_gene': 'LOC105379327', 'score': 0.37}]
chr8	GH08I023516	23516148	23517184	0.94	[{'connected_gene': 'NKX3-1', 'score': 10.37}, {'connected_gene': 'ENSG00000253390', 'score': 5.25}, {'connected_gene': 'SLC25A37', 'score': 0.39}, {'connected_gene': 'LOC105379327', 'score': 0.34}]
chr8	GH08I023514	23514400	23514601	0.87	[{'connected_gene': 'NKX3-1', 'score': 10.37}, {'connected_gene': 'ENSG00000253390', 'score': 5.54}, {'connected_gene': 'SLC25A37', 'score': 0.39}, {'connected_gene': 'LOC105379327', 'score': 0.34}]
chr8	GH08I023750	23750103	23753050	1.02	[{'connected_gene': 'NKX3-1', 'score': 10.49}, {'connected_gene': 'SLC25A37', 'score': 10.1}, {'connected_gene': 'LOC101929258', 'score': 5.39}, {'connected_gene': 'ENSG00000253471', 'score': 0.26}, {'connected_gene': 'ENSG00000271118', 'score': 0.23}]
chr8	GH08I023682	23682000	23683557	1.87	[{'connected_gene': 'NKX3-1', 'score': 560.02}, {'connected_gene': 'NKX2-6', 'score': 8.46}, {'connected_gene': 'GC08M023649', 'score': 0.29}]
chr8	GH08I023759	23759107	23760408	0.51	[{'connected_gene': 'NKX3-1', 'score': 11.05}, {'connected_gene': 'LOC101929258', 'score': 0.37}, {'connected_gene': 'ENSG00000271118', 'score': 0.25}, {'connected_gene': 'ENSG00000253471', 'score': 0.23}]
chr8	GH08I023707	23706248	23706397	0.31	[{'connected_gene': 'NKX2-6', 'score': 550.77}, {'connected_gene': 'ENSG00000253471', 'score': 550.77}, {'connected_gene': 'NKX3-1', 'score': 0.34}]
chr8	GH08I023695	23695812	23695897	0.46	[{'connected_gene': 'NKX2-6', 'score': 0.39}, {'connected_gene': 'NKX3-1', 'score': 0.39}]
chr8	GH08I023708	23706088	23706237	0.43	[{'connected_gene': 'NKX2-6', 'score': 550.77}, {'connected_gene': 'ENSG00000253471', 'score': 550.77}, {'connected_gene': 'NKX3-1', 'score': 0.34}]
chr8	GH08I023706	23706559	23706618	0.61	[{'connected_gene': 'NKX2-6', 'score': 550.77}, {'connected_gene': 'ENSG00000253471', 'score': 550.77}, {'connected_gene': 'NKX3-1', 'score': 0.34}]
chr8	GH08I023496	23494288	23494437	1.21	[{'connected_gene': 'LOC105379327', 'score': 550.77}, {'connected_gene': 'ENSG00000253200', 'score': 34.53}, {'connected_gene': 'ENTPD4', 'score': 30.5}, {'connected_gene': 'C8orf58', 'score': 24.66}, {'connected_gene': 'LOC107986927', 'score': 13.22}, {'connected_gene': 'CCAR2', 'score': 12.62}, {'connected_gene': 'SLC25A37', 'score': 11.66}, {'connected_gene': 'ENSG00000253390', 'score': 11.09}, {'connected_gene': 'LOXL2', 'score': 10.57}, {'connected_gene': 'NKX3-1', 'score': 10.38}, {'connected_gene': 'BIN3', 'score': 10.18}, {'connected_gene': 'CHMP7', 'score': 10.15}]
chr8	GH08I023493	23493530	23494074	0.8	[{'connected_gene': 'LOC105379327', 'score': 550.77}, {'connected_gene': 'ENTPD4', 'score': 21.47}, {'connected_gene': 'ENSG00000253200', 'score': 17.49}, {'connected_gene': 'SLC25A37', 'score': 17.17}, {'connected_gene': 'C8orf58', 'score': 15.76}, {'connected_gene': 'CCAR2', 'score': 12.62}, {'connected_gene': 'ENSG00000253390', 'score': 11.09}, {'connected_gene': 'NKX3-1', 'score': 10.38}, {'connected_gene': 'BIN3', 'score': 10.18}, {'connected_gene': 'CHMP7', 'score': 10.15}, {'connected_gene': 'LOC646708', 'score': 0.39}]
chr8	GH08I023494	23494549	23494795	0.8	[{'connected_gene': 'LOC105379327', 'score': 550.77}, {'connected_gene': 'ENTPD4', 'score': 25.39}, {'connected_gene': 'ENSG00000253200', 'score': 18.99}, {'connected_gene': 'LOC107986927', 'score': 13.22}, {'connected_gene': 'SLC25A37', 'score': 11.66}, {'connected_gene': 'ENSG00000253390', 'score': 11.09}, {'connected_gene': 'C8orf58', 'score': 10.72}, {'connected_gene': 'LOXL2', 'score': 10.57}, {'connected_gene': 'NKX3-1', 'score': 10.54}]
chr8	GH08I023503	23493400	23493524	0.2	[{'connected_gene': 'LOC105379327', 'score': 550.77}, {'connected_gene': 'SLC25A37', 'score': 11.64}, {'connected_gene': 'ENSG00000253390', 'score': 11.11}, {'connected_gene': 'ENTPD4', 'score': 11.09}, {'connected_gene': 'NKX3-1', 'score': 10.38}, {'connected_gene': 'LOC646708', 'score': 0.44}]
chr8	GH08I023483	23483786	23484504	1.19	[{'connected_gene': 'PIR31348', 'score': 550.77}, {'connected_gene': 'LOC646708', 'score': 550.77}, {'connected_gene': 'GC08P023517', 'score': 550.77}, {'connected_gene': 'PIR32720', 'score': 550.77}, {'connected_gene': 'PIR35400', 'score': 550.77}, {'connected_gene': 'PIR58622', 'score': 550.77}, {'connected_gene': 'SLC25A37', 'score': 13.6}, {'connected_gene': 'ENTPD4', 'score': 11.87}, {'connected_gene': 'ENSG00000253390', 'score': 11.87}, {'connected_gene': 'NKX3-1', 'score': 11.53}, {'connected_gene': 'LOC105379327', 'score': 0.39}]
chr8	GH08I022972	22972802	22976082	1.53	[{'connected_gene': 'GC08M022975', 'score': 550.77}, {'connected_gene': 'RHOBTB2', 'score': 5.61}, {'connected_gene': 'TNFRSF10B', 'score': 4.97}, {'connected_gene': 'NKX3-1', 'score': 4.79}, {'connected_gene': 'LOC107986927', 'score': 4.69}, {'connected_gene': 'CHMP7', 'score': 1.54}, {'connected_gene': 'GC08M022970', 'score': 0.77}, {'connected_gene': 'PEBP4', 'score': 0.31}]