PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000535299	[[5541277, 5541508], [5615730, 5615883], [5618741, 5618998], [5621282, 5621374], [5630560, 5630702]]	None
ENST00000423158	[[5541278, 5541508], [5603359, 5604465]]	[[5541490, 5541508], [5603359, 5604154]]
ENST00000543548	[[5542290, 5542498], [5603359, 5603667]]	None
ENST00000331010	[[5603297, 5604464]]	[[5603380, 5604154]]
ENST00000544836	[[5620774, 5620890], [5621282, 5621374], [5621970, 5622242]]	None
ENST00000541234	[[5620822, 5620890], [5621282, 5621374], [5622279, 5622559]]	None
NM_001102654	[[5541279, 5541508], [5603359, 5604465]]	[[5541490, 5541508], [5603359, 5604154]]
NM_002527	[[5603297, 5604465]]	[[5603380, 5604154]]

Promoter

Chrom	Start	End	Description
chr12	5541253	5541258	CAGE_peak_2_at_NTF3_5end
chr12	5541267	5541285	CAGE_peak_1_at_NTF3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I005461	5461170	5462059	0.43	[{'connected_gene': 'NTF3', 'score': 12.14}, {'connected_gene': 'C12orf4', 'score': 10.97}, {'connected_gene': 'GC12P005645', 'score': 0.44}, {'connected_gene': 'GC12M005446', 'score': 0.39}, {'connected_gene': 'GC12M005461', 'score': 0.39}]
chr12	GH12I005806	5806015	5810141	0.73	[{'connected_gene': 'NTF3', 'score': 9.63}, {'connected_gene': 'GC12P005823', 'score': 0.37}, {'connected_gene': 'GC12P005770', 'score': 0.28}, {'connected_gene': 'ANO2', 'score': 0.11}]
chr12	GH12I005632	5632482	5633796	0.2	[{'connected_gene': 'NTF3', 'score': 10.52}, {'connected_gene': 'GC12M005631', 'score': 0.44}, {'connected_gene': 'GC12M005594', 'score': 0.39}, {'connected_gene': 'GC12P005590', 'score': 0.26}, {'connected_gene': 'ANO2', 'score': 0.06}]
chr12	GH12I005429	5429195	5435179	2.22	[{'connected_gene': 'NTF3', 'score': 566.58}, {'connected_gene': 'LOC105369620', 'score': 550.77}, {'connected_gene': 'KCNA5', 'score': 6.34}, {'connected_gene': 'GC12M005446', 'score': 0.37}]
chr12	GH12I005185	5185039	5186400	0.2	[{'connected_gene': 'NTF3', 'score': 10.25}, {'connected_gene': 'LOC105369618', 'score': 5.94}, {'connected_gene': 'LOC105369616', 'score': 0.37}, {'connected_gene': 'GC12P005653', 'score': 0.23}, {'connected_gene': 'GC12P005649', 'score': 0.23}, {'connected_gene': 'LOC105369617', 'score': 0.21}]
chr12	GH12I005561	5561975	5562124	0.31	[{'connected_gene': 'NTF3', 'score': 10.06}, {'connected_gene': 'LOC101901829', 'score': 0.34}, {'connected_gene': 'PIR39734', 'score': 0.28}, {'connected_gene': 'ANO2', 'score': 0.05}]
chr12	GH12I005494	5494037	5494096	0.5	[{'connected_gene': 'NTF3', 'score': 550.21}, {'connected_gene': 'GC12M005501', 'score': 0.44}, {'connected_gene': 'GC12M005461', 'score': 0.37}]
chr12	GH12I005496	5496749	5501350	0.79	[{'connected_gene': 'NTF3', 'score': 11.23}, {'connected_gene': 'GC12M005501', 'score': 0.77}, {'connected_gene': 'GC12M005461', 'score': 0.34}]
chr12	GH12I005455	5455609	5458429	1.13	[{'connected_gene': 'NTF3', 'score': 13.53}, {'connected_gene': 'GC12M005446', 'score': 0.44}, {'connected_gene': 'GC12P005645', 'score': 0.39}]
