PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000370501	[[61340188, 61341273], [61386036, 61386238], [61389617, 61389708], [61391369, 61394123]]	[[61340559, 61341273], [61386036, 61386238], [61389617, 61389708], [61391369, 61391619]]
ENST00000482259	[[61387982, 61388087], [61389617, 61389708], [61391369, 61394123]]	None
NM_002531	[[61340188, 61341273], [61386036, 61386238], [61389617, 61389708], [61391369, 61394123]]	[[61340559, 61341273], [61386036, 61386238], [61389617, 61389708], [61391369, 61391619]]

Promoter

Chrom	Start	End	Description
chr20	61340152	61340173	CAGE_peak_2_at_NTSR1_5end
chr20	61340179	61340195	CAGE_peak_1_at_NTSR1_5end
chr20	61340492	61340503	CAGE_peak_6_at_NTSR1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr20	GH20I062708	62708787	62713063	1.75	[{'connected_gene': 'NTSR1', 'score': 550.77}, {'connected_gene': 'RTEL1', 'score': 19.89}, {'connected_gene': 'ARFGAP1', 'score': 15.56}, {'connected_gene': 'TNFRSF6B', 'score': 13.58}, {'connected_gene': 'YTHDF1', 'score': 12.4}, {'connected_gene': 'ARFRP1', 'score': 12.24}, {'connected_gene': 'ENSG00000223669', 'score': 11.99}, {'connected_gene': 'OGFR-AS1', 'score': 11.51}, {'connected_gene': 'OGFR', 'score': 11.51}, {'connected_gene': 'SLCO4A1-AS1', 'score': 11.5}, {'connected_gene': 'SLCO4A1', 'score': 11.44}, {'connected_gene': 'MRGBP', 'score': 10.96}, {'connected_gene': 'ENSG00000229882', 'score': 10.49}, {'connected_gene': 'ENSG00000232121', 'score': 10.49}, {'connected_gene': 'MIR133A2', 'score': 10.15}, {'connected_gene': 'PTK6', 'score': 5.98}]
chr20	GH20I062685	62685801	62686800	1.35	[{'connected_gene': 'NTSR1', 'score': 20.01}, {'connected_gene': 'SLCO4A1', 'score': 1.74}, {'connected_gene': 'OGFR', 'score': 1.64}, {'connected_gene': 'DPH3P1', 'score': 1.58}, {'connected_gene': 'LINC00686', 'score': 0.39}, {'connected_gene': 'SLCO4A1-AS1', 'score': 0.37}]
chr20	GH20I062785	62785820	62786793	0.51	[{'connected_gene': 'NTSR1', 'score': 11.33}, {'connected_gene': 'LINC00686', 'score': 11.32}, {'connected_gene': 'MRGBP', 'score': 6.08}, {'connected_gene': 'LINC00659', 'score': 0.44}, {'connected_gene': 'LOC105372716', 'score': 0.44}]
chr20	GH20I062760	62760557	62761143	0.2	[{'connected_gene': 'NTSR1', 'score': 16.63}, {'connected_gene': 'LINC00686', 'score': 11.89}, {'connected_gene': 'ENSG00000223669', 'score': 11.45}, {'connected_gene': 'GC20M062750', 'score': 0.44}, {'connected_gene': 'GC20P062821', 'score': 0.39}]
chr20	GH20I062702	62702726	62706569	1.36	[{'connected_gene': 'NTSR1', 'score': 0.77}, {'connected_gene': 'LINC00686', 'score': 0.77}]
chr20	GH20I062674	62674989	62676144	0.75	[{'connected_gene': 'NTSR1', 'score': 8.62}, {'connected_gene': 'OGFR', 'score': 3.78}, {'connected_gene': 'SLCO4A1-AS1', 'score': 0.44}, {'connected_gene': 'LINC00686', 'score': 0.34}, {'connected_gene': 'SLCO4A1', 'score': 0.29}]
chr20	GH20I062751	62751608	62751718	0.38	[{'connected_gene': 'NTSR1', 'score': 12.26}, {'connected_gene': 'LINC00659', 'score': 12.14}, {'connected_gene': 'SLCO4A1-AS1', 'score': 11.77}, {'connected_gene': 'SLCO4A1', 'score': 11.73}, {'connected_gene': 'MIR133A2', 'score': 10.42}, {'connected_gene': 'GC20M062750', 'score': 0.77}, {'connected_gene': 'ENSG00000223669', 'score': 0.37}]
chr20	GH20I062677	62677479	62679200	0.49	[{'connected_gene': 'NTSR1', 'score': 12.82}, {'connected_gene': 'SLCO4A1-AS1', 'score': 0.39}, {'connected_gene': 'LINC00686', 'score': 0.34}, {'connected_gene': 'SLCO4A1', 'score': 0.28}]
chr20	GH20I062352	62352563	62371667	2.81	[{'connected_gene': 'LAMA5', 'score': 580.43}, {'connected_gene': 'LAMA5-AS1', 'score': 24.46}, {'connected_gene': 'ARFGAP1', 'score': 15.55}, {'connected_gene': 'YTHDF1', 'score': 12.39}, {'connected_gene': 'MTG2', 'score': 8.95}, {'connected_gene': 'CABLES2', 'score': 8.74}, {'connected_gene': 'OSBPL2', 'score': 8.56}, {'connected_gene': 'BHLHE23', 'score': 5.94}, {'connected_gene': 'MRGBP', 'score': 3.35}, {'connected_gene': 'ADRM1', 'score': 3.31}, {'connected_gene': 'RPS21', 'score': 2.12}, {'connected_gene': 'RBBP8NL', 'score': 1.96}, {'connected_gene': 'PSMA7', 'score': 1.85}, {'connected_gene': 'SLCO4A1', 'score': 1.82}, {'connected_gene': 'NTSR1', 'score': 1.47}, {'connected_gene': 'SS18L1', 'score': 1.19}, {'connected_gene': 'TAF4', 'score': 1.12}]
