PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000321792	[[89445138, 89449749], [89458267, 89458455]]	[[89448336, 89449509]]
ENST00000399794	[[89445141, 89449749], [89453934, 89454034], [89458267, 89458643]]	[[89448336, 89449509]]
ENST00000413769	[[89449033, 89449749], [89453934, 89454034], [89458267, 89458442]]	None
NM_001162536	[[89445138, 89449749], [89453934, 89454034], [89458267, 89458643]]	[[89448336, 89449509]]
NM_019610	[[89445138, 89449749], [89458267, 89458643]]	[[89448336, 89449509]]

Promoter

Chrom	Start	End	Description
chr1	89458415	89458463	CAGE_peak_1_at_RBMXL1_5end,CAGE_peak_2_at_CCBL2_5end
chr1	89458651	89458685	CAGE_peak_2_at_RBMXL1_5end,CAGE_peak_6_at_CCBL2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I088990	88990547	88994566	2.49	[{'connected_gene': 'KYAT3', 'score': 550.77}, {'connected_gene': 'RBMXL1', 'score': 550.77}, {'connected_gene': 'GBP3', 'score': 86.11}, {'connected_gene': 'GBP5', 'score': 10.91}, {'connected_gene': 'GBP6', 'score': 10.8}, {'connected_gene': 'GBP7', 'score': 5.12}, {'connected_gene': 'PTGES3P1', 'score': 4.75}, {'connected_gene': 'GC01M088952', 'score': 0.28}]
chr1	GH01I088682	88682334	88686789	2.11	[{'connected_gene': 'PKN2', 'score': 613.9}, {'connected_gene': 'PKN2-AS1', 'score': 550.77}, {'connected_gene': 'KYAT3', 'score': 54.13}, {'connected_gene': 'ELOCP19', 'score': 14.8}, {'connected_gene': 'LOC100130455', 'score': 11.27}, {'connected_gene': 'RBMXL1', 'score': 10.37}, {'connected_gene': 'PTGES3P1', 'score': 9.78}]
chr1	GH01I088700	88700001	88702600	1.22	[{'connected_gene': 'GBP3', 'score': 14.58}, {'connected_gene': 'PKN2', 'score': 10.9}, {'connected_gene': 'RBMXL1', 'score': 10.37}, {'connected_gene': 'GTF2B', 'score': 7.95}, {'connected_gene': 'GBP2', 'score': 6.73}, {'connected_gene': 'GBP4', 'score': 3.37}, {'connected_gene': 'GBP1', 'score': 2.6}, {'connected_gene': 'GC01P088703', 'score': 0.77}, {'connected_gene': 'PKN2-AS1', 'score': 0.37}]
chr1	GH01I089081	89081001	89081400	0.72	[{'connected_gene': 'GBP3', 'score': 22.99}, {'connected_gene': 'GBP5', 'score': 10.99}, {'connected_gene': 'GBP7', 'score': 10.39}, {'connected_gene': 'RBMXL1', 'score': 4.52}, {'connected_gene': 'GBP1', 'score': 0.37}, {'connected_gene': 'GC01M089104', 'score': 0.34}, {'connected_gene': 'LOC105378841', 'score': 0.25}]
chr1	GH01I089051	89051339	89052801	0.66	[{'connected_gene': 'GBP3', 'score': 49.53}, {'connected_gene': 'GBP5', 'score': 10.1}, {'connected_gene': 'GBP7', 'score': 9.51}, {'connected_gene': 'RBMXL1', 'score': 4.64}, {'connected_gene': 'GC01M089045', 'score': 0.44}, {'connected_gene': 'GBP1', 'score': 0.39}, {'connected_gene': 'LOC105378841', 'score': 0.37}]
chr1	GH01I088889	88889569	88893602	2.42	[{'connected_gene': 'GTF2B', 'score': 550.77}, {'connected_gene': 'KYAT3', 'score': 65.83}, {'connected_gene': 'PKN2', 'score': 41.89}, {'connected_gene': 'ELOCP19', 'score': 13.9}, {'connected_gene': 'LOC100130455', 'score': 13.11}, {'connected_gene': 'PTGES3P1', 'score': 9.81}, {'connected_gene': 'RBMXL1', 'score': 4.45}, {'connected_gene': 'GC01M088841', 'score': 0.25}]
chr1	GH01I088983	88983458	88986492	1	[{'connected_gene': 'GBP6', 'score': 10.73}, {'connected_gene': 'RBMXL1', 'score': 10.62}, {'connected_gene': 'GBP5', 'score': 10.42}, {'connected_gene': 'LOC100421401', 'score': 10.22}, {'connected_gene': 'KYAT3', 'score': 0.44}, {'connected_gene': 'GC01M088952', 'score': 0.29}]
chr1	GH01I088989	88989801	88990000	0.38	[{'connected_gene': 'GBP5', 'score': 10.91}, {'connected_gene': 'GBP6', 'score': 10.8}, {'connected_gene': 'KYAT3', 'score': 0.77}, {'connected_gene': 'RBMXL1', 'score': 0.77}, {'connected_gene': 'GC01M088952', 'score': 0.28}]
chr1	GH01I088998	88998818	88998967	0.57	[{'connected_gene': 'GC01P089002', 'score': 0.77}, {'connected_gene': 'KYAT3', 'score': 0.44}, {'connected_gene': 'RBMXL1', 'score': 0.44}]
chr1	GH01I089043	89043758	89046836	1.09	[{'connected_gene': 'GC01M089045', 'score': 550.77}, {'connected_gene': 'GBP3', 'score': 55.37}, {'connected_gene': 'GBP5', 'score': 11.25}, {'connected_gene': 'GBP7', 'score': 10.75}, {'connected_gene': 'RBMXL1', 'score': 4.66}, {'connected_gene': 'LOC105378841', 'score': 0.39}]
chr1	GH01I089001	89001251	89001492	0.26	[{'connected_gene': 'GC01P089002', 'score': 550.77}, {'connected_gene': 'GBP3', 'score': 24.37}, {'connected_gene': 'GBP5', 'score': 10.39}, {'connected_gene': 'GBP7', 'score': 9.74}, {'connected_gene': 'GTF2B', 'score': 1.37}, {'connected_gene': 'GBP2', 'score': 1.26}, {'connected_gene': 'KYAT3', 'score': 0.44}, {'connected_gene': 'RBMXL1', 'score': 0.44}]