chr12	GH12I005438	5438403	5439212	0.31	[{'connected_gene': 'NTF3', 'score': 0.44}, {'connected_gene': 'GC12M005446', 'score': 0.39}]
chr12	GH12I005437	5437054	5438106	0.63	[{'connected_gene': 'NTF3', 'score': 0.44}, {'connected_gene': 'GC12M005446', 'score': 0.39}]
chr12	GH12I005441	5441075	5441224	0.43	[{'connected_gene': 'KCNA5', 'score': 9.93}, {'connected_gene': 'GC12M005446', 'score': 0.44}, {'connected_gene': 'NTF3', 'score': 0.44}]
chr12	GH12I005442	5441595	5441744	0.43	[{'connected_gene': 'KCNA5', 'score': 9.93}, {'connected_gene': 'GC12M005446', 'score': 0.44}, {'connected_gene': 'NTF3', 'score': 0.44}]
chr12	GH12I004537	4537489	4540504	2.06	[{'connected_gene': 'RAD51AP1', 'score': 550.77}, {'connected_gene': 'C12orf4', 'score': 550.77}, {'connected_gene': 'NTF3', 'score': 11.27}, {'connected_gene': 'GC12M004550', 'score': 0.39}]
chr12	GH12I005166	5166595	5167701	0.69	[{'connected_gene': 'LOC105369618', 'score': 11.66}, {'connected_gene': 'NTF3', 'score': 10.46}, {'connected_gene': 'LOC105369616', 'score': 0.29}, {'connected_gene': 'GC12P005653', 'score': 0.29}, {'connected_gene': 'GC12P005649', 'score': 0.29}, {'connected_gene': 'LOC105369617', 'score': 0.26}]
chr12	GH12I006166	6166153	6170026	1.71	[{'connected_gene': 'PIR38862', 'score': 550.77}, {'connected_gene': 'CD9', 'score': 19.83}, {'connected_gene': 'VWF', 'score': 11.77}, {'connected_gene': 'ATN1', 'score': 11.08}, {'connected_gene': 'NTF3', 'score': 10.88}, {'connected_gene': 'TNFRSF1A', 'score': 2.37}, {'connected_gene': 'TAPBPL', 'score': 1.45}, {'connected_gene': 'VAMP1', 'score': 1.34}, {'connected_gene': 'PIR39839', 'score': 0.44}, {'connected_gene': 'LOC105369623', 'score': 0.39}]
chr12	GH12I005505	5505485	5506229	0.31	[{'connected_gene': 'GC12M005501', 'score': 0.77}, {'connected_gene': 'PIR39734', 'score': 0.37}, {'connected_gene': 'NTF3', 'score': 0.19}]
chr12	GH12I005487	5487309	5490609	0.31	[{'connected_gene': 'ENSG00000256654', 'score': 5.35}, {'connected_gene': 'GC12M005501', 'score': 0.39}, {'connected_gene': 'GC12M005461', 'score': 0.39}, {'connected_gene': 'NTF3', 'score': 0.22}]
chr12	GH12I005465	5465473	5466684	0.31	[{'connected_gene': 'GC12P005645', 'score': 0.77}, {'connected_gene': 'GC12M005461', 'score': 0.39}, {'connected_gene': 'GC12M005446', 'score': 0.37}, {'connected_gene': 'NTF3', 'score': 0.29}]
chr12	GH12I005479	5479723	5481487	0.78	[{'connected_gene': 'GC12M005461', 'score': 0.77}, {'connected_gene': 'GC12M005501', 'score': 0.34}, {'connected_gene': 'NTF3', 'score': 0.25}]
chr12	GH12I005503	5503335	5504556	0.63	[{'connected_gene': 'GC12M005501', 'score': 0.77}, {'connected_gene': 'PIR39734', 'score': 0.37}, {'connected_gene': 'NTF3', 'score': 0.19}]
chr12	GH12I005511	5511405	5512959	0.72	[{'connected_gene': 'GC12M005501', 'score': 0.39}, {'connected_gene': 'PIR39734', 'score': 0.39}, {'connected_gene': 'NTF3', 'score': 0.18}]
chr12	GH12I005448	5448983	5449885	0.2	[{'connected_gene': 'GC12M005446', 'score': 550.77}, {'connected_gene': 'KCNA5', 'score': 10.21}, {'connected_gene': 'NTF3', 'score': 0.37}]