chr20	GH20I062738	62738241	62743126	1.63	[{'connected_gene': 'OGFR', 'score': 18.09}, {'connected_gene': 'NTSR1', 'score': 17.24}, {'connected_gene': 'LINC00659', 'score': 12.1}, {'connected_gene': 'LINC00686', 'score': 12.06}, {'connected_gene': 'OGFR-AS1', 'score': 11.6}, {'connected_gene': 'MIR1-1', 'score': 10.54}, {'connected_gene': 'MIR1-1HG-AS1', 'score': 10.54}, {'connected_gene': 'MIR1-1HG', 'score': 10.54}, {'connected_gene': 'ENSG00000229882', 'score': 10.41}, {'connected_gene': 'ENSG00000232121', 'score': 10.41}, {'connected_gene': 'ENSG00000223669', 'score': 6.1}, {'connected_gene': 'DPH3P1', 'score': 3.16}, {'connected_gene': 'DIDO1', 'score': 2.61}, {'connected_gene': 'GC20M062750', 'score': 0.39}]
chr20	GH20I062715	62715919	62716899	0.66	[{'connected_gene': 'OGFR', 'score': 11.52}, {'connected_gene': 'OGFR-AS1', 'score': 11.52}, {'connected_gene': 'LINC00659', 'score': 11.52}, {'connected_gene': 'SLCO4A1-AS1', 'score': 11.48}, {'connected_gene': 'SLCO4A1', 'score': 11.43}, {'connected_gene': 'MIR133A2', 'score': 11.07}, {'connected_gene': 'MRGBP', 'score': 10.97}, {'connected_gene': 'ENSG00000229882', 'score': 10.48}, {'connected_gene': 'ENSG00000232121', 'score': 10.48}, {'connected_gene': 'NTSR1', 'score': 0.44}, {'connected_gene': 'ENSG00000223669', 'score': 0.37}]
chr20	GH20I062727	62727201	62729200	0.89	[{'connected_gene': 'LINC00659', 'score': 11.55}, {'connected_gene': 'SLCO4A1', 'score': 11.2}, {'connected_gene': 'ENSG00000229882', 'score': 10.69}, {'connected_gene': 'ENSG00000232121', 'score': 10.69}, {'connected_gene': 'OGFR-AS1', 'score': 10.46}, {'connected_gene': 'OGFR', 'score': 10.46}, {'connected_gene': 'ENSG00000223669', 'score': 0.44}, {'connected_gene': 'NTSR1', 'score': 0.37}]
chr20	GH20I062732	62732170	62732278	0.4	[{'connected_gene': 'LINC00659', 'score': 11.57}, {'connected_gene': 'SLCO4A1-AS1', 'score': 11.23}, {'connected_gene': 'SLCO4A1', 'score': 11.2}, {'connected_gene': 'ENSG00000229882', 'score': 10.68}, {'connected_gene': 'ENSG00000232121', 'score': 10.68}, {'connected_gene': 'OGFR-AS1', 'score': 10.56}, {'connected_gene': 'OGFR', 'score': 10.56}, {'connected_gene': 'ENSG00000223669', 'score': 0.77}, {'connected_gene': 'NTSR1', 'score': 0.34}]
chr20	GH20I062668	62668589	62668778	1.08	[{'connected_gene': 'SLCO4A1-AS1', 'score': 550.77}, {'connected_gene': 'LINC00686', 'score': 12.37}, {'connected_gene': 'NTSR1', 'score': 12.33}, {'connected_gene': 'ENSG00000223669', 'score': 11.11}, {'connected_gene': 'GC20P062822', 'score': 0.37}, {'connected_gene': 'SLCO4A1', 'score': 0.31}]
chr20	GH20I062666	62666139	62668416	1.14	[{'connected_gene': 'SLCO4A1-AS1', 'score': 550.77}, {'connected_gene': 'LINC00686', 'score': 12.37}, {'connected_gene': 'NTSR1', 'score': 12.33}, {'connected_gene': 'ENSG00000223669', 'score': 11.11}, {'connected_gene': 'GC20P062822', 'score': 0.37}, {'connected_gene': 'SLCO4A1', 'score': 0.34}]
chr20	GH20I062752	62752201	62752800	0.6	[{'connected_gene': 'GC20M062750', 'score': 550.77}, {'connected_gene': 'NTSR1', 'score': 12.26}, {'connected_gene': 'LINC00659', 'score': 12.17}, {'connected_gene': 'SLCO4A1-AS1', 'score': 11.76}, {'connected_gene': 'SLCO4A1', 'score': 11.73}, {'connected_gene': 'MIR133A2', 'score': 10.42}, {'connected_gene': 'TCFL5', 'score': 4.71}, {'connected_gene': 'ENSG00000223669', 'score': 0.37}]
chr20	GH20I062734	62734320	62735946	0.96	[{'connected_gene': 'ENSG00000223669', 'score': 550.77}, {'connected_gene': 'NTSR1', 'score': 0.31}]
chr20	GH20I062733	62732469	62732618	0.4	[{'connected_gene': 'ENSG00000223669', 'score': 0.77}, {'connected_gene': 'NTSR1', 'score': 0.34}]