PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000515820	[[85413139, 85414702], [85416824, 85416997], [85417645, 85418103]]	[[85414441, 85414702], [85416824, 85416845]]
ENST00000295886	[[85413139, 85414702], [85416824, 85416997], [85418711, 85419603]]	[[85414441, 85414702], [85416824, 85416997], [85418711, 85419381]]
NM_006168	[[85414435, 85414702], [85416824, 85416997], [85418711, 85419387]]	[[85414441, 85414702], [85416824, 85416997], [85418711, 85419381]]

Promoter

Chrom	Start	End	Description
chr4	85419242	85419289	CAGE_peak_4_at_NKX6-1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I083640	83640008	83640157	0.74	[{'connected_gene': 'GPAT3', 'score': 12.37}, {'connected_gene': 'ABRAXAS1', 'score': 11.92}, {'connected_gene': 'NKX6-1', 'score': 9.75}, {'connected_gene': 'GC04M083639', 'score': 0.77}, {'connected_gene': 'ENSG00000201633', 'score': 0.77}, {'connected_gene': 'GC04M083654', 'score': 0.34}]
chr4	GH04I084499	84499428	84499597	0.92	[{'connected_gene': 'NKX6-1', 'score': 550.77}, {'connected_gene': 'RPL3P13', 'score': 0.25}]
chr4	GH04I084500	84499728	84499877	0.76	[{'connected_gene': 'NKX6-1', 'score': 550.77}, {'connected_gene': 'RPL3P13', 'score': 0.26}]
chr4	GH04I084479	84479609	84480462	0.46	[{'connected_gene': 'NKX6-1', 'score': 4.77}, {'connected_gene': 'GC04P084474', 'score': 0.44}, {'connected_gene': 'GC04P084495', 'score': 0.37}]
chr4	GH04I084480	84480853	84482173	0.38	[{'connected_gene': 'NKX6-1', 'score': 5.25}, {'connected_gene': 'GC04P084474', 'score': 0.44}, {'connected_gene': 'GC04P084495', 'score': 0.39}]
chr4	GH04I084498	84498335	84499217	1.45	[{'connected_gene': 'NKX6-1', 'score': 557.23}, {'connected_gene': 'GC04P084495', 'score': 0.77}]
chr4	GH04I084531	84531082	84532177	0.66	[{'connected_gene': 'CDS1', 'score': 16.59}, {'connected_gene': 'NKX6-1', 'score': 11.02}, {'connected_gene': 'WDFY3-AS2', 'score': 5.23}, {'connected_gene': 'RPL3P13', 'score': 0.39}, {'connected_gene': 'LOC102723338', 'score': 0.23}]
chr4	GH04I084581	84581320	84586898	2.15	[{'connected_gene': 'LOC102723338', 'score': 550.77}, {'connected_gene': 'CDS1', 'score': 550.77}, {'connected_gene': 'NKX6-1', 'score': 9.33}, {'connected_gene': 'WDFY3-AS2', 'score': 5.63}, {'connected_gene': 'PIR31866', 'score': 0.19}]
chr4	GH04I084492	84492004	84494313	0.56	[{'connected_gene': 'GC04P084495', 'score': 550.77}, {'connected_gene': 'ABRAXAS1', 'score': 10.26}, {'connected_gene': 'NKX6-1', 'score': 7.8}, {'connected_gene': 'GC04P084474', 'score': 0.37}]